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1.
Cardiovasc Diagn Ther ; 14(2): 251-263, 2024 Apr 30.
Article En | MEDLINE | ID: mdl-38716313

Background: The presence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in myocardial autopsy tissues has been observed in certain individuals with coronavirus disease 2019 (COVID-19). However, the duration of cardiac involvement remains uncertain among recovered COVID-19 patients. Our study aims to evaluate the long-term persistence of SARS-CoV-2 within cardiac tissue. Methods: We prospectively and consecutively evaluated the patients undergoing mitral valve replacement (MVR) and left atrial (LA) volume reduction surgery from May 25 to June 10, 2023 at our center, who had been approximately 6 months of recovery after Omicron wave. Patients tested positive for SARS-CoV-2 upon admission were excluded. The surgical LA tissue was collected in RNA preservation solution and stored at -80 ℃ immediately. Then SARS-CoV-2, interleukin-6 (IL-6) and interleukin-1ß (IL-1ß) RNA expression in LA tissues were assessed through thrice-repeated reverse transcription-quantitative polymerase chain reaction (RT-qPCR) analyses. Categorical variables were assessed using the Chi-square or Fisher's exact tests, and continuous variables was analyzed using the Mann-Whitney U test. Results: Nine of 41 patients were enrolled, all of whom tested negative for SARS-CoV-2 upon admission (two antigen and PCR tests). In four of nine patients, SARS-CoV-2 RNA was detected in their LA tissue, indicating viral colonization. Among the four positive cases, the IL-6 and IL-1ß relative expression levels in the LA tissue of one patient were increased approximately 55- and 110-fold, respectively, compared to those of SARS-CoV-2 (-) patients. Increased expression of IL-6 and IL-1ß were observed in the myocardium of this patient. Another patient demonstrated a remarkable 7-fold increase in both IL-6 and IL-1ß expression, surpassing that of SARS-CoV-2 (-) patients. Additionally, no other cardiac inflammation-related diseases or conditions were presented in these two patients. The IL-6 and IL-1ß expression levels of the remaining two patients were not significantly different from those of SARS-CoV-2 (-) patients. The relative expression levels of IL-6 and IL-1ß in cardiac tissues of all SARS-CoV-2 (-) patients were relatively low. Interestingly, despite abnormally elevated levels of IL-6 and IL-1ß within their cardiac tissue, two patients did not show a significant increase in serum IL-6 and IL-1ß levels when compared to other patients. Conclusions: Our research suggests that certain COVID-19-recovered patients have persistent colonization of SARS-CoV-2 in their cardiac tissue, accompanied by a local increase in inflammatory factors.

2.
BMC Microbiol ; 24(1): 170, 2024 May 17.
Article En | MEDLINE | ID: mdl-38760711

BACKGROUND: Intra-oral halitosis (IOH) is bad breath produced locally by the mouth in addition to systemic diseases and is one of the main causes of interpersonal communication and psychological disorders in modern society. However, current treatment modalities still only alleviate IOH and do not eradicate it. Therefore, based on the differential performance of oral microecology in IOH patients, we propose a microbiota transplantation treatment aimed at restoring oral microecological balance and analyze its feasibility by oral flora colonization test in Wistar rats. OBJECTIVE: Saliva flora samples were collected from IOH patients and healthy subjects to analyze the feasibility of oral microbiota transplantation (OMT) for the treatment of IOH by the Wistar rat oral flora colonization test. METHODS: Seven patients with IOH who visited the First Affiliated Hospital of Xinjiang Medical University from June 2017 to June 2022 with the main complaint of halitosis and three healthy subjects were randomly selected. A Halimeter portable breath detector was used to record breath values and collect saliva flora samples. Sixteen SPF-grade male Wistar rats were housed in the Animal Experiment Center of Xinjiang Medical University and randomly divided into an experimental group (Group E) and a control group (Group C) for the oral flora colonization test. Species composition and associated metabolic analysis of oral flora during the Wistar rat test using 16SrRNA sequencing technology and PICRUSt metabolic analysis. Also, the changes in the breath values of the rats were recorded during the test. RESULTS: The proportion of Porphyromonas, Fusobacterium, Leptotrichia, and Peptostreptococcus was significantly higher in group E compared to group C after colonization of salivary flora of IOH patients (all P < 0.05), and the abundance with Gemella was zero before colonization, while no colonization was seen in group C after colonization compared to baseline. PICRUSt metabolic analysis also showed significantly enhanced IOH-related metabolic pathways after colonization in group E (all P < 0.05), as well as significantly higher breath values compared to baseline and group C (all P < 0.0001). After colonization by salivary flora from healthy subjects, group E rats showed a decrease in the abundance of associated odor-causing bacteria colonization, a reduction in associated metabolism, and a significant decrease in breath values. In contrast, group C also showed differential changes in flora structure and breath values compared to baseline after salivary flora colonization of IOH patients. CONCLUSIONS: OMT for IOH is a promising green treatment option, but the influence of environmental factors and individual differences still cannot be ignored.


