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1.
J Diabetes Res ; 2024: 5511454, 2024.
Article En | MEDLINE | ID: mdl-38736904

Adipose tissue dysfunction is seen among obese and type 2 diabetic individuals. Adipocyte proliferation and hypertrophy are the root causes of adipose tissue expansion. Solute carrier family 25 member 28 (SLC25A28) is an iron transporter in the inner mitochondrial membrane. This study is aimed at validating the involvement of SLC25A28 in adipose accumulation by tail vein injection of adenovirus (Ad)-SLC25A28 and Ad-green fluorescent protein viral particles into C57BL/6J mice. After 16 weeks, the body weight of the mice was measured. Subsequently, morphological analysis was performed to establish a high-fat diet (HFD)-induced model. SLC25A28 overexpression accelerated lipid accumulation in white and brown adipose tissue (BAT), enhanced body weight, reduced serum triglyceride (TG), and impaired serum glucose tolerance. The protein expression level of lipogenesis, lipolysis, and serum adipose secretion hormone was evaluated by western blotting. The results showed that adipose TG lipase (ATGL) protein expression was reduced significantly in white and BAT after overexpression SLC25A28 compared to the control group. Moreover, SLC25A28 overexpression inhibited the BAT formation by downregulating UCP-1 and the mitochondrial biosynthesis marker PGC-1α. Serum adiponectin protein expression was unregulated, which was consistent with the expression in inguinal white adipose tissue (iWAT). Remarkably, serum fibroblast growth factor (FGF21) protein expression was negatively related to the expansion of adipose tissue after administrated by Ad-SLC25A28. Data from the current study indicate that SLC25A28 overexpression promotes diet-induced obesity and accelerates lipid accumulation by regulating hormone secretion and inhibiting lipolysis in adipose tissue.


Adipogenesis , Adipose Tissue, Brown , Adipose Tissue, White , Diet, High-Fat , Lipase , Mice, Inbred C57BL , Animals , Mice , Male , Adipose Tissue, Brown/metabolism , Adipose Tissue, White/metabolism , Lipase/metabolism , Lipase/genetics , Obesity/metabolism , Lipolysis , Uncoupling Protein 1/metabolism , Fibroblast Growth Factors/metabolism , Cation Transport Proteins/metabolism , Cation Transport Proteins/genetics , Adipocytes/metabolism , Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha/metabolism , Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha/genetics , Lipogenesis , Acyltransferases
2.
Front Bioeng Biotechnol ; 12: 1395731, 2024.
Article En | MEDLINE | ID: mdl-38742205

Purpose: Early gastrointestinal tumors can be removed by endoscopic procedures. Endoscopic mucosal dissection (ESD) requires submucosal fluid injection to provide mucosal elevation and prevent intraoperative perforation. However, the clinically applied normal saline mucosal elevation height is low for a short time, which often requires multiple intraoperative injections that increase the inconvenience and procedure time. In addition, recently researched submucosal injection materials (SIM) suffer from complex preparation, poor economy, and poor biocompatibility. Therefore, there is an urgent need for a new type of SIM that can provide long, safe and effective mucosal elevation in support of the endoscopic procedures. Methods: The FS hydrogel is based on polyethylene-polypropylene glycol (F-127) mixed with sodium alginate (SA). The different physicochemical properties of FS hydrogels were characterized through various experiments. Afterward, various biosafety assessments were carried out. Finally, the performance of FS hydrogels was evaluated by in vitro submucosal injection and in vivo swine ESD. Results: The experimental results show that the FS hydrogel is liquid at room temperature, making it easy to inject, and when injected under the mucosa, it undergoes temperature-induced cross-linking, transforming from a liquid to a solid state to provide long-lasting mucosal augmentation. At the same time, the FS hydrogel exhibits controllable gelation, stability, and biocompatibility. The results of in vitro submucosal injections and in vivo ESD procedures showed that FS achieves high mucosal augmentation and provides good submucosal cushioning in the long term. Conclusion: In summary, the F-127/SA hydrogel is simple to synthesize, cost-effective, safe, easy to store, and able to assist ESD well from the perspective of practical clinical problems, indicating that the FS hydrogel can be an ideal potent submucosal injection substitution.

