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BACKGROUND: Breast cancer remains a leading cause of female mortality worldwide, exacerbated by limited awareness, inadequate screening resources, and treatment options. Accurate and early diagnosis is crucial for improving survival rates and effective treatment. OBJECTIVES: This study aims to develop an innovative artificial intelligence (AI) based model for predicting breast cancer and its various histopathological grades by integrating multiple biomarkers and subject age, thereby enhancing diagnostic accuracy and prognostication. METHODS: A novel ensemble-based machine learning (ML) framework has been introduced that integrates three distinct biomarkers-beta-human chorionic gonadotropin (ß-hCG), Programmed Cell Death Ligand 1 (PD-L1), and alpha-fetoprotein (AFP)-alongside subject age. Hyperparameter optimization was performed using the Particle Swarm Optimization (PSO) algorithm, and minority oversampling techniques were employed to mitigate overfitting. The model's performance was validated through rigorous five-fold cross-validation. RESULTS: The proposed model demonstrated superior performance, achieving a 97.93% accuracy and a 98.06% F1-score on meticulously labeled test data across diverse age groups. Comparative analysis showed that the model outperforms state-of-the-art approaches, highlighting its robustness and generalizability. CONCLUSION: By providing a comprehensive analysis of multiple biomarkers and effectively predicting tumor grades, this study offers a significant advancement in breast cancer screening, particularly in regions with limited medical resources. The proposed framework has the potential to reduce breast cancer mortality rates and improve early intervention and personalized treatment strategies.
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Background: Agar plate analysis is vital for microbiological testing in industries like food, pharmaceuticals, and biotechnology. Manual inspection is slow, laborious, and error-prone, while existing automated systems struggle with the complexity of real-world agar plates. A shortage of diverse datasets hinders the development and evaluation of robust automated systems. Methods: In this paper, two new annotated datasets and a novel methodology for synthetic agar plate generation are presented. The datasets comprise 854 images of cultivated agar plates and 1,588 images of empty agar plates, encompassing various agar plate types and microorganisms. These datasets are an extension of the publicly available BRUKERCOLONY dataset, collectively forming one of the largest publicly available annotated datasets for research. The methodology is based on an efficient image generation pipeline that also simulates cultivation-related phenomena such as haemolysis or chromogenic reactions. Results: The augmentations significantly improved the Dice coefficient of trained U-Net models, increasing it from 0.671 to 0.721. Furthermore, training the U-Net model with a combination of real and 150% synthetic data demonstrated its efficacy, yielding a remarkable Dice coefficient of 0.729, a substantial improvement from the baseline of 0.518. UNet3+ exhibited the highest performance among the U-Net and Attention U-Net architectures, achieving a Dice coefficient of 0.767. Conclusions: Our experiments showed the methodology's applicability to real-world scenarios, even with highly variable agar plates. Our paper contributes to automating agar plate analysis by presenting a new dataset and effective methodology, potentially enhancing fully automated microbiological testing.
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RATIONALE: Persistent respiratory symptoms following Coronavirus Disease 2019 (COVID-19) are associated with residual radiological changes in lung parenchyma, with a risk of development into lung fibrosis, and with impaired pulmonary function. Previous studies hinted at the possible efficacy of corticosteroids (CS) in facilitating the resolution of post-COVID residual changes in the lungs, but the available data is limited. AIM: To evaluate the effects of CS treatment in post-COVID respiratory syndrome patients. PATIENTS AND METHODS: Post-COVID patients were recruited into a prospective single-center observational study and scheduled for an initial (V1) and follow-up visit (V2) at the Department of Respiratory Medicine and Tuberculosis, University Hospital Olomouc, comprising of pulmonary function testing, chest x-ray, and complex clinical examination. The decision to administer CS or maintain watchful waiting (WW) was in line with Czech national guidelines. RESULTS: The study involved 2729 COVID-19 survivors (45.7% male; mean age: 54.6). From 2026 patients with complete V1 data, 131 patients were indicated for CS therapy. These patients showed significantly worse radiological and functional impairment at V1. Mean initial dose was 27.6 mg (SD ± 10,64), and the mean duration of CS therapy was 13.3 weeks (SD ± 10,06). Following therapy, significantly better improvement of static lung volumes and transfer factor for carbon monoxide (DLCO), and significantly better rates of good or complete radiological and subjective improvement were observed in the CS group compared to controls with available follow-up data (n = 894). CONCLUSION: Better improvement of pulmonary function, radiological findings and subjective symptoms were observed in patients CS compared to watchful waiting. Our findings suggest that glucocorticoid therapy could benefit selected patients with persistent dyspnea, significant radiological changes, and decreased DLCO.