Feasibility Studies , Halitosis , Microbiota , Mouth , Rats, Wistar , Saliva , Animals , Halitosis/microbiology , Halitosis/therapy , Male , Rats , Humans , Saliva/microbiology , Mouth/microbiology , Bacteria/classification , Bacteria/isolation & purification , Bacteria/genetics , Adult , Female , RNA, Ribosomal, 16S/genetics , Middle Aged
3.
Heliyon ; 10(7): e29106, 2024 Apr 15.
Article En | MEDLINE | ID: mdl-38601613

Background: Aortic surgery successfully improves the prognosis of patients with type A aortic dissection. However, total arch replacement and reconstruction remain challenging. This study presents a new surgical modality, the in-situ stent-graft fenestration (ISSF) technique, for simplifying aortic arch reconstruction and assesses its short-term efficacy and safety in patients with type A aortic dissection. Methods: Data from 177 patients with type A aortic dissection who underwent aortic arch reconstruction were retrospectively analyzed. Sun's procedure was performed in 90 patients and ISSF was performed in the other 87. Results: The in-hospital mortality rate was 7.8% in the Sun's procedure group and 3.4% in the ISSF group (p = 0.357). Compared to the Sun's procedure group, the ISSF group had significantly shorter surgical duration, cardiopulmonary bypass time, circulatory arrest time, mechanical ventilation time, and aortic cross-clamp time (p < 0.05). Additionally, intraoperative blood loss was lower in the ISSF group than in the Sun's procedure group (p < 0.05). Patients who underwent ISSF also had a lower incidence of postoperative complications, including lung injury, renal failure, peripheral nerve injury, and chylothorax, than those who underwent Sun's procedure (p < 0.05). During the 6-month follow-up period after surgery, both groups showed significant improvements in the true lumen diameter of the descending thoracic aorta post-operation compared with the pre-operation measurements; meanwhile, the false lumen diameter decreased (p < 0.05). Conclusions: The ISSF technique appears to be an effective and safe alternative to conventional surgical procedures for patients with type A aortic dissection, with the potential to simplify the procedure, shorten the operation time, and yield satisfactory operative results. However, further investigation is needed to determine its long-term benefits.

4.
Curr Res Food Sci ; 8: 100733, 2024.
Article En | MEDLINE | ID: mdl-38655189

Background: Fruit freshness detection by computer vision is essential for many agricultural applications, e.g., automatic harvesting and supply chain monitoring. This paper proposes to use the multi-task learning (MTL) paradigm to build a deep convolutional neural work for fruit freshness detection. Results: We design an MTL model that optimizes the freshness detection (T1) and fruit type classification (T2) tasks in parallel. The model uses a shared CNN (convolutional neural network) subnet and two FC (fully connected) task heads. The shared CNN acts as a feature extraction module and feeds the two task heads with common semantic features. Based on an open fruit image dataset, we conducted a comparative study of MTL and single-task learning (STL) paradigms. The STL models use the same CNN subnet with only one specific task head. In the MTL scenario, the T1 and T2 mean accuracies on the test set are 93.24% and 88.66%, respectively. Meanwhile, for STL, the two accuracies are 92.50% and 87.22%. Statistical tests report significant differences between MTL and STL on T1 and T2 test accuracies. We further investigated the extracted feature vectors (semantic embeddings) from the two STL models. The vectors have an averaged 0.7 cosine similarity on the entire dataset, with most values lying in the 0.6-0.8 range. This indicates a between-task correlation and justifies the effectiveness of the proposed MTL approach. Conclusion: This study proves that MTL exploits the mutual correlation between two or more relevant tasks and can maximally share their underlying feature extraction process. we envision this approach to be extended to other domains that involve multiple interconnected tasks.

