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1.
BMC Genomics ; 25(1): 899, 2024 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-39350019

RESUMEN

BACKGROUND: Recombination signal-binding protein for immunoglobulin kappa J region (RBPJ) is a transcriptional regulator that plays an important role in maintaining immune homeostasis. This study aimed to estimate the expression of RBPJ in rheumatoid arthritis (RA) patients and investigate its relationship with RA. METHODS: A total of 83 newly diagnosed RA patients and 70 healthy controls were included. mRNA was extracted from peripheral blood mononuclear cells (PBMCs), and the expression of RBPJ was detected using quantitative real-time PCR (qRT‒PCR). An RA dataset (GSE89408) was obtained from the Gene Expression Omnibus (GEO) database, and RA synovial tissues were divided into two groups. The differentially expressed genes (DEGs) were selected with the "DESeq2" R package. RESULTS: RBPJ expression was lower in RA patients than in health controls and was negatively correlated with the DAS28 score, C-reactive protein (CRP) level and erythrocyte sedimentation rate (ESR). RA synovial tissues from GSE89408 were classified into RBPJ-low (≤ 25%) and RBPJ-high (≥ 75%) groups according to RBPJ expression, and 562 DEGs were identified. Gene Ontology (GO) enrichment analyses revealed that the DEGs significantly affected the regulation of T cell activation and lymphocyte/mononuclear cell differentiation. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed that the most enriched pathways of DEGs were the T cell receptor signaling pathway, Th1/2 and Th17 cell differentiation, the PI3K - Akt signaling pathway and cytokine‒cytokine receptor interaction. CytoHubba Plugin revealed that most of the top 10 genes were involved in osteoclast differentiation, the T cell receptor signaling pathway and cytokine‒cytokine receptor interaction. CONCLUSIONS: RBPJ expression was significantly lower in RA patients and negatively correlated with disease activity. GEO dataset analysis demonstrated that RBPJ may be involved in osteoclast differentiation, T cell activation and differentiation, and the T cell receptor signaling pathway. Our research may contribute to understanding the potential mechanisms by which RBPJ regulates T cell differentiation and cytokine‒cytokine receptor interaction in RA patients.


Asunto(s)
Artritis Reumatoide , Proteína de Unión a la Señal Recombinante J de las Inmunoglobulinas , Humanos , Artritis Reumatoide/genética , Artritis Reumatoide/metabolismo , Femenino , Proteína de Unión a la Señal Recombinante J de las Inmunoglobulinas/genética , Proteína de Unión a la Señal Recombinante J de las Inmunoglobulinas/metabolismo , Masculino , Persona de Mediana Edad , Perfilación de la Expresión Génica , Transducción de Señal , Adulto , Leucocitos Mononucleares/metabolismo , Regulación de la Expresión Génica
2.
Front Microbiol ; 15: 1473238, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-39323883

RESUMEN

Introduction: Weak aerobic stability is a notable challenge for whole-plant corn silage, particularly in hot and humid regions. Acetobacter is commonly regarded as an indicator of aerobic deterioration in silage, yet its precise role in fermentation and during aerobic exposure, as well as the factors that promote its growth, remain insufficiently understood. Methods: In this study, whole-plant corn silage was prepared using a bagged method with controlled dry matter (DM) content at 20%, 25%, and 30%, and initial concentrations of A. pasteurianus at 40%, 50%, and 60%. The silage was stored for 60 days under varying temperatures (20°C, 30°C, and 40°C). Following the anaerobic storage phase, the silage was exposed to air at room temperature (20-25°C) for 7 days, both with and without A. pasteurianus inoculation. Results: The results demonstrated that A. pasteurianus did not impact the nutritional value of the silage during anaerobic fermentation, maintaining a low pH (< 3.80). However, during aerobic exposure, the presence of A. pasteurianus significantly reduced the aerobic stability of the silage. The microbial community shifted from primarily Klebsiella species initially to Lactobacillus and Acetobacter species post-ensiling. During the aerobic exposure phase, A. pasteurianus and A. fabarum became the dominant species. Response Surface Methodology (RSM) analysis identified optimal conditions for the proliferation of A. pasteurianus during the aerobic phase, which occurred at 28°C, 25% DM, and 52% initial concentration at 3 ml/kg. Discussion: These findings confirm that A. pasteurianus plays a critical role in reducing the aerobic stability of whole-plant corn silage. Additionally, the study identifies the optimal conditions that favor the proliferation of A. pasteurianus, offering valuable insights for the development of strategies to prevent and control this bacterium, thereby improving the aerobic stability of silage in hot and humid regions.