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Background and Objective: Severe courses of COVID-19 disease can lead to long-term complications. The post-acute phase of COVID-19 refers to the persistent or new symptoms. This problem is becoming more relevant with the increasing number of patients who have contracted COVID-19 and the emergence of new virus variants. In this case, preventive treatment with corticosteroids can be applied. However, not everyone benefits from the treatment, moreover, it can have severe side effects. Currently, no study would analyze who benefits from the treatment. Methods: This work introduces a novel approach to the recommendation of Corticosteroid (CS) treatment for patients in the post-acute phase. We have used a novel combination of clinical data, including blood tests, spirometry, and X-ray images from 273 patients. These are very challenging to collect, especially from patients in the post-acute phase of COVID-19. To our knowledge, no similar dataset exists in the literature. Moreover, we have proposed a unique methodology that combines machine learning and deep learning models based on Vision Transformer (ViT) and InceptionNet, preprocessing techniques, and pretraining strategies to deal with the specific characteristics of our data. Results: The experiments have proved that combining clinical data with CXR images achieves 8% higher accuracy than independent analysis of CXR images. The proposed method reached 80.0% accuracy (78.7% balanced accuracy) and a ROC-AUC of 0.89. Conclusions: The introduced system for CS treatment prediction using our neural network and learning algorithm is unique in this field of research. Here, we have shown the efficiency of using mixed data and proved it on real-world data. The paper also introduces the factors that could be used to predict long-term complications. Additionally, this system was deployed to the hospital environment as a recommendation tool, which admits the clinical application of the proposed methodology.
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Pulmonary fibrosis is one of the most severe long-term consequences of COVID-19. Corticosteroid treatment increases the chances of recovery; unfortunately, it can also have side effects. Therefore, we aimed to develop prediction models for a personalized selection of patients benefiting from corticotherapy. The experiment utilized various algorithms, including Logistic Regression, k-NN, Decision Tree, XGBoost, Random Forest, SVM, MLP, AdaBoost, and LGBM. In addition easily human-interpretable model is presented. All algorithms were trained on a dataset consisting of a total of 281 patients. Every patient conducted an examination at the start and three months after the post-COVID treatment. The examination comprised a physical examination, blood tests, functional lung tests, and an assessment of health state based on X-ray and HRCT. The Decision tree algorithm achieved balanced accuracy (BA) of 73.52%, ROC-AUC of 74.69%, and 71.70% F1 score. Other algorithms achieving high accuracy included Random Forest (BA 70.00%, ROC-AUC 70.62%, 67.92% F1 score) and AdaBoost (BA 70.37%, ROC-AUC 63.58%, 70.18% F1 score). The experiments prove that information obtained during the initiation of the post-COVID-19 treatment can be used to predict whether the patient will benefit from corticotherapy. The presented predictive models can be used by clinicians to make personalized treatment decisions.