3.
EBioMedicine ; 103: 105138, 2024 May.
Article En | MEDLINE | ID: mdl-38678809

BACKGROUND: Biliary atresia (BA) is a neonatal fibro-inflammatory cholangiopathy with ductular reaction as a key pathogenic feature predicting poor survival. Mucosal-associated invariant T (MAIT) cells are enriched in human liver and display multiple roles in liver diseases. We aimed to investigate the function of MAIT cells in BA. METHODS: First, we analyzed correlations between liver MAIT cell and clinical parameters (survival, alanine transaminase, bilirubin, histological inflammation and fibrosis) in two public cohorts of patients with BA (US and China). Kaplan-Meier survival analysis and spearman correlation analysis were employed for survival data and other clinical parameters, respectively. Next, we obtained liver samples or peripheral blood from BA and control patients for bulk RNA sequencing, flow cytometry analysis, immunostaning and functional experiments of MAIT cells. Finally, we established two in vitro co-culture systems, one is the rhesus rotavirus (RRV) infected co-culture system to model immune dysfunction of human BA which was validated by single cell RNA sequencing and the other is a multicellular system composed of biliary organoids, LX-2 and MAIT cells to evaluate the role of MAIT cells on ductular reaction. FINDINGS: Liver MAIT cells in BA were positively associated with low survival and ductular reaction. Moreover, liver MAIT cells were activated, exhibited a wound healing signature and highly expressed growth factor Amphiregulin (AREG) in a T cell receptor (TCR)-dependent manner. Antagonism of AREG abrogated the proliferative effect of BA MAIT cells on both cholangiocytes and biliary organoids. A RRV infected co-culture system, recapitulated immune dysfunction of human BA, disclosed that RRV-primed MAIT cells promoted cholangiocyte proliferation via AREG, and further induced inflammation and fibrosis in the multicellular system. INTERPRETATION: MAIT cells exhibit a wound healing signature depending on TCR signaling and promote ductular reaction via AREG, which is associated with advanced fibrosis and predictive of low survival in BA. FUNDING: This work was funded by National Natural Science Foundation of China grant (82001589 and 92168108), National Key R&D Program of China (2023YFA1801600) and by Basic and Applied Basic Research Foundation of Guangdong (2020A1515110921).


Amphiregulin , Biliary Atresia , Mucosal-Associated Invariant T Cells , Humans , Biliary Atresia/pathology , Biliary Atresia/metabolism , Biliary Atresia/immunology , Amphiregulin/metabolism , Amphiregulin/genetics , Mucosal-Associated Invariant T Cells/immunology , Mucosal-Associated Invariant T Cells/metabolism , Male , Female , Liver/metabolism , Liver/pathology , Liver/immunology , Coculture Techniques , Bile Ducts/metabolism , Bile Ducts/pathology , Biomarkers , Infant
4.
Int J Biol Macromol ; 262(Pt 2): 130033, 2024 Mar.
Article En | MEDLINE | ID: mdl-38342261

Antibacterial and active packaging materials have gained significant research attention in response to the growing interest in food packaging. In this investigation, we developed hydrogel packaging materials with antibacterial and antioxidant properties by incorporating chitooligosaccharide (COS) and fish skin gelatin (FSG) nanofiber membranes, which readily absorbed water and exhibited swelling characteristics. The nanofiber membranes were fabricated by electrospinning technology, embedding COS within FSG, and subsequently crosslinked through the Maillard reaction facilitated by the addition of glucose. The behavior of conductivity, viscosity, and surface tension in the spinning solutions was analyzed to understand their variation patterns. Scanning electron microscopy (SEM) results revealed that the crosslinked COS/FSG nanofiber membranes possessed a uniform yet disordered fiber structure, with the diameter of the nanofibers increasing as the COS content increased. Remarkably, when the COS content reached 25 %, the COS/FSG nanofiber membranes (CF-C-25) exhibited a suitable fiber diameter of 437.16 ± 63.20 nm. Furthermore, the thermal crosslinking process involving glucose supplementation enhanced the hydrophobicity of CF-C-25. Upon hydration, the CF-H-25 hydrogel displayed a distinctive porous structure, exhibiting a remarkable swelling rate of 954 %. Notably, the inclusion of COS significantly augmented the antibacterial and antioxidant properties of the hydrogel-based nanofiber membranes. CF-H-25 demonstrated an impressive growth inhibition of 90.56 ± 5.91 % against E. coli, coupled with excellent antioxidant capabilities. In continuation, we performed a comprehensive analysis of the total colony count, pH, TVB-N, and TBA of crucian carp. The CF-H-25 hydrogel proved highly effective in extending the shelf life of crucian carp by 2-4 days, suggesting its potential application as an edible membrane for aquatic product packaging.


