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J Biomed Inform ; 87: 79-87, 2018 11.
Artículo en Inglés | MEDLINE | ID: mdl-30296491

RESUMEN

This paper proposes an effective and robust approach for Chemical-Induced Disease (CID) relation extraction from PubMed articles. The study was performed on the Chemical Disease Relation (CDR) task of BioCreative V track-3 corpus. The proposed system, named relSCAN, is an efficient CID relation extraction system with two phases to classify relation instances from the Co-occurrence and Non-Co-occurrence mention levels. We describe the case of chemical and disease mentions that occur in the same sentence as 'Co-occurrence', or as 'Non-Co-occurrence' otherwise. In the first phase, the relation instances are constructed on both mention levels. In the second phase, we employ a hybrid feature set to classify the relation instances at both of these mention levels using the combination of two Machine Learning (ML) classifiers (Support Vector Machine (SVM) and J48 Decision tree). This system is entirely corpus dependent and does not rely on information from external resources in order to boost its performance. We achieved good results, which are comparable with the other state-of-the-art CID relation extraction systems on the BioCreative V corpus. Furthermore, our system achieves the best performance on the Non-Co-occurrence mention level.


Asunto(s)
Trastornos Químicamente Inducidos/diagnóstico , Minería de Datos/métodos , Informática Médica/métodos , Máquina de Vectores de Soporte , Algoritmos , Toma de Decisiones , Enfermedad , Humanos , Aprendizaje Automático , Publicaciones , Distribución Aleatoria , Análisis de Regresión
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