Sequencing Bait: Nuclear and Mitogenome Assembly of an Abundant Coastal Tropical and Subtropical Fish, Atherinomorus stipes.

Genetic data from nonmodel species can inform ecology and physiology, giving insight into a species' distribution and abundance as well as their responses to changing environments, all of which are important for species conservation and management. Moreover, reduced sequencing costs and improved long-read sequencing technology allows researchers to readily generate genomic resources for nonmodel species. Here, we apply Oxford Nanopore long-read sequencing and low-coverage (∼1x) whole genome short-read sequencing technology (Illumina) to assemble a genome and examine population genetics of an abundant tropical and subtropical fish, the hardhead silverside (Atherinomorus stipes). These fish are found in shallow coastal waters and are frequently included in ecological models because they serve as abundant prey for commercially and ecologically important species. Despite their importance in sub-tropical and tropical ecosystems, little is known about their population connectivity and genetic diversity. Our A. stipes genome assembly is about 1.2 Gb with comparable repetitive element content (∼47%), number of protein duplication events, and DNA methylation patterns to other teleost fish species. Among five sampled populations spanning 43 km of South Florida and the Florida Keys, we find little population structure suggesting high population connectivity.

Reproductive strategies and seasonal changes in the somatic indices of seven small-bodied fishes in Atlantic Canada in relation to study design for environmental effects monitoring.

Small-bodied fishes are more commonly being used in environmental effects monitoring (EEM) studies. There is a lack of understanding of the biological characteristics of many small-bodied species, which hinders study designs for monitoring studies. For example, 72% of fish population surveys in Canada's EEM program for pulp and paper mills that used small-bodied fishes were conducted outside of the reproductive period of the species. This resulted in an inadequate assessment of the EEM program's primary effect endpoint (reproduction) for these studies. The present study examined seasonal changes in liver size, gonad size, and condition in seven freshwater and estuarine small-bodied fishes in Atlantic Canada. These data were used to examine differences in reproductive strategies and patterns of energy storage among species. Female gonadal recrudescence in all seven species began primarily in the 2-month period in the spring before spawning. Male gonadal development was concurrent with females in five species; however, gonadal recrudescence began in the fall in male three-spined stickleback (Gasterosteus aculeatus) and slimy sculpin (Cottus cognatus). The spawning period for each species was estimated from the decline in relative ovary size after its seasonal maximum value in spring. The duration of the spawning period reflected the reproductive strategy (single vs multiple spawning) of the species. Optimal sampling periods to assess reproductive impacts in each species were determined based on seasonal changes in ovary size and were identified to be during the prespawning period when gonads are developing and variability in relative gonad size is at a minimum.

The potential use of Atlantic silverside (Menidia menidia) for monitoring estuarine pollution.

Monitoring chronic impacts of nearshore pollution on fish in Atlantic marine systems is challenging due to the mobility and seasonal nature of most habitat use. We evaluated Atlantic silverside (Menidia menidia) as a potential indicator of pollution across a gradient of contaminated sites in the Saint John River Estuary, New Brunswick, Canada. Fish returning from offshore in the spring showed no differences in length, weight, or condition factor between sites, but a graded response in condition factor appeared gradually, consistent with levels of contamination. Gonad size peaked in early June, however no differences in GSI were found among sites. By September, most fish collected were young of the year, with a significant bias towards female juveniles at the exposed site. These results indicate that Atlantic silverside are locally resident during their onshore period, and demonstrates their potential as a sentinel species. Sampling should focus on early June prior to the full moon to ensure maximal exposure periods before spawning, or in late October to evaluate growth as fish grow rapidly prior to offshore movement.

Cross-cultural generalizability of a cusp catastrophe model for binge drinking among college students.

We examined whether a cusp catastrophe model for binge alcohol consumption by college students that was reported earlier (Smerz & Guastello, 2008) could generalize to another culture. Participants were 130 undergraduates enrolled in economics courses at a private urban Japanese university. They completed the same questionnaire items that were used in the previous US study. For some analyses, a stratified random subsample was taken from the earlier US data that was comparable in number, age, and gender proportions (N = 132). Results for the combined sample showed essentially the same results that were obtained from the US sample: Binge drinking can be modeled as a cusp catastrophe with two stable states of behavior - low to moderate consumption and binge level consumption. The two control parameters were peer influence (bifurcation) and attitude toward alcohol use (asymmetry). The nonlinear models (average R2 = .74) accounted for considerably more variance in binge drinking and other alcohol consumption indices than the comparison linear models (average r2 = .18 ). There were some subtle differences between the two samples of students, however.