Draft genome sequence data on Bacillus safensis U41 isolated from soils of Santiniketan, India.

The draft genome sequence of an isolate of Bacillus safensis U41 from the soils of Santiniketan (23040'12″ N and 87039'52″ E) is reported here. Bacillus safensis is a bacterium that produces cellulases, which is essential for the breakdown of plant biomass. As such, it is a valuable source of digestive enzymes from plant biomass, especially cellulases. The genomic DNA was extracted from a single colony using a QIAgen Blood and Tissue kit (QIAgen Inc., Canada). Sequencing was performed via Illumina HiSeq X using 2 × 150 paired-end chemistry, generating 7,352,576 reads with sequence coverage of 509x. The assembly produced 20 contigs over 200 base pairs (bp) in length, with an N50 value of 901304 and an L50 of 2. The genome size was 3,732,407 bp, and the average GC content was 41.43 %. Genome annotation and gene predictions were performed using Prokka v.1.14.6, which identified 3783 coding sequences, 64 tRNA genes, and 3 rRNA genes.

Effect of thermal and NaOH pretreatment on water hyacinth to enhance the biogas production.

Water hyacinth (WH) is used as the substrate for biogas production due to its high lignocellulosic composition and natural abundance. The present study used thermal and chemical (alkali) pretreatment techniques to enhance biogas production from water hyacinth used as a substrate by anaerobic digestion. Thermal pretreatment was done using an autoclave at 121 °C and 15 lb (2 bar) pressure and alkali pretreatment by NaOH at two concentrations (2% and 5% w/v). The inoculum:substrate ratio for biogas production was 2:1, where cow dung was used as inoculum. Results indicated that the pretreatments increased biomass degradability and improved biogas production. Water hyacinth pretreated with 5% NaOH produced the highest amount of biogas (142.61 L/Kg VS) with a maximum methane content of 64.59%. The present study found that alkali pretreatment can modify the chemical structure and enhance WH hydrolysis, leading to enhanced energy production.

Biogas production potential of aquatic weeds as the next-generation feedstock for bioenergy production: a review.

Aquatic weeds have exceptionally high reproduction rates, are rich in cellulose and hemicellulose, and contain a negligible amount of lignin, making them an ideal crop for the next generation of biofuels. Previously reported studies proposed that water hyacinth, water lettuce, common duckweeds, and water spinach can be managed or utilized using different advanced techniques; from them, anaerobic digestion is one of the feasible and cost-effective techniques to manage these biowastes. The present study was carried out to investigate the potential of utilizing four common aquatic weed species (water hyacinth, water lettuce, common duckweeds, and water spinach) as substrates for anaerobic digestion in order to produce biogas for use in biofuels. The high reproduction rates and high cellulose and hemicellulose content, coupled with low lignin content, of these aquatic weeds make them ideal candidates for this purpose. The study evaluated the feasibility of using anaerobic digestion as a management technique for these aquatic weeds, which are often considered invasive and difficult to control. The results from various studies indicate that these aquatic weeds are productive feedstock options for anaerobic digestion, yielding a high biogas output. Among the aquatic weeds studied, water hyacinth, water lettuce, and common duckweeds exhibit higher methane production compared to water spinach. The study provides an overview of the characteristics and management strategies of these aquatic weeds in relation to biogas production, with possible future developments in the field.

Consumption of Pila globosa (Swainson) collected from organophosphate applied paddy fields: human health risks.

Unregulated use of chlorpyrifos (CPF) and monocrotophos (MCP) in agriculture casts adverse effects on non-target freshwater mollusc, Pila globosa and humans. Levels of CPF and MCP were assessed in the paddy field from the edible foot tissue of apple snail (Pila globosa) exposed to low (1.5 ml l-1 water) and high (2.5 ml l-1 water) agricultural doses for 48 h to determine human health risk associated with consumption of tissue. CPF and MCP were extracted by liquid-liquid extraction and analysed by QuEChERS method using GC-MS/MS. For low and high concentrations of CPF exposure, the pesticide residue levels in the paddy field water ranged from 4.43 to 1.08 and 5.13 to 1.53 µg l-1, respectively, whereas, for low and high concentrations of MCP exposure, the residue levels in water ranged from 16.43 to 5.78 and 31.41 to 9. 27 µg l-1, respectively, for 3-48 h. In the foot tissue, residues ranged from 4.36 to 15.54 µg kg-1 for low-dose CPF, 7.1 to 18.05 µg kg-1for high-dose CPF and from 5.28 to 12.3 µg kg-1 and 8.94 to 18.21 µg kg-1 for low and high dose of MCP, respectively, during 3 to 48 h of exposure. Pesticides in the tissue were lower than the recommended maximum residue limits. Estimated health risk for adults and children revealed that the estimated daily intake values did not exceed the threshold values of acceptable daily intake. Non-carcinogenic and carcinogenic health effects were less than the safe value of 1.0 and 1 × 10-6, respectively, suggesting that CPF and MCP residues from ingestion of apple snail posed low risks to both children and adults. This preliminary result suggests regular monitoring of pesticides residues in Pila globosa collected from the paddy field of India.