3.
iScience ; 27(7): 110344, 2024 Jul 19.
Artículo en Inglés | MEDLINE | ID: mdl-39055942

RESUMEN

This study investigated host responses to long COVID by following up with 89 of the original 144 cohorts for 1-year (N = 73) and 2-year visits (N = 57). Pulmonary long COVID, characterized by fibrous stripes, was observed in 8.7% and 17.8% of patients at the 1-year and 2-year revisits, respectively, while renal long COVID was present in 15.2% and 23.9% of patients, respectively. Pulmonary and renal long COVID at 1-year revisit was predicted using a machine learning model based on clinical and multi-omics data collected during the first month of the disease with an accuracy of 87.5%. Proteomics revealed that lung fibrous stripes were associated with consistent down-regulation of surfactant-associated protein B in the sera, while renal long COVID could be linked to the inhibition of urinary protein expression. This study provides a longitudinal view of the clinical and molecular landscape of COVID-19 and presents a predictive model for pulmonary and renal long COVID.

4.
Front Plant Sci ; 15: 1349641, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38529066

RESUMEN

Introduction: Elymus nutans holds ecological and pastoral significance due to its adaptability and nutritional value, the Qinghai-Tibet Plateau (QTP) is a key hub for its genetic diversity. To conserve and harness its genetic resources in highland ecosystems, a thorough assessment is vital. However, a comprehensive phylogeographic exploration of E. nutans is lacking. The objective of this study was to unravel the genetic diversity, adaptation, and phylogenetics of E. nutans populations. Methods: Encompassing 361 individuals across 35 populations, the species' genetic landscape and dynamic responses to diverse environments were decoded by using four chloroplast DNA (cpDNA) sequences and nine microsatellite markers derived from the transcriptome. Results and discussion: This study unveiled a notable degree of genetic diversity in E. nutans populations at nuclear (I = 0.46, He = 0.32) and plastid DNA levels (Hd = 0.805, π = 0.67). Analysis via AMOVA highlighted genetic variation predominantly within populations. Despite limited isolation by distance (IBD), the Mekong-Salween Divide (MSD) emerged as a significant factor influencing genetic differentiation and conserving diversity. Furthermore, correlations were established between external environmental factors and effective alleles of three EST-SSRs (EN5, EN57 and EN80), potentially linked to glutathione S-transferases T1 or hypothetical proteins, affecting adaptation. This study deepens the understanding of the intricate relationship between genetic diversity, adaptation, and environmental factors within E. nutans populations on the QTP. The findings shed light on the species' evolutionary responses to diverse ecological conditions and contribute to a broader comprehension of plant adaptation mechanisms.

5.
Plants (Basel) ; 12(18)2023 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-37765492

RESUMEN

Past climatic and topographic variations have created strong biogeographic barriers for alpine species and are key drivers of the distribution of genetic variation and population dynamics of species on the Qinghai-Tibet Plateau (QTP). Therefore, to better conserve and use germplasm resources, it is crucial to understand the distribution and differentiation of genetic variation within species. Elymus breviaristatus, an ecologically important rare grass species with strong resistance, is restricted to a limited area of the QTP. In this study, we investigated the phylogeography of E. breviaristatus using five chloroplast genes and spacer regions in natural populations distributed along the eastern QTP. We identified a total of 25 haplotypes among 216 individuals from 18 E. breviaristatus populations, which were further classified into four haplogroups based on geographical distribution and haplotype network analysis. Notably, we did not observe any signs of population expansion. High genetic diversity was exhibited at both species and population levels, with precipitation being the main limiting factor for population genetic diversity levels. Higher genetic diversity was exhibited by populations located near the Mekong-Salween Divide genetic barrier, suggesting that they may have served as a glacial refuge. The significant pattern of genetic differentiation by environmental isolation highlights the influence of heterogeneous environments on the genetic structure of E. breviaristatus populations. Additionally, the results of ecological niche models indicated that the geographic distribution of E. breviaristatus populations has decreased rapidly since the Last Glacial Maximum but is not threatened by future global warming.