Chitosan , Nanofibers , Oligosaccharides , Sulfanilamides , Animals , Nanofibers/chemistry , Gelatin/chemistry , Antioxidants/pharmacology , Antioxidants/chemistry , Escherichia coli , Hydrogels/pharmacology , Anti-Bacterial Agents/pharmacology , Chitin , Glucose
5.
Opt Express ; 31(16): 26245-26253, 2023 Jul 31.
Article En | MEDLINE | ID: mdl-37710489

In this work, by comparing and analyzing dynamic biasing InGaAs/InAlAs avalanche photodiodes(APDs) with different active areas, it is found that they have different noise suppression frequency ranges. The upper limit frequency(defined as the frequency at which the noise suppression effect begins to fail) of InGaAs/InAlAs APDs with active area diameter of 50 µm, 100 µm and 200 µm are 2400 MHz, 1990MHz and 1400 MHz respectively. In addition, for InGaAs/InAlAs APDs with an active area diameter of 50 µm, 100 µm and 200 µm, their optimal frequencies of dynamic biasing (defined as the frequency corresponding to the optimal SNR) are 1877MHz, 1670 MHz and 1075 MHz respectively. At last, applying dynamic biasing technology, it achieves a useful gain of 6698.1, which is much greater than that of DC bias (47.2), and this technology has the potential to be applied in high sensitivity laser radar receivers.

6.
J Colloid Interface Sci ; 651: 304-318, 2023 Dec.
Article En | MEDLINE | ID: mdl-37544220

The difficulty of achieving both high conversion rate and high selectivity is a huge challenge in the catalytic aerobic oxidation of cyclohexane. In this paper, bismuth tungstate-bismuth oxychloride (Bi2WO6-BiOCl) nanoflower heterojunctions prepared via a one-step solvothermal process were applied in the photo-thermo synergetic catalytic oxidation of cyclohexane in the dried air. With the addition of little water at different reaction temperature, the ratio of bismuth to tungsten and the mass ratio of Bi2WO6 to BiOCl can be precisely tailored in the nanoflower sphere composites with thin nanosheets. Their microscopic morphology, elemental composition, crystal structure, and photoelectrochemical characteristics were explored by different characterization methods. The Bi2WO6-BiOCl composites possessed poor photocatalytic and thermal performances with the low conversion rates of 1.43% and 2.68%, respectively. However, through the photo-thermo catalytic oxidation process, an exceptional conversion rate of 13.32% was achieved with excellent selectivity of 99.22% for cyclohexanone and cyclohexanol (KA oil) using the same Bi2WO6-BiOCl composites. This superior performance outstrips Bi2WO6 flowers, BiOCl nanosheets and Bi2WO6-BiOCl composites with other compounding ratios. The creation of a high-low heterojunction in the Bi2WO6-BiOCl composite was confirmed by band energy analysis. The opto-electronic analysis, band energy analysis, sacrifice experiments, and active radical analysis were employed to elucidate the mechanism for the exceptional photo-thermo catalytic performance in detail. This work offers an exploratory solution to the challenges of high energy consumption and the difficulty in simultaneously achieving high selectivity and high conversion rates in cyclohexane oxidation, thus holding significant value.

7.
EMBO Rep ; 24(9): e55494, 2023 09 06.
Article En | MEDLINE | ID: mdl-37493024

Human CST (CTC1-STN1-TEN1) is a ssDNA-binding complex that interacts with the replisome to aid in stalled fork rescue. We previously found that CST promotes telomere replication to maintain genomic integrity via G-quadruplex (G4) resolution. However, the detailed mechanism by which CST resolves G4s in vivo and whether additional factors are involved remains unclear. Here, we identify RECQ4 as a novel CST-interacting partner and show that RECQ4 can unwind G4 structures in vitro using a FRET assay. Moreover, G4s accumulate at the telomere after RECQ4 depletion, resulting in telomere dysfunction, including the formation of MTSs, SFEs, and TIFs, suggesting that RECQ4 is crucial for telomere integrity. Furthermore, CST is also required for RECQ4 telomere or chromatin localization in response to G4 stabilizers. RECQ4 is involved in preserving genomic stability by CST and RECQ4 disruption impairs restart of replication forks stalled by G4s. Overall, our findings highlight the essential roles of CST and RECQ4 in resolving G-rich regions, where they collaborate to resolve G4-induced replication deficiencies and maintain genomic homeostasis.


