Differentially Private Bayesian Neural Networks on Accuracy, Privacy and Reliability.

Bayesian neural network (BNN) allows for uncertainty quantification in prediction, offering an advantage over regular neural networks that has not been explored in the differential privacy (DP) framework. We fill this important gap by leveraging recent development in Bayesian deep learning and privacy accounting to offer a more precise analysis of the trade-off between privacy and accuracy in BNN. We propose three DP-BNNs that characterize the weight uncertainty for the same network architecture in distinct ways, namely DP-SGLD (via the noisy gradient method), DP-BBP (via changing the parameters of interest) and DP-MC Dropout (via the model architecture). Interestingly, we show a new equivalence between DP-SGD and DP-SGLD, implying that some non-Bayesian DP training naturally allows for uncertainty quantification. However, the hyperparameters such as learning rate and batch size, can have different or even opposite effects in DP-SGD and DP-SGLD. Extensive experiments are conducted to compare DP-BNNs, in terms of privacy guarantee, prediction accuracy, uncertainty quantification, calibration, computation speed, and generalizability to network architecture. As a result, we observe a new tradeoff between the privacy and the reliability. When compared to non-DP and non-Bayesian approaches, DP-SGLD is remarkably accurate under strong privacy guarantee, demonstrating the great potential of DP-BNN in real-world tasks.

CEDAR: communication efficient distributed analysis for regressions.

Electronic health records (EHRs) offer great promises for advancing precision medicine and, at the same time, present significant analytical challenges. Particularly, it is often the case that patient-level data in EHRs cannot be shared across institutions (data sources) due to government regulations and/or institutional policies. As a result, there are growing interests about distributed learning over multiple EHRs databases without sharing patient-level data. To tackle such challenges, we propose a novel communication efficient method that aggregates the optimal estimates of external sites, by turning the problem into a missing data problem. In addition, we propose incorporating posterior samples of remote sites, which can provide partial information on the missing quantities and improve efficiency of parameter estimates while having the differential privacy property and thus reducing the risk of information leaking. The proposed approach, without sharing the raw patient level data, allows for proper statistical inference. We provide theoretical investigation for the asymptotic properties of the proposed method for statistical inference as well as differential privacy, and evaluate its performance in simulations and real data analyses in comparison with several recently developed methods.

MISNN: Multiple Imputation via Semi-parametric Neural Networks.

Multiple imputation (MI) has been widely applied to missing value problems in biomedical, social and econometric research, in order to avoid improper inference in the downstream data analysis. In the presence of high-dimensional data, imputation models that include feature selection, especially ℓ1 regularized regression (such as Lasso, adaptive Lasso, and Elastic Net), are common choices to prevent the model from underdetermination. However, conducting MI with feature selection is difficult: existing methods are often computationally inefficient and poor in performance. We propose MISNN, a novel and efficient algorithm that incorporates feature selection for MI. Leveraging the approximation power of neural networks, MISNN is a general and flexible framework, compatible with any feature selection method, any neural network architecture, high/low-dimensional data and general missing patterns. Through empirical experiments, MISNN has demonstrated great advantages over state-of-the-art imputation methods (e.g. Bayesian Lasso and matrix completion), in terms of imputation accuracy, statistical consistency and computation speed.

On the Convergence and Calibration of Deep Learning with Differential Privacy.

Differentially private (DP) training preserves the data privacy usually at the cost of slower convergence (and thus lower accuracy), as well as more severe mis-calibration than its non-private counterpart. To analyze the convergence of DP training, we formulate a continuous time analysis through the lens of neural tangent kernel (NTK), which characterizes the per-sample gradient clipping and the noise addition in DP training, for arbitrary network architectures and loss functions. Interestingly, we show that the noise addition only affects the privacy risk but not the convergence or calibration, whereas the per-sample gradient clipping (under both flat and layerwise clipping styles) only affects the convergence and calibration. Furthermore, we observe that while DP models trained with small clipping norm usually achieve the best accurate, but are poorly calibrated and thus unreliable. In sharp contrast, DP models trained with large clipping norm enjoy the same privacy guarantee and similar accuracy, but are significantly more calibrated. Our code can be found at https://github.com/woodyx218/opacus_global_clipping.

Multiple Imputation with Neural Network Gaussian Process for High-dimensional Incomplete Data.

Missing data are ubiquitous in real world applications and, if not adequately handled, may lead to the loss of information and biased findings in downstream analysis. Particularly, high-dimensional incomplete data with a moderate sample size, such as analysis of multi-omics data, present daunting challenges. Imputation is arguably the most popular method for handling missing data, though existing imputation methods have a number of limitations. Single imputation methods such as matrix completion methods do not adequately account for imputation uncertainty and hence would yield improper statistical inference. In contrast, multiple imputation (MI) methods allow for proper inference but existing methods do not perform well in high-dimensional settings. Our work aims to address these significant methodological gaps, leveraging recent advances in neural network Gaussian process (NNGP) from a Bayesian viewpoint. We propose two NNGP-based MI methods, namely MI-NNGP, that can apply multiple imputations for missing values from a joint (posterior predictive) distribution. The MI-NNGP methods are shown to significantly outperform existing state-of-the-art methods on synthetic and real datasets, in terms of imputation error, statistical inference, robustness to missing rates, and computation costs, under three missing data mechanisms, MCAR, MAR, and MNAR. Code is available in the GitHub repository https://github.com/bestadcarry/MI-NNGP.

Multiple Imputation via Generative Adversarial Network for High-dimensional Blockwise Missing Value Problems.

Missing data are present in most real world problems and need careful handling to preserve the prediction accuracy and statistical consistency in the downstream analysis. As the gold standard of handling missing data, multiple imputation (MI) methods are proposed to account for the imputation uncertainty and provide proper statistical inference. In this work, we propose Multiple Imputation via Generative Adversarial Network (MI-GAN), a deep learning-based (in specific, a GAN-based) multiple imputation method, that can work under missing at random (MAR) mechanism with theoretical support. MI-GAN leverages recent progress in conditional generative adversarial neural works and shows strong performance matching existing state-of-the-art imputation methods on high-dimensional datasets, in terms of imputation error. In particular, MI-GAN significantly outperforms other imputation methods in the sense of statistical inference and computational speed.

Deep Learning with Gaussian Differential Privacy.

Deep learning models are often trained on datasets that contain sensitive information such as individuals' shopping transactions, personal contacts, and medical records. An increasingly important line of work therefore has sought to train neural networks subject to privacy constraints that are specified by differential privacy or its divergence-based relaxations. These privacy definitions, however, have weaknesses in handling certain important primitives (composition and subsampling), thereby giving loose or complicated privacy analyses of training neural networks. In this paper, we consider a recently proposed privacy definition termed f-differential privacy [18] for a refined privacy analysis of training neural networks. Leveraging the appealing properties of f-differential privacy in handling composition and subsampling, this paper derives analytically tractable expressions for the privacy guarantees of both stochastic gradient descent and Adam used in training deep neural networks, without the need of developing sophisticated techniques as [3] did. Our results demonstrate that the f-differential privacy framework allows for a new privacy analysis that improves on the prior analysis [3], which in turn suggests tuning certain parameters of neural networks for a better prediction accuracy without violating the privacy budget. These theoretically derived improvements are confirmed by our experiments in a range of tasks in image classification, text classification, and recommender systems. Python code to calculate the privacy cost for these experiments is publicly available in the TensorFlow Privacy library.