6.
Sensors (Basel) ; 23(17)2023 Aug 25.
Artículo en Inglés | MEDLINE | ID: mdl-37687881

RESUMEN

Spectrum sensing in Cognitive radio (CR) is a way to improve spectrum utilization by detecting spectral holes to achieve a dynamic allocation of spectrum resources. As it is often difficult to obtain accurate wireless environment information in real-world scenarios, the detection performance is limited. Signal-to-noise ratio (SNR), noise variance, and channel prior occupancy rate are critical parameters in wireless spectrum sensing. However, obtaining these parameter values in advance is challenging in practical scenarios. A lifting wavelet-assisted Expectation-Maximization (EM) joint estimation and detection method is proposed to estimate multiple parameters and achieve full-blind detection, which uses lifting wavelet in noise variance estimation to improve detection probability and convergence speed. Moreover, a stream learning strategy is used in estimating SNR and channel prior occupancy rate to fit the scenario where the SU has mobility. The simulation results demonstrate that the proposed method can achieve comparable detection performance to the semi-blind EM method.

7.
Analyst ; 148(20): 5152-5156, 2023 Oct 05.
Artículo en Inglés | MEDLINE | ID: mdl-37721048

RESUMEN

A fluorescent sensor array has been developed based on conjugated polymers (CPs) having six different skeletons for the detection of tetracyclines (TCs), which are known as environmental pollutants. CPs were synthesized from confined nanoreactors in a controlled manner. The fluorescent response occurs through the fluorescence resonance energy transfer (FRET) effect. By utilizing linear discriminant analysis (LDA), effective differentiation of TCs was accomplished with a very low detection concentration (66 nM). Moreover, the sensor array exhibited a highly sensitive ability to quantitatively distinguish different concentrations of TCs. Finally, the sensor array's potential for detecting TCs in aqueous solutions has been successfully demonstrated, widening its applications in practical environments. With simple preparation process, a low cost of detection and high sensitivity, the experimental results indicate that the CP-based sensor array is a promising platform for the sensitive and quantitative detection of TCs, and provides a good reference for future scientific research.

8.
Sensors (Basel) ; 23(15)2023 Jul 25.
Artículo en Inglés | MEDLINE | ID: mdl-37571452

RESUMEN

Channel estimation of an orthogonal frequency division multiplexing (OFDM) system based on compressed sensing can effectively reduce the pilot overhead and improve the utilization rate of spectrum resources. The traditional SAMP algorithm with a fixed step size for sparse channel estimation has the disadvantages of a low estimation efficiency and limited estimation accuracy. An Improved SAMP (ImpSAMP) algorithm is proposed to estimate the channel state information of the OFDM system. In the proposed ImpSAMP algorithm, the received signal is firstly denoised based on the energy-detection method, which can reduce the interferences on channel estimation. Furthermore, the step size is adjusted dynamically according to the l2 norm of difference between two estimated sparse channel coefficients of adjacent phases to estimate the sparse channel coefficients quickly and accurately. In addition, the double threshold judgment is adopted to enhance the estimation efficiency. The simulation results show that the ImpSAMP algorithm outperforms the traditional SAMP algorithm in estimation efficiency and accuracy.

9.
Sci Total Environ ; 897: 165336, 2023 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-37414176

RESUMEN

To better utilize poorly fermented oat silage on the Qinghai Tibetan Plateau, 239 samples of this biomass were collected from the plateau temperate zone (PTZ), plateau subboreal zone (PSBZ), and nonplateau climatic zone (NPCZ) in the region and analyzed for microbial community, chemical composition and in vitro gas production. Climatic factors affect the bacterial α-diversity and ß-diversity of poorly fermented oat silage, which led to the NPCZ having the highest relative abundance of Lactiplantibacillus plantarum. Furthermore, the gas production analysis showed that the NPCZ had the highest maximum cumulative gas emissions of methane. Through structural equation modeling analysis, environmental factors (solar radiation) affected methane emissions via the regulation of lactate production by L. plantarum. The enrichment of L. plantarum contributes to lactic acid production and thereby enhances methane emission from poorly fermented oat silage. Notably, there are many lactic acid bacteria detrimental to methane production in the PTZ. This knowledge will be helpful in revealing the mechanisms of environmental factors and microbial relationships influencing the metabolic processes of methane production, thereby providing a reference for the clean utilization of other poorly fermented silage.