5.
J Cardiothorac Surg ; 19(1): 116, 2024 Mar 12.
Article En | MEDLINE | ID: mdl-38475763

OBJECTIVE: The aim of the present systematic review was to determine whether prophylactic use of cerebrospinal fluid drainage (CSFD) contributes to a lower rate of spinal cord ischemia (SCI) after thoracic endovascular aortic repair (TEVAR) for type B aortic dissection (TBAD). METHODS: PubMed, Embase, Web of Science and Cochrane Library databases were systematically searched to identify all relevant studies reported before May 7, 2023. A systematic review was conducted in accordance with PRISMA guidelines (PROSPERO registration no. CRD42023441392). The primary outcome was permanent SCI. Secondary outcomes were temporary SCI and 30-day/in-hospital mortality. The data were presented as the pooled event rates (ERs) and 95% confidence intervals (CIs). RESULTS: A total of 1008 studies were screened, of which 34 studies with 2749 patients were included in the present analysis. The mean Downs and Black quality assessment score was 8.71 (range, 5-12). The pooled rate of permanent SCI with prophylactic CSFD was identical to that without prophylactic CSFD (2.0%; 95% CI, 1.0-3.0; P = 0.445). No statistically significant difference was found between the rates of permanent SCI with routine vs. selective prophylactic CSFD (P = 0.596). The pooled rate of temporary SCI was 1.0% (95% CI, 0.00-1.0%). The pooled rate for 30-day or in-hospital mortality was not significantly different (P = 0.525) in patients with prophylactic CSFD (4.0, 95% CI 2.0-6.0) or without prophylactic CSFD (5.0, 95% CI 2.0-7.0). CONCLUSIONS: The systematic review has shown that prophylactic CSFD was not associated with a lower rate of permanent SCI and 30-day or in-hospital mortality after TEVAR for TBAD.


Aortic Aneurysm, Thoracic , Aortic Dissection , Blood Vessel Prosthesis Implantation , Endovascular Procedures , Spinal Cord Ischemia , Humans , Aortic Aneurysm, Thoracic/surgery , Cerebrospinal Fluid Leak , Drainage , Risk Factors , Treatment Outcome , Retrospective Studies
6.
Int J Cardiol Heart Vasc ; 50: 101348, 2024 Feb.
Article En | MEDLINE | ID: mdl-38322019

Objective: The clinical impact of baseline mitral regurgitation (MR) on the outcomes after transcatheter aortic valve replacement (TAVR) is not clear. This study sought to assess the clinical impact of baseline MR on outcomes after TAVR. Methods: The study was a retrospective analysis. Data was from 120 consecutive patients with severe aortic stenosis (AS) undergoing TAVR at our center from June 2018 and July 2020. Clinical outcomes were assessed at 30-day, 1- and 2-year follow-up. Results: The median follow-up was 736.0 (interquartile range, 666.0-965.0) days. Overall survival in patients with nonsignificant and significant baseline MR was not significantly different, while patients from the improved MR group after TAVR demonstrated a significantly higher survival than unchanged or worsened MR group during 2-year follow-up. NYHA functional class had generally improved at 1 year, with only 8.3 % of patients with nonsignificant MR and 17.5 % of patients with significant MR in class III or IV. Patients with improved MR at 1 year after TAVR had a significantly higher LVEF, smaller LVEDD and LVESD than those with unchanged or worsened MR. Among the significant baseline MR group, 70.4 % and 80.0 % of patients had improved to nonsignificant MR at 30-day and 1-year follow-up after TAVR, respectively. Conclusions: Significant baseline MR was not associated with the increased risk of all-cause mortality 2 years after TAVR. Significant baseline MR was improved in most patients at 1 year after TAVR. Patients with unchanged or worsened MR had an increased all-cause mortality.

7.
Int J Cardiol Heart Vasc ; 49: 101313, 2023 Dec.
Article En | MEDLINE | ID: mdl-38107428

Objectives: The aim of the present study was to assess the differences between BAV and TAV patients with chronic moderate to severe or severe AS regarding presentation, incidence of TAVR, survival, ascending aorta diameter and dilatation rate before and after TAVR. Methods: The study included 667 consecutive patients with chronic moderate to severe or severe AS from January 2012 and December 2022. Outcomes included all-cause mortality, incidence of TAVR, and ascending aorta diameter and dilatation rate. Results: There were 185 BAV-AS and 482 TAV-AS patients, and BAV-AS patients were younger (67 vs 78 years, P = 0.027). Total follow-up was 4.5 years (IQR: 2.7-8.9 years), 290 patients underwent TAVR, and 165 patients died. The 8-year TAVR incidence was higher in BAV-AS (55% ± 4%) vs TAV-AS (41% ± 5%; P = 0.02). The 8-year survival was higher in BAV-AS (85% ± 6%) vs TAV-AS (71% ± 6%; P < 0.0001) and became insignificant after age adjustment (P = 0.33). The dilatation rate of ascending aorta was significantly faster in BAV-AS patients compared with TAV-AS patients before TAVR. However, the ascending aorta dilatation rate for BAV-AS and TAV-AS patients was not significantly different after TAVR. Conclusions: Compared with TAV-AS, BAV-AS patients were younger and underwent TAVR more frequently, resulting in a considerable survival advantage. After TAVR, ascending aorta dilatation rates were similar in BAV-AS and TAV-AS patients, suggesting an important role of hemodynamics on ascending aorta dilatation in BAV-AS.