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AIMS: The study analysed post-acute COVID-19 symptoms and the pulmonary function test (PFT) results in patients surviving the native strain of the virus. METHODS: The study was prospective; the inclusion criteria were positive PCR test for SARS-CoV-2 and age 18-100. Exclusion criteria were active respiratory infection, known or suspicious pre-existing pulmonary disease, cardiac failure, recent or acute pulmonary embolism, anaemia, and neuromuscular diseases. The recruitment period was 1st March 2020 - 25th December 2020. The initial examination was performed 4-12 weeks after the disease onset. All subjects underwent physical examination, anamnesis, chest x-ray and PFT. RESULTS: The study involved 785 subjects (345 male) mean age 53.8 (SD 14.6). The disease severity groups were: mild (G1), moderate (G2) and severe/critical (G3). Anosmia was present in the acute disease phase in 45.2% of G1 patients, but only in 4.5% of G3 patients. Dyspnoea occurred frequently in more severe groups (40%, 51.8% and 63.7% for G1, G2 and G3 respectively), while cough and fatigue showed no relationship to disease severity. Females were more likely to experience persistent symptoms. PFT results were significantly decreased in more severe groups compared to the mild COVID-19 patients, diffusing capacity was 86.3%, 79% and 68% of predicted values in G1, G2 and G3 respectively. CONCLUSION: Anosmia during the acute phase was associated with mild disease, persisting dyspnoea was more frequent after more severe COVID-19. Females tended to have persisting symptoms in post-acute phase more frequently. PFT results showed decrease with disease severity.
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COVID-19 , Femenino , Humanos , Masculino , Persona de Mediana Edad , Adolescente , Adulto Joven , Adulto , Anciano , Anciano de 80 o más Años , COVID-19/complicaciones , COVID-19/diagnóstico , SARS-CoV-2 , Estudios Prospectivos , Anosmia , Pruebas de Función Respiratoria , Disnea/etiologíaRESUMEN
BACKGROUND AND OBJECTIVES: Microscopic images are an important part for haematologists in diagnosing various diseases in the blood cell. Changes in blood cells are caused by malaria disease, and early diagnosis can prevent the disease from entering its severe stage. METHODS: In this paper, an automated non-invasive and efficient deep learning-based framework is developed for multi-class plasmodium vivax life cycle classification and malaria diagnosis. A multi-class microscopic blood cell of different plasmodium vivax life cycle stage dataset is analysed, and a diagnostic framework is designed. Several stages of the disease are examined and augmented through various techniques to make the framework robust in real-time. Generative adversarial network is specially designed to generate extended training samples of various life cycle stages to increase robustness of the resulting model. A special transformer-based neural network vision transformer is designed to improve generalisation capabilities. Microscopic images are classified into multi classes of plasmodium vivax life cycle stage, where the keystone transformer layers extract relevant disease features from microscopic colour images, and the extracted relevant features are used to make predictive diagnostic decisions. RESULTS: The capabilities of the vision transformer are computed and analysed by statistical parameters, and the performance of the vision transformer model is compared with baseline architectures, where it was evident that the performance of the vision transformer was significantly better, reaching 90.03% accuracy. CONCLUSIONS: A comprehensive comparison of the proposed framework to the state-of-the-art methods proves its efficiency in the classification of plasmodium vivax life cycle for malaria disease identification through thin blood smear microscopic images.
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Malaria , Plasmodium vivax , Animales , Técnicas Histológicas , Estadios del Ciclo de VidaRESUMEN
BACKGROUND AND OBJECTIVES: The lack of medical facilities in isolated areas makes many patients remain aloof from quick and timely diagnosis of cardiovascular diseases, leading to high mortality rates. A deep learning based method for automatic diagnosis of multiple cardiac diseases from Phonocardiogram (PCG) signals is proposed in this paper. METHODS: The proposed system is a combination of deep learning based convolutional neural network (CNN) and power spectrogram Cardi-Net, which can extract deep discriminating features of PCG signals from the power spectrogram to identify the diseases. The choice of Power Spectral Density (PSD) makes the model extract highly discriminatory features significant for the multi-classification of four common cardiac disorders. RESULTS: Data augmentation techniques are applied to make the model robust, and the model undergoes 10-fold cross-validation to yield an overall accuracy of 98.879% on the test dataset to diagnose multi heart diseases from PCG signals. CONCLUSION: The proposed model is completely automatic, where signal pre-processing and feature engineering are not required. The conversion time of power spectrogram from PCG signals is very low range from 0.10 s to 0.11 s. This reduces the complexity of the model, making it highly reliable and robust for real-time applications. The proposed architecture can be deployed on cloud and a low cost processor, desktop, android app leading to proper access to the dispensaries in remote areas.