Asunto(s)
Avena , Biocombustibles , Biocombustibles/análisis , Ensilaje/análisis , Tibet , Bacterias/metabolismo , Metano/análisis
10.
Sensors (Basel) ; 23(10)2023 May 21.
Artículo en Inglés | MEDLINE | ID: mdl-37430859

RESUMEN

Intelligent telemedicine technology has been widely applied due to the quick development of the Internet of Things (IoT). The edge-computing scheme can be regarded as a feasible solution to reduce energy consumption and enhance the computing capabilities for the Wireless Body Area Network (WBAN). For an edge-computing-assisted intelligent telemedicine system, a two-layer network architecture composed of WBAN and Edge-Computing Network (ECN) was considered in this paper. Moreover, the age of information (AoI) was adopted to describe the time cost for the TDMA transmission mechanism in WBAN. According to the theoretical analysis, the strategy for resource allocation and data offloading in edge-computing-assisted intelligent telemedicine systems can be expressed as a system utility function optimizing problem. To maximize the system utility, an incentive mechanism based on contract theory (CT) was considered to motivate edge servers (ESs) to participate in system cooperation. To minimize the system cost, a cooperative game was developed to address the slot allocation in WBAN, while a bilateral matching game was utilized to optimize the data offloading problem in ECN. Simulation results have verified the effectiveness of the strategy proposed in terms of the system utility.

11.
Rev. psicol. deport ; 32(2): 39-49, Jun 20, 2023. tab
Artículo en Inglés | IBECS | ID: ibc-222931

RESUMEN

Competitive athletes face various factors that affect the athletic as well as the academic of the students. Therefore, this statement describes that how athletes cover their mental stress along aggressive struggle of college life. Sports base students have to deal with their academic performance, financial challenges, and progress efficiency of the sports students. The participation of students in sports is important, as it extends the physical activity expands of our society financially, academically, politically, and psychologically. When it comes to the image of an organization or educational institution, the student-athletes is as a highly visible subgroup of students whose performance and visibility is significantly important for the institution. The social environment, including classrooms, can be seen as a system of stress consisting forces that remain relatively stable over time. The data was collected from 242 athletic students. In this paper, the Perceived Level of Learning Anxiety, Perceived Usefulness of Student’s Learning, and Self-Engagement in Learning Course are the Independent Variables. Whereas, Positive Sports Psychology is a Dependent Variable. The research model had three hypothesis statements. The data was collected through online questionnaire portals. Furthermore, the data was analyzed on SMART PLS 3. The results and findings of the data indicated a positive and significant association between the variables.(AU)


Asunto(s)
Humanos , Masculino , Femenino , Deportes , Psicología del Deporte , Atletas , Estudiantes , Rendimiento Atlético , Rendimiento Académico
12.
Front Pharmacol ; 14: 1144955, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37324462

RESUMEN

Yiwei decoction (YWD) is a formula of traditional Chinese medicine (TCM) that is clinically effective for the prevention and treatment of gastric cancer recurrence and metastasis. According to the theory of TCM, YWD tonifies the body and strengthens the body's resistance to gastric cancer recurrence and metastasis potentially via the immune regulation of the spleen. The aims of the present study were to investigate whether YWD-treated spleen-derived exosomes in rats inhibit the proliferation of tumor cells, to elucidate the anticancer effects of YWD, and to provide evidence supporting the use of YWD as a new clinical treatment for gastric cancer. Spleen-derived exosomes were obtained by ultracentrifugation and identified by transmission electron microscopy, nanoparticle tracking analysis, and western blot analysis. The location of the exosomes in tumor cells was then determined by immunofluorescence staining. After tumor cells were treated with different concentrations of exosomes, the effect of exosomes on cell proliferation was determined by cell counting kit 8 (CCK8) and colony formation assays. Tumor cell apoptosis was detected by flow cytometry. Particle analysis and western blot analysis identified the material extracted from spleen tissue supernatant as exosomes. Immunofluorescence staining showed that spleen-derived exosomes were taken up by HGC-27 cells, and the CCK8 assay confirmed that the relative tumor inhibition rate of YWD-treated spleen-derived exosomes in the 30 µg/mL reached 70.78% compared to control exosomes in the 30 µg/mL (p < 0.05). Compared to control exosomes in the 30 µg/mL, the colony formation assay indicated that YWD-treated spleen-derived exosomes in the 30 µg/mL colonies have decreased by 99.03% (p < 0.01). Moreover, flow cytometry analysis showed that treatment with YWD-treated exosomes in the 30 µg/mL increased the apoptosis rate to 43.27%, which was significantly higher than that of the control group in the 30 µg/mL (25.91%) (p < 0.05). In conclusion, spleen-derived exosomes from YWD-treated animals inhibit the proliferation of HGC-27 cells via inducing apoptosis, suggesting that spleen-derived exosomes are involved in mediating the antitumor effect of YWD. These results demonstrated a novel exosome-mediated anticancer effect of YWD as a TCM formula, thereby supporting the use of YWD-treated exosomes as a new approach for the clinical treatment of gastric cancer.