8.
J Cardiothorac Surg ; 18(1): 323, 2023 Nov 14.
Article En | MEDLINE | ID: mdl-37964308

OBJECTIVE: We designed a simplified total arch reconstruction (s-TAR) technique which could be performed under mild hypothermia (30-32 °C) with distal aortic perfusion. This study aimed to compare its efficacy of organ protection with the conventional total arch reconstruction (c-TAR). METHODS: We reviewed the clinical data of 195 patients who had ascending aortic aneurysm with extended aortic arch dilation and underwent simultaneous ascending aorta replacement and TAR procedure between January 2018 and December 2022 in our center. 105 received c-TAR under moderate hypothermia (25-28 °C) with circulatory arrest (c-TAR group); rest 90 received s-TAR under mild hypothermia (30-32 °C) with distal aortic perfusion (s-TAR group). RESULTS: The s-TAR group demonstrated shorter CPB time, cross-clamp time and lower body circulatory arrest time compared with the c-TAR group. The 30-day mortality was 2.9% for the c-TAR group and 1.1% for the s-TAR group (P = 0.043). The mean duration of mechanical ventilation was shorter in the s-TAR group. Paraplegia was observed in 4 of 105 patients (3.8%) in the c-TAR group, while no such events were observed in the s-TAR group. The incidence of temporary neurologic dysfunction was significantly higher in the c-TAR group. The incidence of permanent neurologic dysfunction also showed a tendency to be higher in the c-TAR group, without statistical significance. Furthermore, the incidence of reoperation for bleeding were significantly lower in the s-TAR group. The rate of postoperative hepatic dysfunction and all grades of AKI was remarkably lower in the s-TAR group. The 3-year survival rate was 95.6% in the s-TAR group and 91.4% in the c-TAR group. CONCLUSIONS: s-TAR under mild hypothermia (30-32℃) with distal aortic perfusion is associated with lower mortality and morbidity, offering better neurological and visceral organ protection compared with c-TAR.


Aortic Diseases , Hypothermia, Induced , Hypothermia , Nervous System Diseases , Humans , Treatment Outcome , Aorta, Thoracic/surgery , Hypothermia, Induced/methods , Perfusion/methods , Aortic Diseases/surgery , Cerebrovascular Circulation , Circulatory Arrest, Deep Hypothermia Induced , Retrospective Studies
9.
J Thorac Dis ; 15(9): 4596-4605, 2023 Sep 28.
Article En | MEDLINE | ID: mdl-37868872

Background: One of the crucial aspects of ascending aorta replacement is to achieve hemostasis of the proximal anastomosis. This study aimed to describe a modified prosthesis eversion technique for proximal anastomosis in ascending aorta replacement and compare its operative outcomes with the conventional prosthesis eversion technique. Methods: We conducted a retrospective analysis of all consecutive patients who had ascending aortic aneurysm and underwent ascending aorta replacement with the modified or conventional prosthesis eversion technique between January 2019 and December 2022 in our center. Results: A total of 108 patients were included: 55 in the modified group and 53 in the conventional group. The durations of cardiopulmonary bypass, aortic cross-clamping and total operation in the conventional group were longer than those in the modified group. Furthermore, perioperative blood loss and the incidence of re-exploration for bleeding were significantly lower in the modified group. Accordingly, patients in the conventional group accepted more blood transfusion. The modified group had a shorter duration in intensive care unit (ICU) and hospital, and lower total hospitalization costs than those in the conventional group. Conclusions: The modified prosthesis eversion technique is an effective alternative for proximal anastomosis in ascending aorta replacement, with less blood loss, shorter operation time, and lower rate of postoperative complications compared with the conventional technique.

10.
Catheter Cardiovasc Interv ; 102(4): 743-750, 2023 10.
Article En | MEDLINE | ID: mdl-37493466

BACKGROUND: Conduction disturbances requiring permanent pacemaker implantation (PPI) are common following transcatheter aortic valve replacement (TAVR). There were conflicting data regarding the impact of new PPI on clinical outcomes after TAVR. OBJECTIVES: The study sought to evaluate the impact of new PPI on clinical outcomes in patients undergoing TAVR. METHODS: This study was a retrospective analysis of prospectively collected data. Data were from 210 consecutive patients without prior PPI who underwent TAVR due to severe symptomatic aortic stenosis at our center between June 2018 and July 2020. Clinical, echocardiographic, and pacing data were assessed at 30-day, 1- and 2-year follow-up. RESULTS: New PPI was required in 35 (16.7%) patients within 30 days after TAVR. The median time from TAVR to PPI was 3 days. The most common indication for PPI was high-degree or complete atrioventricular block. The median follow-up was 798.0 (interquartile range, 669.0-1115.0) days. There were no differences in all-cause mortality (adjusted hazard ratio [HR]: 1.18; 95% confidence interval [CI]: 0.85-2.36; p = 0.415) and cardiovascular mortality (adjusted HR: 0.92; 95% CI: 0.57-1.89; p = 0.609) between groups. However, PPI group had a higher risk of heart failure (HF) rehospitalization (adjusted HR: 1.53; 95% CI: 1.26-2.28; p = 0.027). Echocardiography showed no significant improvement of LVEF over time in patients with PPI. At the latest follow-up, 31.3% of patients exhibited low (≤10%) pacing burdens, whereas 28.1% of patients had near constant (>90%) right ventricular pacing. CONCLUSIONS: New PPI within 30 days following TAVR was not associated with an increased risk of all-cause or cardiovascular mortality. However, patients with PPI had a higher risk of HF rehospitalization and lack of LVEF improvement.