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Enfermedades Cardiovasculares , Cardiopatías , Cardiopatías/diagnóstico por imagen , Humanos , Redes Neurales de la Computación , Extractos Vegetales , Procesamiento de Señales Asistido por ComputadorRESUMEN
The classification of bioimages plays an important role in several biological studies, such as subcellular localisation, phenotype identification and other types of histopathological examinations. The objective of the present study was to develop a computer-aided bioimage classification method for the classification of bioimages across nine diverse benchmark datasets. A novel algorithm was developed, which systematically fused the features extracted from nine different convolution neural network architectures. A systematic fusion of features boosts the performance of a classifier but at the cost of the high dimensionality of the fused feature set. Therefore, non-discriminatory and redundant features need to be removed from a high-dimensional fused feature set to improve the classification performance and reduce the time complexity. To achieve this aim, a method based on analysis of variance and evolutionary feature selection was developed to select an optimal set of discriminatory features from the fused feature set. The proposed method was evaluated on nine different benchmark datasets. The experimental results showed that the proposed method achieved superior performance, with a significant reduction in the dimensionality of the fused feature set for most bioimage datasets. The performance of the proposed feature selection method was better than that of some of the most recent and classical methods used for feature selection. Thus, the proposed method was desirable because of its superior performance and high compression ratio, which significantly reduced the computational complexity.
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Algoritmos , Redes Neurales de la ComputaciónRESUMEN
The COVID-19 pandemic has wreaked havoc globally and still persists even after a year of its initial outbreak. Several reasons can be considered: people are in close contact with each other, i.e., at a short range (1 m), and the healthcare system is not sufficiently developed or does not have enough facilities to manage and fight the pandemic, even in developed countries such as the USA and the U.K. and countries in Europe. There is a great need in healthcare for remote monitoring of COVID-19 symptoms. In the past year, a number of IoT-based devices and wearables have been introduced by researchers, providing good results in terms of high accuracy in diagnosing patients in the prodromal phase and in monitoring the symptoms of patients, i.e., respiratory rate, heart rate, temperature, etc. In this systematic review, we analyzed these wearables and their need in the healthcare system. The research was conducted using three databases: IEEE Xplore®, Web of Science®, and PubMed Central®, between December 2019 and June 2021. This article was based on the PRISMA guidelines. Initially, 1100 articles were identified while searching the scientific literature regarding this topic. After screening, ultimately, 70 articles were fully evaluated and included in this review. These articles were divided into two categories. The first one belongs to the on-body sensors (wearables), their types and positions, and the use of AI technology with ehealth wearables in different scenarios from screening to contact tracing. In the second category, we discuss the problems and solutions with respect to utilizing these wearables globally. This systematic review provides an extensive overview of wearable systems for the remote management and automated assessment of COVID-19, taking into account the reliability and acceptability of the implemented technologies.