13.
Small ; 19(42): e2302631, 2023 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-37329207

RESUMEN

The requirements for high energy and green primary explosives are more and more stringent because of the rising demand in the application of micro initiation explosive devices. Four new energetic compounds with powerful initiation ability are reported and their performances are experimentally proven as designed, including non-perovskites ([H2 DABCO](H4 IO6 )2 ·2H2 O, named TDPI-0) and perovskitoid energetic materials (PEMs) ([H2 DABCO][M(IO4 )3 ]; DABCO=1,4-Diazabicyclo[2.2.2]octane, M=Na+ , K+ , and NH4 + for TDPI-1, -2, and -4, respectively). The tolerance factor is first introduced to guide the design of perovskitoid energetic materials (PEMs). In conjunction with [H2 DABCO](ClO4 )2 ·H2 O (DAP-0) and [H2 DABCO][M(ClO4 )3 ] (M=Na+ , K+ , and NH4 + for DAP-1, -2, and -4), the physiochemical properties of the two series are investigated between PEMs and non-perovskites (TDPI-0 and DAP-0). The experimental results show that PEMs have great advantages in improving the thermal stability, detonation performance, initiation capability, and regulating sensitivity. The influence of X-site replacement is illustrated by hard-soft-acid-base (HSAB) theory. Especially, TDPIs possess much stronger initiation capability than DAPs, which indicates that periodate salts are in favor of deflagration-to-detonation transition. Therefore, PEMs provide a simple and feasible method for designing advanced high energy materials with adjustable properties.

14.
Sensors (Basel) ; 23(11)2023 May 23.
Artículo en Inglés | MEDLINE | ID: mdl-37299740

RESUMEN

Pilot contamination due to pilot reuse seriously mitigates the performance of the cell-free massive multiple-input multiple-output (MIMO) systems. In this paper, we propose a joint pilot assignment scheme that employs user clustering and graph coloring (UC-GC) to reduce pilot contamination. The proposed method consists of two steps: firstly, we utilize AP selection to classify all users; secondly, we assign pilots to users with more severe pilot contamination using the graph coloring algorithm and then assign pilots to the remaining users. The numerical simulation results show that the proposed scheme outperforms existing pilot assignment schemes and significantly improves throughout with low complexity.


Asunto(s)
Algoritmos , Contaminación de Medicamentos , Análisis por Conglomerados , Simulación por Computador
15.
Int J Biol Macromol ; 242(Pt 3): 125070, 2023 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-37244338

RESUMEN

H. virescens is a perennial herbaceous plant with highly tolerant to cold weather, but the key genes that respond to low temperature stress still remain unclear. Hence, RNA-seq was performed using leaves of H. virescens treated at 0 °C and 25 °C for 12 h, 36 h, and 60 h, respectively, and a total of 9416 DEGs were significantly enriched into seven KEGG pathways. The LC-QTRAP platform was performed using leaves of H. virescens leaves at 0 °C and 25 °C for 12 h, 36 h, and 60 h, respectively, and a total of 1075 metabolites were detected, which were divided into 10 categories. Additionally, 18 major metabolites, two key pathways, and six key genes were mined using a multi-omics analytical strategy. The RT-PCR results showed that with the extension of treatment time, the expression levels of key genes in the treatment group gradually increased, and the difference between the treatment group and the control group was extremely significant. Notably, the functional verification results showed that the key genes positively regulated cold tolerance of H. virescens. These results can lay a foundation for the in-depth analysis of the mechanism of response of perennial herbs to low temperature stress.