Aortic Valve Stenosis , Pacemaker, Artificial , Transcatheter Aortic Valve Replacement , Humans , Transcatheter Aortic Valve Replacement/adverse effects , Prognosis , Retrospective Studies , Aortic Valve Stenosis/diagnostic imaging , Aortic Valve Stenosis/surgery , Cardiac Pacing, Artificial/adverse effects , Treatment Outcome , Risk Factors , Aortic Valve/diagnostic imaging , Aortic Valve/surgery
11.
BMC Cardiovasc Disord ; 23(1): 330, 2023 06 29.
Article En | MEDLINE | ID: mdl-37386379

BACKGROUND: Evidence about safety and efficacy of transcatheter aortic valve replacement (TAVR) with the Venus A-Valve system (Venus Medtech, Hangzhou, China) remains limited for patients with pure native aortic regurgitation (PNAR). OBJECTIVES: The single-center study sought to report the one-year clinical outcomes of the Venus A-Valve in the treatment of PNAR. METHODS: This study was a retrospective analysis of prospectively collected data. Data was from all consecutive patients who had PNAR and underwent TAVR with the Venus A-Valve system at our center from July 2020 and June 2021. Procedural and clinical outcomes up to one year were analyzed using Valve Academic Research Consortium-2 criteria. RESULTS: A total of 45 consecutive patients with PNAR underwent transfemoral TAVR with the Venus A-Valve system. The Mean age was 73.5 ± 5.5 years and 26.7% were female. All the TAVR procedures were performed via transfemoral access. Implantations were successful in 44 cases (97.8%). Only one patient was converted to surgical aortic valve replacement. No patient died intraoperatively. No second valve was implanted. In-hospital mortality rate was 2.3%. The one-year all-cause mortality rate was 4.7% without cardiovascular related death. No patient had moderate or severe paravalvular leakage during follow-up. At one year, the mean pressure gradient was 8.8 ± 0.9 mmHg, and left ventricular ejection fraction increased to 61.5 ± 3.6%. CONCLUSIONS: This single-center study demonstrated the safety and efficacy of transfemoral TAVR with the Venus A-Valve in the treatment of patients with PNAR.


Aortic Valve Insufficiency , Transcatheter Aortic Valve Replacement , Humans , Female , Aged , Male , Aortic Valve Insufficiency/diagnostic imaging , Aortic Valve Insufficiency/etiology , Aortic Valve Insufficiency/surgery , Transcatheter Aortic Valve Replacement/adverse effects , Retrospective Studies , Stroke Volume , Ventricular Function, Left
12.
J Thorac Dis ; 15(4): 1572-1583, 2023 Apr 28.
Article En | MEDLINE | ID: mdl-37197510

Background: Reconstruction of the aortic arch and its three supra-aortic vessels remains a great surgical challenge with postoperative complications. We present a simplified total arch reconstruction with a modified stent graft (s-TAR) and compared its operative outcomes with conventional total arch replacement (c-TAR). Methods: This retrospective analysis of prospectively collected data from all consecutive patients who had ascending aortic aneurysm with extended aortic arch dilation and underwent simultaneous ascending aorta replacement and aortic arch reconstruction with the s-TAR or c-TAR between 2018 and 2021. The indication for intervention was maximum diameter of ascending aorta >55 mm and aortic arch in zone II >35 mm. Results: A total of 84 patients were analyzed: 43 in the s-TAR group and 41 in the c-TAR group. No inter-group differences were found for sex, age, comorbidities, or EuroSCORE II results. All patients were successfully treated with s-TAR or c-TAR, and none died intraoperatively. Cardiopulmonary bypass, selective cerebral perfusion, and lower-body circulatory arrest time were significantly shorter in the s-TAR group, which also had a lower incidence of prolonged ventilation and transient neurologic dysfunction. No patient in either group experienced permanent neurologic dysfunction. The incidence of recurrent laryngeal nerve injury and paraplegia was markedly increased in the c-TAR group; however, no such events were observed in the s-TAR group. Both perioperative blood loss and the incidence of reoperation for bleeding were significantly lower in the s-TAR group. The in-hospital mortality rate was 0% in the s-TAR group and 4.9% in the c-TAR group. The s-TAR group had significantly shorter intensive care unit (ICU) stay and lower total hospitalization costs. Conclusions: The s-TAR technique is a safe and effective alternative for total arch reconstruction with shorter operation time, lower rate of postoperative complications and lower total hospitalization costs compared with c-TAR.

