Previsual and Early Detection of Myrtle Rust on Rose Apple Using Indices Derived from Thermal Imagery and Visible-to-Short-Infrared Spectroscopy.

Myrtle rust, caused by the fungus Austropuccinia psidii, is a serious disease, which affects many Myrtaceae species. Commercial nurseries that propagate Myrtaceae species are prone to myrtle rust and require a reliable method that allows previsual and early detection of the disease. This study uses time-series thermal imagery and visible-to-short-infrared spectroscopy measurements acquired over 10 days from 81 rose apple plants (Syzygium jambos) that were either inoculated with myrtle rust or maintained disease-free. Using these data, the objectives were to (i) quantify the accuracy of models using thermal indices and narrowband hyperspectral indices (NBHI) for previsual and early detection of myrtle rust using data from older resistant green leaves and young susceptible red leaves and (ii) identify the most important NBHI and thermal indices for disease detection. Using predictions made on a validation dataset, models using indices derived from thermal imagery were able to perfectly (F1 score = 1.0; accuracy = 100%) distinguish control from infected plants previsually one day before symptoms appeared (1 DBS) and for all stages after early symptoms appeared. Compared with control plants, plants with myrtle rust had lower and more variable normalized canopy temperature, which was associated with higher stomatal conductance and transpiration. Using NBHI derived from green leaves, excellent previsual classification was achieved 3 DBS, 2 DBS, and 1 DBS (F1 score range = 0.89 to 0.94). The accurate characterization of myrtle rust during previsual and early stages of disease development suggests that a robust detection methodology could be developed within a nursery setting. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.

Adaptive neuro-fuzzy inference system (ANFIS) and multiple linear regression (MLR) modelling of Cu, Cd, and Pb adsorption onto tropical soils.

Soils interact in many ways with metal ions thereby modifying their mobility, phase distribution, plant availability, speciation, and so on. The most prominent of such interactions is sorption. In this study, we investigated the sorption of Pb, Cd, and Cu in five natural soils of Nigerian origin. A relatively sparsely used method of modelling soil-metal ion adsorption, i.e. adaptive neuro-fuzzy inference system (ANFIS), was applied comparatively with multiple linear regression (MLR) models. The isotherms were well described by Freundlich and Langmuir equations (R2 ≥ 0.95) and the kinetics by nonlinear two-stage kinetic model, TSKM (R2 ≥ 0.81). Based on the values delivered by the Langmuir equation, the maximum adsorption capacities (Qm*) were found to be in the ranges 10,000-20,000, 12,500-50,000, and 4929-35,037 µmol kg-1 for Cd, Cu, and Pb, respectively. The study revealed significant correlations between Qm* and routinely determined soil parameters such as soil organic carbon (Corg), cation exchange capacity (CEC), amorphous Fe and Mn oxides, and percentage clay content. These soil parameters, combined with operational variables (i.e. solution/soil pH, initial metal concentration (Co), and temperature), were used as input vectors in ANFIS and MLR models to predict the adsorption capacities (Qe) of the soil-metal ion systems. A total of 255 different ANFIS and 255 different MLR architectures/models were developed and compared based on three performance metrics: MAE (mean absolute error), RMSE (root mean square errors), and R2 (coefficient of determination). The best ANFIS returned MAEtest 0.134, RMSEtest 0.164, and R2test 0.76, while the best MLR returned MAEtest 0.158, RMSEtest 0.199, and R2test 0.66, indicating the predictive advantage of ANFIS over MLR. Thus, ANFIS can fairly accurately predict the adsorption capacity and/or distribution coefficient of a soil-metal ion system a priori. Nevertheless, more investigation is required to further confirm the robustness/generalisation of the proposed ANFIS.

Quantitative mapping and spectroscopic characterization of particulate organic matter fractions in soil profiles with imaging VisNIR spectroscopy.

Organic matter is an important constituent of soils that controls many soil functions and is of vital importance for ecosystem services like climate regulation and food security. Soil organic matter (SOM consists of a wide spectrum of different organic substances that are highly heterogeneous in terms of chemical composition, stability against microbial decomposition and turnover time. SOM is heterogeneously distributed in the soil profile impeding its fast assessment. A technique to accurately measure SOM quality and quantity with a high spatial resolution in the soil profile is presently lacking. Imaging visible light and near infrared spectroscopy (imVisIR) is a promising technique for the fast and spatially resolved assessment of SOM quality and quantity. In this study, we evaluate the potential of imVisIR to quantitatively map the labile particulate organic matter fraction in undisturbed cores from mineral soils.

Preprocessing Ground-Based Visible/Near Infrared Imaging Spectroscopy Data Affected by Smile Effects.

A data set of very high-resolution visible/near infrared hyperspectral images of young Pinus contorta trees was recorded to study the effects of herbicides on this invasive species. The camera was fixed on a frame while the potted trees were moved underneath on a conveyor belt. To account for changing illumination conditions, a white reference bar was included at the edge of each image line. Conventional preprocessing of the images, i.e., dividing measured values by values from the white reference bar in the same image line, failed and resulted in bad quality spectra with oscillation patterns that are most likely due to wavelength shifts across the sensor's field of view (smile effect). An additional hyperspectral data set of a Spectralon white reference panel could be used to characterize and correct the oscillations introduced by the division, resulting in a high quality spectra that document the effects of herbicides on the reflectance characteristics of coniferous trees. While the spectra of untreated trees remained constant over time, there were clear temporal changes in the spectra of trees treated with both herbicides. One herbicide worked within days, the other one within weeks. Ground-based imaging spectroscopy with meaningful preprocessing proved to be an appropriate tool for monitoring the effects of herbicides on potted plants.

Variability and Uncertainty Challenges in Scaling Imaging Spectroscopy Retrievals and Validations from Leaves Up to Vegetation Canopies.

Imaging spectroscopy of vegetation requires methods for scaling and generalizing optical signals that are reflected, transmitted and emitted in the solar wavelength domain from single leaves and observed at the level of canopies by proximal sensing, airborne and satellite spectroradiometers. The upscaling embedded in imaging spectroscopy retrievals and validations of plant biochemical and structural traits is challenged by natural variability and measurement uncertainties. Sources of the leaf-to-canopy upscaling variability and uncertainties are reviewed with respect to: (1) implementation of retrieval algorithms and (2) their parameterization and validation of quantitative products through in situ field measurements. The challenges are outlined and discussed for empirical and physical leaf and canopy radiative transfer modelling components, considering both forward and inverse modes. Discussion on optical remote sensing validation schemes includes also description of a multiscale validation concept and its advantages. Impacts of intraspecific and interspecific variability on collected field and laboratory measurements of leaf biochemical traits and optical properties are demonstrated for selected plant species, and field measurement uncertainty sources are listed and discussed specifically for foliar pigments and canopy leaf area index. The review concludes with the main findings and suggestions as how to reduce uncertainties and include variability in scaling vegetation imaging spectroscopy signals and functional traits of single leaves up to observations of whole canopies.