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COVID-19 , Dispositivos Electrónicos Vestibles , Humanos , Pandemias , Reproducibilidad de los Resultados , SARS-CoV-2RESUMEN
Glioma is the most pernicious cancer of the nervous system, with histological grade influencing the survival of patients. Despite many studies on the multimodal treatment approach, survival time remains brief. In this study, a novel two-stage ensemble of an ensemble-type machine learning-based predictive framework for glioma detection and its histograde classification is proposed. In the proposed framework, five characteristics belonging to 135 subjects were considered: human telomerase reverse transcriptase (hTERT), chitinase-like protein (YKL-40), interleukin 6 (IL-6), tissue inhibitor of metalloproteinase-1 (TIMP-1) and neutrophil/lymphocyte ratio (NLR). These characteristics were examined using distinctive ensemble-based machine learning classifiers and combination strategies to develop a computer-aided diagnostic system for the non-invasive prediction of glioma cases and their grade. In the first stage, the analysis was conducted to classify glioma cases and control subjects. Machine learning approaches were applied in the second stage to classify the recognised glioma cases into three grades, from grade II, which has a good prognosis, to grade IV, which is also known as glioblastoma. All experiments were evaluated with a five-fold cross-validation method, and the classification results were analysed using different statistical parameters. The proposed approach obtained a high value of accuracy and other statistical parameters compared with other state-of-the-art machine learning classifiers. Therefore, the proposed framework can be utilised for designing other intervention strategies for the prediction of glioma cases and their grades.
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Neoplasias Encefálicas , Glioma , Aprendizaje Automático , Neoplasias Encefálicas/diagnóstico , Glioma/diagnóstico , Humanos , Imagen por Resonancia Magnética , Clasificación del TumorRESUMEN
Today, ensuring work safety is considered to be one of the top priorities for various industries. Workplace injuries, illnesses, and deaths often entail substantial production and financial losses, governmental checks, series of dismissals, and loss of reputation. Wearable devices are one of the technologies that flourished with the fourth industrial revolution or Industry 4.0, allowing employers to monitor and maintain safety at workplaces. The purpose of this article is to systematize knowledge in the field of industrial wearables' safety to assess the relevance of their use in enterprises as the technology maintaining occupational safety, to correlate the benefits and costs of their implementation, and, by identifying research gaps, to outline promising directions for future work in this area. We categorize industrial wearable functions into four classes (monitoring, supporting, training, and tracking) and provide a classification of the metrics collected by wearables to better understand the potential role of wearable technology in preserving workplace safety. Furthermore, we discuss key communication technologies and localization techniques utilized in wearable-based work safety solutions. Finally, we analyze the main challenges that need to be addressed to further enable and support the use of wearable devices for industrial work safety.
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Salud Laboral , Dispositivos Electrónicos Vestibles , Monitoreo Fisiológico , Encuestas y Cuestionarios , Lugar de TrabajoRESUMEN
Cervical cancer is still one of the most prevalent cancers in women and a significant cause of mortality. Cytokine gene variants and socio-demographic characteristics have been reported as biomarkers for determining the cervical cancer risk in the Indian population. This study was designed to apply a machine learning-based model using these risk factors for better prognosis and prediction of cervical cancer. This study includes the dataset of cytokine gene variants, clinical and socio-demographic characteristics of normal healthy control subjects, and cervical cancer cases. Different risk factors, including demographic details and cytokine gene variants, were analysed using different machine learning approaches. Various statistical parameters were used for evaluating the proposed method. After multi-step data processing and random splitting of the dataset, machine learning methods were applied and evaluated with 5-fold cross-validation and also tested on the unseen data records of a collected dataset for proper evaluation and analysis. The proposed approaches were verified after analysing various performance metrics. The logistic regression technique achieved the highest average accuracy of 82.25% and the highest average F1-score of 82.58% among all the methods. Ridge classifiers and the Gaussian Naïve Bayes classifier achieved the highest sensitivity-85%. The ridge classifier surpasses most of the machine learning classifiers with 84.78% accuracy and 97.83% sensitivity. The risk factors analysed in this study can be taken as biomarkers in developing a cervical cancer diagnosis system. The outcomes demonstrate that the machine learning assisted analysis of cytokine gene variants and socio-demographic characteristics can be utilised effectively for predicting the risk of developing cervical cancer.