13.
Anal Chem ; 94(39): 13385-13395, 2022 10 04.
Article En | MEDLINE | ID: mdl-36130041

Spectroscopic profiling data used in analytical chemistry can be very high-dimensional. Dimensionality reduction (DR) is an effective way to handle the potential "curse of dimensionality" problem. Among the existing DR algorithms, many can be categorized as a matrix factorization (MF) problem, which decomposes the original data matrix X into the product of a low-dimensional matrix W and a dictionary matrix H. First, this paper provides a theoretical reformulation of relevant DR algorithms under a unified MF perspective, including PCA (principal component analysis), NMF (non-negative matrix factorization), LAE (linear autoencoder), RP (random projection), SRP (sparse random projection), VQ (vector quantization), AA (archetypical analysis), and ICA (independent component analysis). From this perspective, an open-sourced toolkit has been developed to integrate all of the above algorithms with a unified API. Second, we made a comparative study on MF-based DR algorithms. In a case study of TOF (time-of-flight) mass spectra, the eight algorithms extracted three components from the original 27,619 features. The results are compared by a set of DR quality metrics, e.g., reconstruction error, pairwise distance/ranking property, computational cost, local and global structure preservations, etc. Finally, based on the case study result, we summarized guidelines for DR algorithm selection. (1) For reconstruction quality, choose ICA. In the case study, ICA, PCA, and NMF have high reconstruction qualities (reconstruction error < 2%), ICA being the best. (2) To keep the pairwise topological structure, choose PCA. PCA best preserves the pairwise distance/ranking property. (3) For edge computing and IoT scenarios, choose RP or SRP if reconstruction is not required and the JL-lemma condition is met. The RP family has the best computational performance in the experiment, almost 10-100 times faster than its peers.


Algorithms , Principal Component Analysis , Spectrum Analysis
14.
Spectrochim Acta A Mol Biomol Spectrosc ; 278: 121348, 2022 Oct 05.
Article En | MEDLINE | ID: mdl-35550996

Daodi medicinal material plays an important role in traditional Chinese medicine (TCM). This study researches and validates the NNRW (neural network with random weights) model on spectroscopic profiling data for geographical origin identification. NNRW is a special neural network model that does not require an iterative training process. It has been proved effective in various resource-limited data-driven applications. However, whether NNRW works for spectroscopic profiling data remains to be explored. In this study, the Raman and UV (ultraviolet) profiling data of 160 radix astragali samples from four geographic regions are trained and evaluated by four classification models, i.e., NNRW, MLP (multi-layer perceptron), SVM (support vector machine), and DTC (decision tree classifier). Their validation accuracies are 96.3%, 98.0%, 98.4%, and 92.8% respectively. The training/fitting times are 0.372 ms (milli-seconds), 57.9 ms, 2.033 ms, and 3.351 ms, respectively. This study shows that NNRW has a significant training time cut while keeping a high prediction accuracy, and it is a promising solution to resource-limited edge computing applications.


Neural Networks, Computer , Support Vector Machine
15.
Anal Sci Adv ; 3(1-2): 29-37, 2022 Feb.
Article En | MEDLINE | ID: mdl-38716054

The compressed sensing (CS) theory requires the signal to be sparse under some transform. For most signals (e.g., speech and photos), the non-adaptive transform bases, such as discrete cosine transform (DCT), discrete Fourier transform (DFT), and Walsh-Hadamard transform (WHT), can meet this requirement and perform quite well. However, one limitation of these non-adaptive transforms is that we cannot leverage domain-specific knowledge to improve CS efficiency. This study presents a task-adaptive eigenvector-based projection (EBP) transform. The EBP basis has an equivalent effect of the principal component loading matrix and can generate a sparse representation in the latent space. In a Raman spectroscopic profiling case study, EBP demonstrates better performance than its non-adaptive counterparts. At the 1% CS sampling ratio (k), the reconstruction relative mean square errors of DCT, DFT, WHT and EBP are 0.33, 0.68, 0.32, and 0.00, respectively. At a fixed k, EBP achieves much better reconstruction quality than the non-adaptive counterparts. For specific domain tasks, EBP can significantly lower the CS sampling ratio and reduce the overall measurement cost.