Enhanced biogas production from Lantana camara via bioaugmentation of cellulolytic bacteria.

A study was designed to isolate cellulolytic bacteria from termite-gut and soil, optimizing their cellulase production to enhance biogas generation, using Lantana camara as a substrate. Out of 57 bacteria screened, two isolates DSB1 and DSB12, showed significant cellulolytic activity. 16S rRNA based methods identified these isolates as Microbacterium sp. and Arthrobacter sp. respectively. Maximum cellulase activity of 1.26 ± 0.044 U/ml and 1.31 ± 0.052 U/ml for DSB1 and DSB12 was observed at pH 7 and 7.2 under 35°C and 37°C, respectively. The L. camara biomass substrate with cow dung as an inoculum, bioaugmented with DSB1 and DSB12 separately, was tested for biogas production, producing 950 l/kg and 980 l/kg VS biogas with 57% and 60% methane, respectively. DSB1 and DSB12 revealed as potent cellulase producers that can be harnessed in the anaerobic digester for biomass conversion practices for enhanced biogas production.

A Bacillus strain TCL isolated from Jharia coalmine with remarkable stress responses, chromium reduction capability and bioremediation potential.

Microbial reduction of Cr(VI) to Cr(III) can mitigate environmental chromium toxicity. A chromium, cadmium and nickel tolerating strain TCL with 97% 16S rRNA gene sequence homology to Bacillus cereus was isolated from a derelict open-cast, Tasra Coalmine Lake of Jharia, India. It could tolerate up to Cr2000 [2,000 mg L-1 Cr(VI)] and completely reduce Cr200 within 16 h under heterotrophic condition. TCL grown in ≥ Cr500 exhibited multifarious stress responses particularly in its prolonged lag-phase, like cell aggregation, up to two-fold elongation, increased exopolysaccharide production, and stress enzyme activities. These were relieved by increasing inoculum size or nutrient content. Chromium reduction was constitutive, with maximum activities detected in loosely-bound exopolysaccharides and membrane fractions, followed by cytoplasm and spent media. Cr(VI) was efficiently reduced to Cr(III) and >90% was released in spent media. Cells also expressed Cr-induced active efflux pumps. Growing cells or its crude enzyme extracts could efficiently reduce Cr(VI) in diverse temperatures (15-45 °C), pH (5-9); and in presence of other metals (Cd, Cu, Mo, Ni, Pb), oxyanions (SO4-2, NO2-), and metabolic inhibitors (phenol, NaN3, EDTA). Growth and reduction were also detected in nutrient-limited minimal salt media, and contaminated leather industry effluent thereby making TCL a potential candidate for bioremediation.

Influence of volatile fatty acids in different inoculum to substrate ratio and enhancement of biogas production using water hyacinth and salvinia.

The aim of the study was to explore the role of volatile fatty acids in batch scale anaerobic digestion of two potential aquatic weeds (water hyacinth and salvinia), as substrates for anaerobic digestion. Inoculum (cow dung) to biomass (aquatic weeds) ratio of 0.25:1, 0.5:1, 1:1 and 3:1 were taken and monitored in a 2 L digester for 30 days. The maximum amount of biogas produced for was 406 L kg-1 VS for water hyacinth in 0.5:1 and 330 L kg-1 VS for salvinia in 1:1 and 3:1 ratio for both. The total VFA for water hyacinth and salvinia were 410 mgL-1 & 365 mg L-1, 424 mg L-1 & 316 mg L-1, 272 mg L-1 & 234 mg L-1 and 158 mg L-1 & 94 mg L-1 in 0.25:1, 0.5:1, 1:1 and 3:1 ratios respectively. Multiple linear regression was performed to find the relationship between the methane from biogas, total VFA, acetic acid and propionic acid for enhanced biogas production. It was observed that total VFA significantly influenced methane content in 1:1 (SC) and 3:1 (WC).

An overview of physico-chemical mechanisms of biogas production by microbial communities: a step towards sustainable waste management.

Biogas is a combination of methane, CO2, nitrogen, H2S and traces of few other gases. Almost any organic waste can be biologically transformed into biogas and other energy-rich organic compounds through the process of anaerobic digestion (AD) and thus helping in sustainable waste management. Although microbes are involved in each step of AD, knowledge about those microbial consortia is limited due to the lack of phylogenetic and metabolic data of predominantly unculturable microorganisms. However, culture-independent methods like PCR-based ribotyping has been successfully employed to get information about the microbial consortia involved in AD. Microbes identified have been found to belong mainly to the bacterial phyla of Proteobacteria, Chloroflexi, Firmicutes and Bacteroidetes. Among the archaeal population, the majority have been found to be methanogens (mainly unculturable), the remaining being thermophilic microbes. Thus, the AD process as a whole could be controlled by regulating the microbial consortia involved in it. Optimization in the feedstock, pH, temperature and other physical parameters would be beneficial for the microbial growth and viability and thus helpful for biogas production in AD. Besides, the biogas production is also dependent upon the activity of several key genes, ion-specific transporters and enzymes, like genes coding for methyl-CoM reductase, formylmethanofuran transferase, formate dehydrogenase present in the microbes. Fishing for these high-efficiency genes will ultimately increase the biogas production and sustain the production plant.