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Neoplasias del Cuello Uterino , Teorema de Bayes , Citocinas/genética , Demografía , Femenino , Humanos , Aprendizaje Automático , Neoplasias del Cuello Uterino/epidemiología , Neoplasias del Cuello Uterino/genéticaRESUMEN
The use of image processing tools, machine learning, and deep learning approaches has become very useful and robust in recent years. This paper introduces the detection of the Nosema disease, which is considered to be one of the most economically significant diseases today. This work shows a solution for recognizing and identifying Nosema cells between the other existing objects in the microscopic image. Two main strategies are examined. The first strategy uses image processing tools to extract the most valuable information and features from the dataset of microscopic images. Then, machine learning methods are applied, such as a neural network (ANN) and support vector machine (SVM) for detecting and classifying the Nosema disease cells. The second strategy explores deep learning and transfers learning. Several approaches were examined, including a convolutional neural network (CNN) classifier and several methods of transfer learning (AlexNet, VGG-16 and VGG-19), which were fine-tuned and applied to the object sub-images in order to identify the Nosema images from the other object images. The best accuracy was reached by the VGG-16 pre-trained neural network with 96.25%.
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Nosema , Procesamiento de Imagen Asistido por Computador , Aprendizaje Automático , Redes Neurales de la Computación , Máquina de Vectores de SoporteRESUMEN
The lethal novel coronavirus disease 2019 (COVID-19) pandemic is affecting the health of the global population severely, and a huge number of people may have to be screened in the future. There is a need for effective and reliable systems that perform automatic detection and mass screening of COVID-19 as a quick alternative diagnostic option to control its spread. A robust deep learning-based system is proposed to detect the COVID-19 using chest X-ray images. Infected patient's chest X-ray images reveal numerous opacities (denser, confluent, and more profuse) in comparison to healthy lungs images which are used by a deep learning algorithm to generate a model to facilitate an accurate diagnostics for multi-class classification (COVID vs. normal vs. bacterial pneumonia vs. viral pneumonia) and binary classification (COVID-19 vs. non-COVID). COVID-19 positive images have been used for training and model performance assessment from several hospitals of India and also from countries like Australia, Belgium, Canada, China, Egypt, Germany, Iran, Israel, Italy, Korea, Spain, Taiwan, USA, and Vietnam. The data were divided into training, validation and test sets. The average test accuracy of 97.11 ± 2.71% was achieved for multi-class (COVID vs. normal vs. pneumonia) and 99.81% for binary classification (COVID-19 vs. non-COVID). The proposed model performs rapid disease detection in 0.137 s per image in a system equipped with a GPU and can reduce the workload of radiologists by classifying thousands of images on a single click to generate a probabilistic report in real-time.
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BACKGROUND AND OBJECTIVES: Cardiovascular diseases are critical diseases and need to be diagnosed as early as possible. There is a lack of medical professionals in remote areas to diagnose these diseases. Artificial intelligence-based automatic diagnostic tools can help to diagnose cardiac diseases. This work presents an automatic classification method using machine learning to diagnose multiple cardiac diseases from phonocardiogram signals. METHODS: The proposed system involves a convolutional neural network (CNN) model because of its high accuracy and robustness to automatically diagnose the cardiac disorders from the heart sounds. To improve the accuracy in a noisy environment and make the method robust, the proposed method has used data augmentation techniques for training and multi-classification of multiple cardiac diseases. RESULTS: The model has been validated both heart sound data and augmented data using n-fold cross-validation. Results of all fold have been shown reported in this work. The model has achieved accuracy on the test set up to 98.60% to diagnose multiple cardiac diseases. CONCLUSIONS: The proposed model can be ported to any computing devices like computers, single board computing processors, android handheld devices etc. To make a stand-alone diagnostic tool that may be of help in remote primary health care centres. The proposed method is non-invasive, efficient, robust, and has low time complexity making it suitable for real-time applications.
