In silico energetic and molecular dynamic simulations studies demonstrate potential effect of the point mutations with implications for protein engineering in BDNF.

Protein engineering by directed evolution is time-consuming. Hence, in silico techniques like FoldX-Yasara for ∆∆G calculation, and SNPeffect for predicting propensity for aggregation, amyloid formation, and chaperone binding are employed to design proteins. Here, we used in silico techniques to engineer BDNF-NTF3 interaction and validated it using mutations with known functional implications for NGF dimer. The structures of three mutants representing a positive, negative, or neutral ∆∆G involving two interface residues in BDNF and two mutations representing a neutral and positive ∆∆G in NGF, which is aligned with BDNF, were selected for molecular dynamics (MD) simulation. Our MD results conclude that the secondary structure of individual protomers of the positive and negative mutants displayed a similar or different conformation from the NTF3 monomer, respectively. The positive mutants showed fewer hydrophobic interactions and higher hydrogen bonds compared to the wild-type, negative, and neutral mutants with similar SASA, suggesting solvent-mediated disruption of hydrogen-bonded interactions. Similar results were obtained for mutations with known functional implications for NGF and BDNF. The results suggest that mutations with known effects in homologous proteins could help in validation, and in silico directed evolution experiments could be a viable alternative to the experimental technique used for protein engineering.

Proficient mycogenic synthesis of silver nanoparticles by soil derived fungus Aspergillus melleus SSS-10 with cytotoxic and antibacterial potency.

The present study aimed at evaluating the extracellular synthesis of silver nanoparticles by soil fungus Aspergillus melleus SSS-10 for antibacterial and cytotoxic activity. In this study, the formation of silver nanoparticles (AgNPs) was estimated by the colour change in cell free extract from pale yellow to golden yellow after 24 h of the reaction. UV-Vis study showed the absorbance maxima at 410 nm. Tauc plot analysis revealed the band gap energy as 2.34 eV. Dynamic Light Scattering (DLS) data revealed polydisperse anisotropic silver nanoparticles with average hydrodynamic diameter of 92.006 nm. Zeta potential of - 19.6 mV provided evidence of stable silver nanoparticles. X-ray diffraction (XRD) analysis revealed four prominent Bragg peaks corresponding to (111), (200), (220) and (311) planes characteristic of silver (Ag) in FCC structural configuration. Average crystallite size was found to be 87.3 nm from Scherrer equation. Scanning Electron Microscope (SEM) analysis revealed irregular morphology of silver nanoparticles. EDS analysis displayed characteristic energy peaks of silver from 2.72 keV to 3.52 keV confirming the presence of silver nanoparticles. Biosynthesized AgNPs exhibited strong cytotoxic potential on MG-63 cells. AgNPs also showed antibacterial activity against both Staphylococcus aureus and Escherichia coli. In conclusion, this study provides a platform to explore the utility of fungal mediated silver nanoparticles synthesized for various pharmaceutical and cosmeceutical applications.