DNA Replication , G-Quadruplexes , Humans , Telomere-Binding Proteins/genetics , Telomere Homeostasis , Telomere/metabolism
8.
Nucleic Acids Res ; 51(10): 4914-4928, 2023 06 09.
Article En | MEDLINE | ID: mdl-37021555

CST (CTC1-STN1-TEN1) is a telomere associated complex that binds ssDNA and is required for multiple steps in telomere replication, including termination of G-strand extension by telomerase and synthesis of the complementary C-strand. CST contains seven OB-folds which appear to mediate CST function by modulating CST binding to ssDNA and the ability of CST to recruit or engage partner proteins. However, the mechanism whereby CST achieves its various functions remains unclear. To address the mechanism, we generated a series of CTC1 mutants and studied their effect on CST binding to ssDNA and their ability to rescue CST function in CTC1-/- cells. We identified the OB-B domain as a key determinant of telomerase termination but not C-strand synthesis. CTC1-ΔB expression rescued C-strand fill-in, prevented telomeric DNA damage signaling and growth arrest. However, it caused progressive telomere elongation and the accumulation of telomerase at telomeres, indicating an inability to limit telomerase action. The CTC1-ΔB mutation greatly reduced CST-TPP1 interaction but only modestly affected ssDNA binding. OB-B point mutations also weakened TPP1 association, with the deficiency in TPP1 interaction tracking with an inability to limit telomerase action. Overall, our results indicate that CTC1-TPP1 interaction plays a key role in telomerase termination.


Telomerase , Humans , Cell Line , DNA, Single-Stranded/genetics , Mutation , Telomerase/genetics , Telomerase/metabolism , Telomere/genetics , Telomere/metabolism , Telomere Homeostasis , Telomere-Binding Proteins/genetics , Telomere-Binding Proteins/metabolism
9.
Front Pediatr ; 10: 1050326, 2022.
Article En | MEDLINE | ID: mdl-36440333

Biliary atresia (BA) is a devastating cholangiopathy in neonate. Transcription factors (TFs), a type of master regulators in biological processes and diseases, have been implicated in pathogenesis of BA. However, a global view of TFs and how they link to clinical presentations remain explored. Here, we perform a joint transcriptional regulatory network and protein activity inference analysis in order to investigate transcription factor activity in BA. By integration of three independent human BA liver transcriptome datasets, we identify 22 common master regulators, with 14 activated- and 8 repressed TFs. Gene targets of activated TFs are enriched in biological processes of SMAD, NF-kappaB and TGF-beta, while those of repressed TFs are related to lipid metabolism. Mining the clinical association of TFs, we identify inflammation-, fibrosis- and survival associated TFs. In particular, ZNF14 is predictive of poor survival and advanced live fibrosis. Supporting this observation, ZNF14 is positively correlated with T helper cells, cholangiocytes and hepatic stellate cells. In sum, our analysis reveals key clinically associated master regulators for BA.

10.
Opt Express ; 30(15): 26484-26491, 2022 Jul 18.
Article En | MEDLINE | ID: mdl-36236839

In this work, a high signal-noise ratio (SNR) dynamic biasing InGaAs/InAlAs avalanche photodiode (APD) is demonstrated experimentally and first applied in a laser radar system. Combining with the dynamic biasing technology, the APDs are operated in an unexploited voltage range between linear mode and Geiger mode, which, in this work, is defined as a transition zone. Surprisingly, it is found that the excess noise of dynamic biasing APDs decreases with the gain in this transition zone. As expected, the maximum useful gain is as high as 620 in the dynamic biasing mode, which shows a greater promotion than that of the DC biasing mode (17.5). Compared with the traditional DC biasing mode, the optimal SNR for dynamic biasing mode is improved by 14 dB without the degradation of response time as the peak optical power is 525 nW. Moreover, when SNR = 10, the peak optical power for the dynamic biasing mode is 43.4 nW, which shows a 57.5-fold (17.6 dB) reduction in comparison with the DC biasing mode (2495 nW). Therefore, we believe this new optical receiver will pave a new way in high-sensitivity and high-speed light detection.