Asunto(s)
Perfilación de la Expresión Génica , Transcriptoma , Temperatura , Poaceae , Metabolómica , Frío , Regulación de la Expresión Génica de las Plantas
16.
Int Immunopharmacol ; 119: 110151, 2023 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-37044040

RESUMEN

OBJECTIVES: Waning vaccine-induced immunity and emergence of new severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) variants which may lead to immune escape, pose a major threat to the COVID-19 pandemic. Currently, enhanced efficacy of the neutralization antibodies (NAb) produced after the booster dose of vaccinations against the Omicron variant is the main focus of vaccine strategy research. In this study we have analyzed the potency of the NAbs and IgGs produced after the third vaccine dose in patients infected with Omicron variant and wild-type (WT) SARS-CoV-2. METHODS: We enrolled 75 patients with Omicron variant breakthrough infections, and 87 patients with WT infections. We recorded the clinical characteristics and vaccination information of all patients and measured the NAb and anti-S1 (spike protein) + N (nucleocapsid protein) IgG-binding antibodies against SARS-CoV-2 in serum samples of Omicron variant-infected patients at admission, and patients with WT COVID-19 infection from the time of admission and discharge, and one-year to two-years follow-ups. RESULTS: Our results demonstrated higher NAb levels, fewer clinical symptoms, and faster viral shedding in Omicron variant infected patients vaccinated with the booster dose. Hybrid immunity (natural infection plus vaccination) induces higher NAb levels than vaccine-only immunity. NAb and IgG levels decreased significantly at one-year follow-up in WT convalescents with natural infection. The NAb and IgG levels in booster-vaccinated COVID-19 patients were higher than those in two-dose-vaccinated patients. CONCLUSION: Our results suggest that booster vaccinations are required to improve the level of protective NAbs. Moreover, our data provide important evidence for vaccination strategies based on existing vaccines.


Asunto(s)
Anticuerpos Neutralizantes , COVID-19 , Humanos , SARS-CoV-2 , Pandemias , Inmunoglobulina G , Anticuerpos Antivirales , Vacunación
17.
Sensors (Basel) ; 23(4)2023 Feb 17.
Artículo en Inglés | MEDLINE | ID: mdl-36850875

RESUMEN

Mobile crowdsensing (MCS) has been an emerging sensing paradigm in recent years, which uses a sensing platform for real-time processing to support various services for the Internet of Things (IoT) and promote the development of IoT. As an important component of MCS, how to design task assignment algorithms to cope with the coexistence of multiple concurrent heterogeneous tasks in group-oriented social relationships while satisfying the impact of users' preferences on heterogeneous multitask assignment and solving the preference matching problem under heterogeneous tasks, is one of the most pressing issues. In this paper, a new algorithm, group-oriented adjustable bidding task assignment (GO-ABTA), is considered to solve the group-oriented bilateral preference-matching problem. First, the initial leaders and their collaborative groups in the social network are selected by group-oriented collaboration, and then the preference assignment of task requesters and users is modeled as a stable preference-matching problem. Then, a tunable bidding task assignment process is completed based on preference matching under budget constraints. Finally, the individual reasonableness, stability, and convergence of the proposed algorithm are demonstrated. The effectiveness of the proposed algorithm and its superiority to other algorithms are verified by simulation results.