16.
Adv Sci (Weinh) ; 8(19): e2101501, 2021 10.
Article En | MEDLINE | ID: mdl-34369094

The balance between antioxidants and reactive oxygen species (ROS) critically regulates tumor initiation and progression. However, whether and how the tumor-favoring redox status is controlled by cytokine networks remain poorly defined. Here, it is shown that IL-36γ and IL-36Ra reciprocally regulate the progression of non-small cell lung cancer (NSCLC) by modulating glutathione metabolism and ROS resolution. Knockout, inhibition, or neutralization of IL-36γ significantly inhibits NSCLC progression and prolongs survival of the KrasLSL-G12D/+ Tp53fl/fl and KrasLSL-G12D/+ Lkb1fl/fl mice after tumor induction, whereas knockout of IL-36Ra exacerbates tumorigenesis in these NSCLC mouse models and accelerates death of mice. Mechanistically, IL-36γ directly upregulates an array of genes involved in glutathione homeostasis to reduce ROS and prevent oxidative stress-induced cell death, which is mitigated by IL-36Ra or IL-36γ neutralizing antibody. Consistently, IL-36γ staining is positively and negatively correlated with glutathione biosynthesis and ROS in human NSCLC tumor biopsies, respectively. These findings highlight essential roles of cytokine networks in redox for tumorigenesis and provide potential therapeutic strategy for NSCLC.


Carcinoma, Non-Small-Cell Lung/metabolism , Cell Death/genetics , Glutathione/metabolism , Interleukin-1/metabolism , Lung Neoplasms/metabolism , Oxidative Stress/genetics , Receptors, Interleukin-1/metabolism , Animals , Carcinoma, Non-Small-Cell Lung/genetics , Disease Models, Animal , Disease Progression , Glutathione/genetics , Homeostasis/genetics , Humans , Interleukin-1/genetics , Lung Neoplasms/genetics , Mice , Mice, Inbred C57BL , Receptors, Interleukin-1/genetics
17.
Front Surg ; 8: 630624, 2021.
Article En | MEDLINE | ID: mdl-34026812

Background: Patients with acute aortic dissection type A (AADA) often have hypoxemia (partial pressure of oxygen [PaO2]/fraction of inspired oxygen [FiO2] <300 mmHg) before weaning in the intensive care unit (ICU). This study compared the efficacy of high-flow nasal cannula (HFNC) with that of conventional oxygen therapy (COT) in patients with AADA following Sun's procedure. Methods: The medical records of 87 adult patients with AADA who underwent Sun's procedure and met the inclusion criteria (PaO2/FiO2 <300 mmHg before weaning) were retrospectively analyzed. After surgery, 41 patients were treated with HFNC and 46 were treated with COT. The oxygenation level, FiO2, partial pressure of carbon dioxide, heart rate, respiratory rate, subjective discomfort, and reintubation rate were recorded. The difference in lung volume loss between the HFNC and COT groups was assessed using the radiological atelectasis score (chest radiograph) or calculated from three-dimensional (3D) reconstructed computed tomography (CT) images. Results: From day 1 to day 5 after weaning, there was no significant difference in PaO2/FiO2 between the HFNC and COT groups, although the FiO2 was significantly lower in the HFNC group than in the COT group (P < 0.05). Further studies indicated that the percentage of lung volume loss (pleural effusion and/or pulmonary atelectasis) by 3D reconstruction of CT images at 4-8 days post-operation was significantly lower in the HFNC group (P < 0.05). The subjective experience of breathing discomfort, reintubation rate, and length of stay in the ICU were significantly reduced in the HFNC group (P < 0.05). There was no significant difference in readmission to the ICU and in-hospital mortality between the two groups. Conclusions: HFNC can be used as an effective oxygen therapy for AADA patients with hypoxemia after Sun's procedure.

18.
Talanta ; 211: 120681, 2020 May 01.
Article En | MEDLINE | ID: mdl-32070569

Raman spectroscopy is widely used in discriminative tasks. It provides a wide-range physio-chemical fingerprint in a rapid and non-invasive way. The Raman spectrometry uses a sensor array to convert photon signals into digital spectroscopic data. This analog-to-digital process can benefit from the compressed sensing (CS) technique. The major benefits include less memory usage, shorter acquisition time, and more cost-efficient sensor. Traditional compressed sensing and reconstruction is a series of mathematical operations performed on the signal. Meanwhile, for discriminative tasks, both the signal and the categorical information are involved. For such scenarios, this paper proposes a method that uses both domain signal and categorical information to optimize CS hyper-parameters, including 1) the sampling ratio or the sensing matrix, 2) the basis matrix for the sparse transform, and 3) the regularization rate or shrinkage factor for L1-norm minimization. A case study of formula milk brand identification proves the proposed method can generate effective compressed sensing while preserving enough discriminative power in the reconstructed signal. Under the optimized hyper-parameters, a 100% classification accuracy is retained by only sampling 20% of the original signal.