11.
Sensors (Basel) ; 22(20)2022 Oct 12.
Article En | MEDLINE | ID: mdl-36298075

With the rapid development of photo-communication technologies, avalanche photodiode (APD) will play an increasingly important role in the future due to its high quantum efficiency, low power consumption, and small size. The monolithic integration of optical components and signal processing electronics on silicon substrate chips is crucial to driving cost reduction and performance improvement; thus, the technical research on InGaAs/Si APD is of great significance. This work is the first to demonstrate the use of a photon-trapping (PT) structure to improve the performance of the InGaAs/Si APD based on an SOI substrate, which exhibits very high absorption efficiency at 1310 nm wavelength while the thickness of the absorption layer is kept at 800 nm. Based on the optical and electrical simulations, an optimized InGaAs/Si PT-APD is proposed, which exhibits a better performance and a higher responsivity compared to the original InGaAs/Si APD.

12.
Front Genet ; 13: 859617, 2022.
Article En | MEDLINE | ID: mdl-35368664

The CTC1-STN1-TEN1 (CST) complex plays a crucial role in telomere replication and genome stability. However, the detailed mechanisms of CST regulation in cancer remain largely unknown. Here, we perform a comprehensive analysis of CST across 33 cancer types using multi-omic data from The Cancer Genome Atlas. In the genomic landscape, we identify CTC1/STN1 deletion and mutation and TEN1 amplification as the dominant alteration events. Expressions of CTC1 and STN1 are decreased in tumors compared to those in adjacent normal tissues. Clustering analysis based on CST expression reveals three cancer clusters displaying differences in survival, telomerase activity, cell proliferation, and genome stability. Interestingly, we find that CTC1 and STN1, but not TEN1, are co-expressed and associated with better survival. CTC1-STN1 is positively correlated with CD8 T cells and B cells and predicts a better response to immune checkpoint blockade in external datasets of cancer immunotherapy. Pathway analysis shows that MYC targets are negatively correlated with CTC1-STN1. We experimentally validated that knockout of CTC1 increased the mRNA level of c-MYC. Furthermore, CTC1 and STN1 are repressed by miRNAs and lncRNAs. Finally, by mining the connective map database, we discover a number of potential drugs that may target CST. In sum, this study illustrates CTC1-STN1 as a protective factor and provides broad molecular signatures for further functional and therapeutic studies of CST in cancer.

13.
J Colloid Interface Sci ; 607(Pt 2): 954-966, 2022 Feb.
Article En | MEDLINE | ID: mdl-34583052

The highly selective oxidation of cyclohexane to cyclohexanone and cyclohexanol (KA oil) is one of the most challenging issues in the chemical industry. However, the difficulty in attaining high selectivity and high conversion rate in parallel for the existing catalysts limits its practical application. In this paper, a novel photo-thermo synergistic catalyst was reported for the aerobic oxidation of cyclohexane. The uniform blue MoO3-x nanowires with small diameter stabilized by polyvinyl pyrrolidone (PVP) were synthesized by a hydrothermal method, and a series of MoO3-x-AgPd composite materials of different proportions were prepared by an in-situ reduction process. The morphology, crystalline structure, surface chemical bonding, photoelectrochemical properties of MoO3-x-AgPd composites are thoroughly characterized. The MoO3-x-AgPd composites present significantly increased catalytic performance than MoO3-x nanowires in the photo-thermo synergistic catalytic oxidation of cyclohexane under dry air. The high conversion rate of 11.3% with the KA oil selectivity of 99.0% was achieved by the MoO3-x-Ag20Pd20 composites under photo-thermo catalytic process at 120 ℃, which is 1.5 times of that by MoO3-x nanowires. Under photo-thermo catalytic process, a high cyclohexane conversion rate similar to that of higher temperature thermal catalysis can be obtained at lower reaction temperature, and more cyclohexanol can be produced with a ketone to alcohol (K/A) ratio of 0.254. The significantly enhanced catalytic activity can be attributed to the effective charge transfer in the AgPd alloy nanoparticles, the optimized band gap structure, the suppressed charge recombination, and the promoted photo-thermo synergetic catalytic effect. This work provides a new reference scheme for the design and preparation of high-efficiency photo-thermo catalysts for the selective oxidation of cyclohexane.