18.
Genes (Basel) ; 14(2)2023 01 23.
Artículo en Inglés | MEDLINE | ID: mdl-36833229

RESUMEN

BACKGROUND: Elymus L. is the largest genus in the Triticeae tribe. Most species in this genus are highly stress resistant, with excellent forage value. Elymus breviaristatus, a rare species endemic to the Qinghai-Tibet Plateau (QTP), is declining due to habitat fragmentation. However, genetic data for E. breviaristatus are limited, with expressed sequence tag (EST) markers being particularly rare, hampering genetic studies and protection measures. RESULTS: We obtained 9.06 Gb clean sequences from the transcriptome of E. breviaristatus, generating 171,522 unigenes, which were assembled and functionally annotated against five public databases. We identified 30,668 SSRs in the E. breviaristatus transcriptome, from which 103 EST-SSR primer pairs were randomly selected. Of these, 58 pairs of amplified products of the expected size, and 18 of the amplified products were polymorphic. Model-based Bayesian clustering, the unweighted pair group method with arithmetic average (UPGMA), and principal coordinate analysis (PCoA) of 179 wild E. breviaristatus in 12 populations using these EST-SSRs were generally consistent, grouping the 12 populations into two major clades. Analysis of molecular variance (AMOVA) found 70% of the genetic variation among the 12 populations and 30% within the populations, indicating a high level of genetic differentiation (or low gene exchange) among the 12 populations. The transferability of the 58 successful EST-SSR primers to 22 related hexaploid species was 86.2-98.3%. UPGMA analysis generally grouped species with similar genome types together. CONCLUSIONS: Here, we developed EST-SSR markers from the transcriptome of E. breviaristatus. The transferability of these markers was evaluated, and the genetic structure and diversity of E. breviaristatus were explored. Our results provide a basis for the conservation and management of this endangered species, and the obtained molecular markers represent valuable resources for the exploration of genetic relationships among species in the Elymus genus.


Asunto(s)
Elymus , Etiquetas de Secuencia Expresada , Elymus/genética , Transcriptoma , Teorema de Bayes , Marcadores Genéticos
19.
Mol Cell Proteomics ; 22(2): 100493, 2023 02.
Artículo en Inglés | MEDLINE | ID: mdl-36621767

RESUMEN

Serum antibodies IgM and IgG are elevated during Coronavirus Disease 2019 (COVID-19) to defend against viral attacks. Atypical results such as negative and abnormally high antibody expression were frequently observed whereas the underlying molecular mechanisms are elusive. In our cohort of 144 COVID-19 patients, 3.5% were both IgM and IgG negative, whereas 29.2% remained only IgM negative. The remaining patients exhibited positive IgM and IgG expression, with 9.3% of them exhibiting over 20-fold higher titers of IgM than the others at their plateau. IgG titers in all of them were significantly boosted after vaccination in the second year. To investigate the underlying molecular mechanisms, we classed the patients into four groups with diverse serological patterns and analyzed their 2-year clinical indicators. Additionally, we collected 111 serum samples for TMTpro-based longitudinal proteomic profiling and characterized 1494 proteins in total. We found that the continuously negative IgM and IgG expression during COVID-19 were associated with mild inflammatory reactions and high T cell responses. Low levels of serum IgD, inferior complement 1 activation of complement cascades, and insufficient cellular immune responses might collectively lead to compensatory serological responses, causing overexpression of IgM. Serum CD163 was positively correlated with antibody titers during seroconversion. This study suggests that patients with negative serology still developed cellular immunity for viral defense and that high titers of IgM might not be favorable to COVID-19 recovery.


Asunto(s)
COVID-19 , Humanos , Proteómica , Anticuerpos Antivirales , Inmunoglobulina M , Inmunoglobulina G
20.
PLoS One ; 17(12): e0279093, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36520810

RESUMEN

Guidelines and recommendations from public health authorities related to face masks have been essential for containing the COVID-19 pandemic. A cross-sectional survey was conducted in Ningbo City, China, from April 8 to 12, 2022. We assessed the behavioral differences and correlates of mask usage, primarily mask-removal. We examined public mask-wearing behavior during on-site COVID-19 nucleic acid detection. The survey instrument was developed based on the guidelines issued by the World Health Organization and consisted of demographics, mask-wearing knowledge, and behavior. We analyzed data from 1180 participants; 73.2% demonstrated good mask-wearing knowledge. However, regarding mask-wearing behavior, only 53.7% knew the correct way to remove a mask; 70.3% maintained hand hygiene after touching the outside. Binary logistic regression analyses revealed that health prevention knowledge and free mask distribution were positively associated with two types of mask-wearing behaviors. Most participants used masks during the COVID-19 pandemic; however, mask-removal and hand hygiene were neglected when touching the outside of the mask. More attention must be paid to mask-removal and hand hygiene details. Local health authorities should consider introducing the free distribution of masks.


Asunto(s)
COVID-19 , Humanos , COVID-19/epidemiología , COVID-19/prevención & control , Pandemias/prevención & control , SARS-CoV-2 , Máscaras , Estudios Transversales , China/epidemiología
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