19.
Mol Med Rep ; 18(1): 855-863, 2018 Jul.
Article En | MEDLINE | ID: mdl-29845245

Treatment with doxorubicin (DOX), which is an effective anticancer agent, is limited by cardiotoxicity. CUE domain­containing 2 (CUEDC2) serves a role in numerous cellular processes. The present study aimed to elucidate the potential function of CUEDC2 in DOX­induced cardiotoxicity. Cell Counting kit­8 assay demonstrated that DOX induced cytotoxicity of H9c2 cells in a dose­dependent manner. Flow cytometry demonstrated that downregulation of CUEDC2 reduced the levels of DOX­induced reactive oxygen species. Furthermore, compared with in the DOX­treated group, the activity of superoxide dismutase was increased in the DOX + small interfering RNA (si)CUEDC2 group; whereas, the malondialdehyde content was reduced in the DOX + siCUEDC2 group. In addition, flow cytometric analysis indicated that mitochondrial membrane potential was maintained following the depletion of CUEDC2. Furthermore, CUEDC2 downregulation significantly inhibited DOX­induced apoptosis. The expression levels of proapoptotic genes, including B­cell lymphoma 2 (Bcl­2)­associated X protein, cleaved caspase­3 and cytochrome c were inhibited by the depletion of CUEDC2. Conversely, the expression levels of the anti­apoptotic gene Bcl­2 were elevated in the CUEDC2 knockdown group. Downregulation of CUEDC2 also increased phosphorylation of protein kinase B and forkhead box O3a, and decreased the expression of Bcl­2­like protein 11 according to western blot analysis. Taken together, the present study demonstrated that CUEDC2 downregulation prevented DOX­induced cardiotoxicity in H9c2 cells. Therefore, CUEDC2 may be a promising target for the prevention of DOX­induced cardiotoxicity.


Cardiotoxicity/metabolism , Carrier Proteins/biosynthesis , Down-Regulation/drug effects , Doxorubicin/adverse effects , Membrane Proteins/biosynthesis , Myocytes, Cardiac/metabolism , Adaptor Proteins, Signal Transducing , Cardiotoxicity/genetics , Carrier Proteins/genetics , Cell Line , Doxorubicin/pharmacology , Forkhead Box Protein O3/genetics , Forkhead Box Protein O3/metabolism , Humans , Membrane Proteins/genetics , Myocytes, Cardiac/pathology , Proto-Oncogene Proteins c-akt/genetics , Proto-Oncogene Proteins c-akt/metabolism , Proto-Oncogene Proteins c-bcl-2/genetics , Proto-Oncogene Proteins c-bcl-2/metabolism , bcl-2-Associated X Protein/genetics , bcl-2-Associated X Protein/metabolism
20.
Cell Rep ; 22(9): 2442-2454, 2018 02 27.
Article En | MEDLINE | ID: mdl-29490279

TGF-ß has been demonstrated to promote tumor metastasis, and the regulatory mechanisms are poorly understood. Here, we report the role of USP2a in promoting metastasis by facilitating TGF-ß-triggered signaling. USP2a interacts with TGFBR1 and TGFBR2 upon TGF-ß stimulation and removes K33-linked polyubiquitin chains from Lys502 of TGFBR1, promoting the recruitment of SMAD2/3. Simultaneously, TGFBR2 phosphorylates Ser207/Ser225 of USP2a, leading to the disassociation of SMAD2/3 from TGFBR1. The phosphorylation of USP2a and SMAD2 is positively correlated in human tumor biopsies, and USP2a is hyper-phosphorylated in lung adenocarcinomas with lymph node invasion. Depletion or pharmacologic inhibition of USP2a dampens TGF-ß-triggered signaling and metastasis. Our findings have characterized an essential role of USP2a as a potential target for treatment of metastatic cancers.


Endopeptidases/metabolism , Neoplasm Metastasis/pathology , Signal Transduction , Transforming Growth Factor beta/metabolism , Ubiquitin-Specific Proteases/metabolism , Amino Acid Sequence , Animals , Endopeptidases/chemistry , Female , HEK293 Cells , Humans , Male , Mice, Inbred BALB C , Mice, Inbred C57BL , Phosphorylation , Polyubiquitin/metabolism , Promoter Regions, Genetic , Receptor, Transforming Growth Factor-beta Type I/metabolism , Receptor, Transforming Growth Factor-beta Type II/metabolism , Smad Proteins/metabolism , Ubiquitin Thiolesterase , Ubiquitin-Specific Proteases/chemistry , Ubiquitination
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