14.
Brief Bioinform ; 22(5)2021 09 02.
Article En | MEDLINE | ID: mdl-33497432

Shelterin, a protective complex at telomeres, plays essential roles in cancer. In addition to maintain telomere integrity, shelterin functions in various survival pathways. However, the detailed mechanisms of shelterin regulation in cancer remain elusive. Here, we perform a comprehensive analysis of shelterin in 9125 tumor samples across 33 cancer types using multi-omic data from The Cancer Genome Atlas, and validate some findings in Chinese Glioma Genome Atlas and cancer cell lines from Cancer Cell Line Encyclopedia. In the genomic landscape, we identify the amplification of TRF1 and POT1, co-amplification/deletion of TRF2-RAP1-TPP1 as the dominant alteration events. Clustering analysis based on shelterin expression reveals three cancer clusters with different degree of genome instability. To measure overall shelterin activity in cancer, we derive a shelterin score based on shelterin expression. Pathway analysis shows shelterin is positively correlated with E2F targets, while is negatively correlated with p53 pathway. Importantly, shelterin links to tumor immunity and predicts response to PD-1 blockade immune therapy. In-depth miRNA analysis reveals a miRNA-shelterin interaction network, with p53 regulated miRNAs targeting multiple shelterin components. We also identify a significant amount of lncRNAs regulating shelterin expression. In addition, we find shelterin expression could be used to predict patient survival in 24 cancer types. Finally, by mining the connective map database, we discover a number of potential drugs that might target shelterin. In summary, this study provides broad molecular signatures for further functional and therapeutic studies of shelterin, and also represents a systemic approach to characterize key protein complex in cancer.


Gene Expression Regulation, Neoplastic , Mutation Rate , Neoplasms/genetics , Neoplasms/mortality , Telomere-Binding Proteins/genetics , Transcriptome , Cluster Analysis , Databases, Genetic , Genomic Instability , Humans , Immune Checkpoint Inhibitors/pharmacology , Immune Checkpoint Inhibitors/therapeutic use , Immunotherapy/methods , MicroRNAs/genetics , MicroRNAs/metabolism , Neoplasms/metabolism , Neoplasms/therapy , Prognosis , Programmed Cell Death 1 Receptor/antagonists & inhibitors , Programmed Cell Death 1 Receptor/genetics , Programmed Cell Death 1 Receptor/metabolism , Protein Interaction Maps/genetics , RNA, Long Noncoding/genetics , RNA, Long Noncoding/metabolism , Shelterin Complex , Survival Rate , Telomere/genetics , Telomere/metabolism , Telomere-Binding Proteins/metabolism , Treatment Outcome
15.
Mol Cancer ; 18(1): 106, 2019 06 10.
Article En | MEDLINE | ID: mdl-31179925

BACKGROUND: Cancer cells become immortalized through telomere maintenance mechanisms, such as telomerase reverse transcriptase (TERT) activation. In addition to maintaining telomere length, TERT activates manifold cell survival signaling pathways. However, telomerase-associated gene signatures in cancer remain elusive. METHODS: We performed a systematic analysis of TERT high (TERThigh) and low (TERTlow) cancers using multidimensional data from The Cancer Genome Atlas (TCGA). Multidimensional data were analyzed by propensity score matching weight algorithm. Coexpression networks were constructed by weight gene coexpression network analysis (WGCNA). Random forest classifiers were generated to identify cancer subtypes. RESULTS: The TERThigh-specific mRNA expression signature is associated with cell cycle-related coexpression modules across cancer types. Experimental screening of hub genes in the cell cycle module suggested TPX2 and EXO1 as potential regulators of telomerase activity and cell survival. MiRNA analysis revealed that the TERThigh-specific miR-17-92 cluster can target biological processes enriched in TERTlow cancer and that its expression is negatively correlated with the tumor/normal telomere length ratio. Intriguingly, TERThigh cancers tend to have mutations in extracellular matrix organization genes and amplify MAPK signaling. By mining the clinical actionable gene database, we uncovered a number of TERThigh-specific somatic mutations, amplifications and high expression genes containing therapeutic targets. Finally, a random forest classifier integrating telomerase-associated multi-omics signatures identifies two cancer subtypes showed profound differences in telomerase activity and patient survival. CONCLUSIONS: In summary, our results depict a telomerase-associated molecular landscape in cancers and provide therapeutic opportunities for cancer treatment.