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Cardiopatías , Ruidos Cardíacos , Inteligencia Artificial , Cardiopatías/diagnóstico por imagen , Humanos , Aprendizaje Automático , Redes Neurales de la ComputaciónRESUMEN
In this work, we proposed a new data acquisition approach that significantly improves the repetition rates of Laser-Induced Breakdown Spectroscopy (LIBS) experiments, where high-end echelle spectrometers and intensified detectors are commonly used. The moderate repetition rates of recent LIBS systems are caused by the utilization of intensified detectors and their slow full frame (i.e. echellogram) readout speeds with consequent necessity for echellogram-to-1D spectrum conversion (intensity vs. wavelength). Therefore, we investigated a new methodology where only the most effective pixels of the echellogram were selected and directly used in the LIBS experiments. Such data processing resulted in significant variable down-selection (more than four orders of magnitude). Samples of 50 sedimentary ores samples (distributed in 13 ore types) were analyzed by LIBS system and then classified by linear and non-linear Multivariate Data Analysis algorithms. The utilization of selected pixels from an echellogram yielded increased classification accuracy compared to the utilization of common 1D spectra.
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Glaucoma is a disease of the retina which is one of the most common causes of permanent blindness worldwide. This paper presents an automatic image processing based method for glaucoma diagnosis from the digital fundus image. In this paper wavelet feature extraction has been followed by optimized genetic feature selection combined with several learning algorithms and various parameter settings. Unlike the existing research works where the features are considered from the complete fundus or a sub image of the fundus, this work is based on feature extraction from the segmented and blood vessel removed optic disc to improve the accuracy of identification. The experimental results presented in this paper indicate that the wavelet features of the segmented optic disc image are clinically more significant in comparison to features of the whole or sub fundus image in the detection of glaucoma from fundus image. Accuracy of glaucoma identification achieved in this work is 94.7% and a comparison with existing methods of glaucoma detection from fundus image indicates that the proposed approach has improved accuracy of classification.
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Algoritmos , Glaucoma/patología , Interpretación de Imagen Asistida por Computador/métodos , Disco Óptico/patología , Reconocimiento de Normas Patrones Automatizadas/métodos , Retinoscopía/métodos , Adolescente , Adulto , Anciano , Femenino , Humanos , Aumento de la Imagen/métodos , Aprendizaje Automático , Masculino , Persona de Mediana Edad , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Técnica de Sustracción , Análisis de Ondículas , Adulto JovenRESUMEN
To stimulate progress in automating the reconstruction of neural circuits, we organized the first international challenge on 2D segmentation of electron microscopic (EM) images of the brain. Participants submitted boundary maps predicted for a test set of images, and were scored based on their agreement with a consensus of human expert annotations. The winning team had no prior experience with EM images, and employed a convolutional network. This "deep learning" approach has since become accepted as a standard for segmentation of EM images. The challenge has continued to accept submissions, and the best so far has resulted from cooperation between two teams. The challenge has probably saturated, as algorithms cannot progress beyond limits set by ambiguities inherent in 2D scoring and the size of the test dataset. Retrospective evaluation of the challenge scoring system reveals that it was not sufficiently robust to variations in the widths of neurite borders. We propose a solution to this problem, which should be useful for a future 3D segmentation challenge.
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This article describes a novel method for highly accurate and effective localization of the transverse section of the carotis comunis artery in ultrasound images. The method has a high success rate, approximately 97%. Unlike analytical methods based on geometric descriptions of the object sought, the method proposed here can cover a large area of shape variation of the artery under study, which normally occurs during examinations as a result of the pressure on the examined tissue, tilt of the probe, setup of the sonographic device, and other factors. This method shows great promise in automating the process of determining circulatory system parameters in the non-invasive clinical diagnostics of cardiovascular diseases. The method employs a Viola-Jones detector that has been specially adapted for efficient detection of transverse sections of the carotid artery. This algorithm is trained on a set of labeled images using the AdaBoost algorithm, Haar-like features and the Matthews coefficient. The training algorithm of the artery detector was modified using evolutionary algorithms. The method for training a cascade of classifiers achieves on a small number of positive and negative training data samples (about 500 images) a high success rate in a computational time that allows implementation of the detector in real time. Testing was performed on images of different patients for whom different ultrasonic instruments were used under different conditions (settings) so that the algorithm developed is applicable in general radiologic practice.