In vitro callus culture of Heliotropium indicum Linn. for assessment of total phenolic and flavonoid content and antioxidant activity.

The total phenolic and flavonoid content and percentage of 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity of callus and in vivo plant parts of Heliotropium indicum Linn. were estimated. Murashige and Skoog (MS) basal medium supplemented with α-naphthaleneacetic acid (NAA) 2.0 mg/l with benzyladenine (BA) 0.5 mg/l showed the highest amount of callus biomass (1.87 g/tube). The morphology of callus was significantly different according to the plant growth regulators and their concentrations used in the medium. The highest amount of total phenolic (21.70 mg gallic acid equivalent per gram (GAE/g)) and flavonoid (4.90 mg quercetin equivalent per gram (QE/g)) content and the maximum percentage (77.78 %) of radical scavenging activity were estimated in the extract of inflorescence. The synergistic effect of NAA (2.0 mg/l) and BA (0.5 mg/l) enhances the synthesis of total phenolic (9.20 mg GAE/g) and flavonoid (1.25 mg QE/g) content in the callus tissue. The callus produced by the same concentration shows 45.24 % of free radical scavenging activity. While comparing the various concentrations of NAA with 2,4-dichlorophenoxyacetic acid (2,4-D) for the production of callus biomass, total phenolic and flavonoid content and free radical scavenging activity, all the concentrations of NAA were found to be superior than those of 2,4-D.

Metallothionein response in earthworms Lampito mauritii (Kinberg) exposed to fly ash.

Among pollutants, the coal fly ash occupies a significant position in industrial wastes. The fly ash matrix is a complex mixture of various organic (polyhalogenated compounds) and inorganic (Si, Al, Fe, As, Cd, Bi, Hg, etc.) chemicals. The application of fly ash for agricultural purposes and as landfills may lead to the contamination of the land with some of the toxic chemical compounds present in fly ash. Thus prior to the application of fly ash for developmental activities, it requires bio-monitoring and risk characterization. In order to achieve this objective adult Lampito mauritii were exposed to different proportions of fly ash in soil for 30 d and the concentrations of metallothionein in earthworm were assessed. The results revealed that up to 50% of fly ash amendment does not apparently harm the earthworm in respect of their survival and growth. A significant increase in tissue metallothionein level was recorded in L. mauritii exposed to fly ash amended soil without tissue metal accumulation indicating that metallothionein is involved in scavenging of free radicals and reactive oxygen species metabolites. It is concluded that this biochemical response observed in L. mauritii exposed to fly ash amended soil could be used in ecotoxicological field monitoring.

The role of earthworm Lampito mauritii (Kinberg) in amending lead and zinc treated soil.

A laboratory experiment was carried out to determine the effect of earthworm (Lampito mauritii) activity on mobility of Pb2+ and Zn2+ in the soil (DTPA-extractable) and its composting potential in presence of these metals. Well clitellate earthworms collected from an uncontaminated site were exposed to different concentrations (75, 150, 300mgkg(-1)) of Pb2+ and Zn2+ separately for 30 days. It was observed that the metal burden in the earthworm tissue increased with the increase in metal treatment. L. mauritii elevated the soil pH of all the metal treated beds and lowered the soil C/N ratio in the cast by reducing the organic carbon and fixing additional nitrogen. Earthworm activity significantly increased the availability of phosphorous, potassium and decreased the amount of DTPA-extractable Pb2+ and Zn2+ in the cast, which implies the immobilization of metals in soils. These findings suggest the use of L. mauritii in amelioration of metal contaminated soil.

Antioxidant responses of the earthworm Lampito mauritii exposed to Pb and Zn contaminated soil.

The aim of this study was to provide fundamental data on the biochemical analysis of antioxidant defences in the earthworm exposed to low levels (75, 150, 300 mg kg(-1) soil) of Pb and Zn. In order to attain this objective, adult Lampito mauritii were exposed to different doses of Pb and Zn separately for 28 days and the concentrations of oxidized and reduced glutathione, activities of glutathione-S-transferase, glutathione peroxidase and glutathione reductase were assessed. Dose-dependent perturbations were observed in the glutathione-glutathione-S-transferase system and other antioxidant enzymes during the early phase of the exposure to Pb. In the Zn exposed earthworm, the glutathione-glutathione-S-transferase system remained stable and the stimulation of glutathione peroxidase and glutathione reductase activities occurred significantly only on day 14 at 300 mg Zn kg(-1). It is concluded that the antioxidants are directly involved in the adaptive response of Lampito mauritii for survival in metal contaminated soil.