Gene Expression Profiling/methods , Gene Regulatory Networks , MicroRNAs/genetics , Neoplasms/genetics , Telomerase/metabolism , Cell Cycle Proteins/genetics , Cell Line, Tumor , DNA Repair Enzymes/genetics , Exodeoxyribonucleases/genetics , Gene Amplification , Gene Expression Regulation, Neoplastic , Hep G2 Cells , Humans , Microtubule-Associated Proteins/genetics , Mutation , Neoplasms/enzymology , Promoter Regions, Genetic , Propensity Score
16.
Nat Commun ; 9(1): 2827, 2018 07 19.
Article En | MEDLINE | ID: mdl-30026550

Telomerase elongates the telomeric G-strand to prevent telomere shortening through conventional DNA replication. However, synthesis of the complementary C-strand by DNA polymerase α is also required to maintain telomere length. Polymerase α cannot perform this role without the ssDNA binding complex CST (CTC1-STN1-TEN1). Here we describe the roles of individual CST subunits in telomerase regulation and G-overhang maturation in human colon cancer cells. We show that CTC1-STN1 limits telomerase action to prevent G-overhang overextension. CTC1-/- cells exhibit telomeric DNA damage and growth arrest due to overhang elongation whereas TEN1-/- cells do not. However, TEN1 is essential for C-strand synthesis and TEN1-/- cells exhibit progressive telomere shortening. DNA binding analysis indicates that CTC1-STN1 retains affinity for ssDNA but TEN1 stabilizes binding. We propose CTC1-STN1 binding is sufficient to terminate telomerase action but altered DNA binding dynamics renders CTC1-STN1 unable to properly engage polymerase α on the overhang for C-strand synthesis.


DNA/biosynthesis , Gene Expression Regulation, Neoplastic , Telomerase/genetics , Telomere Homeostasis , Telomere-Binding Proteins/genetics , CRISPR-Cas Systems , DNA Damage , DNA Polymerase I/genetics , DNA Polymerase I/metabolism , Gene Editing , HCT116 Cells , HEK293 Cells , Humans , Plasmids/chemistry , Plasmids/metabolism , Protein Binding , Signal Transduction , Telomerase/metabolism , Telomere/chemistry , Telomere/ultrastructure , Telomere Shortening , Telomere-Binding Proteins/metabolism , Transfection
17.
Mol Cell ; 70(3): 395-407.e4, 2018 05 03.
Article En | MEDLINE | ID: mdl-29727616

Telomeres and telomere-binding proteins form complex secondary nucleoprotein structures that are critical for genome integrity but can present serious challenges during telomere DNA replication. It remains unclear how telomere replication stress is resolved during S phase. Here, we show that the BUB3-BUB1 complex, a component in spindle assembly checkpoint, binds to telomeres during S phase and promotes telomere DNA replication. Loss of the BUB3-BUB1 complex results in telomere replication defects, including fragile and shortened telomeres. We also demonstrate that the telomere-binding ability of BUB3 and kinase activity of BUB1 are indispensable to BUB3-BUB1 function at telomeres. TRF2 targets BUB1-BUB3 to telomeres, and BUB1 can directly phosphorylate TRF1 and promote TRF1 recruitment of BLM helicase to overcome replication stress. Our findings have uncovered previously unknown roles for the BUB3-BUB1 complex in S phase and shed light on how proteins from diverse pathways function coordinately to ensure proper telomere replication and maintenance.


Cell Cycle Proteins/genetics , DNA Replication/genetics , Poly-ADP-Ribose Binding Proteins/genetics , Protein Serine-Threonine Kinases/genetics , Telomere/genetics , Cell Line , Cell Line, Tumor , DNA Helicases/genetics , HEK293 Cells , HeLa Cells , Humans , M Phase Cell Cycle Checkpoints/genetics , S Phase/genetics , Spindle Apparatus/genetics , Telomere-Binding Proteins/genetics
18.
Biochim Biophys Acta Mol Cell Biol Lipids ; 1862(12): 1512-1519, 2017 Dec.
Article En | MEDLINE | ID: mdl-28919478

Statins have been proven to be effective in treating non-alcoholic fatty liver disease (NAFLD). Recently, it was reported that statins decreased the hepatic expression of perilipin 5 (Plin5), a lipid droplet (LD)-associated protein, which plays critical roles in regulating lipid accumulation and lipolysis in liver. However, the function and regulation mechanism of Plin5 have not yet been well-established in NAFLD treatment with statins. In this study, we observed that atorvastatin moderately reduced the expression of Plin5 in livers without changing the protein level of Plin5 in the hepatic LD fraction of mice fed with high-fat diet (HFD). Intriguingly, atorvastatin stimulated the PKA-mediated phosphorylation of Plin5 and reduced the triglyceride (TG) accumulation in hepatocytes with overexpression of wide type (Plin5-WT) compared to serine-155 mutant Plin5 (Plin5-S155A). Moreover, PKA-stimulated FA release of purified LDs carrying Plin5-WT but not Plin5-S155A. Glucagon, a PKA activator, stimulated the phosphorylation of Plin5-WT and inhibited its interaction with CGI-58. The results indicated that atorvastatin promoted lipolysis and reduced TG accumulation in the liver by increasing PKA-mediated phosphorylation of Plin5. This new mechanism of lipid-lowering effects of atorvastatin might provide a new strategy for NAFLD treatment.


Atorvastatin/pharmacology , Cyclic AMP-Dependent Protein Kinases/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Lipolysis/drug effects , Liver/metabolism , Muscle Proteins/metabolism , Triglycerides/metabolism , Amino Acid Substitution , Animals , Cyclic AMP-Dependent Protein Kinases/genetics , Dietary Fats/pharmacology , Intracellular Signaling Peptides and Proteins/genetics , Lipolysis/genetics , Liver/pathology , Male , Mice , Mice, Knockout , Muscle Proteins/genetics , Mutation, Missense , Non-alcoholic Fatty Liver Disease/drug therapy , Non-alcoholic Fatty Liver Disease/metabolism , Non-alcoholic Fatty Liver Disease/pathology , Phosphorylation/drug effects , Phosphorylation/genetics , Triglycerides/genetics
19.
Methods Mol Biol ; 1587: 205-214, 2017.
Article En | MEDLINE | ID: mdl-28324511

Telomere chromatin immunoprecipitation (ChIP) is an experimental method used to determine whether proteins are associated with telomere DNA inside the nuclei of cells and tissues. Telomere-associated proteins are first covalently crosslinked to telomere DNA, and then immunoprecipitated using an antibody specific for the protein of interest. This method has become one of the most indispensable tools for investigating the protein complexes that associate with telomeres.


Chromatin/genetics , Telomere/genetics , Chromatin Immunoprecipitation/methods , DNA/genetics , DNA-Binding Proteins/genetics , Humans , Protein Binding/genetics
20.
Nucleic Acids Res ; 45(8): 4281-4293, 2017 05 05.
Article En | MEDLINE | ID: mdl-28334750

To prevent progressive telomere shortening as a result of conventional DNA replication, new telomeric DNA must be added onto the chromosome end. The de novo DNA synthesis involves elongation of the G-rich strand of the telomere by telomerase. In human cells, the CST complex (CTC1-STN1-TEN1) also functions in telomere replication. CST first aids in duplication of the telomeric dsDNA. Then after telomerase has extended the G-rich strand, CST facilitates fill-in synthesis of the complementary C-strand. Here, we analyze telomere structure after disruption of human CTC1 and demonstrate that functional CST is essential for telomere length maintenance due to its role in mediating C-strand fill-in. Removal of CTC1 results in elongation of the 3΄ overhang on the G-rich strand. This leads to accumulation of RPA and telomeric DNA damage signaling. G-overhang length increases with time after CTC1 disruption and at early times net G-strand growth is apparent, indicating telomerase-mediated G-strand extension. In contrast, C-strand length decreases continuously, indicating a deficiency in C-strand fill-in synthesis. The lack of C-strand maintenance leads to gradual shortening of the telomeric dsDNA, similar to that observed in cells lacking telomerase. Thus, telomerase-mediated G-strand extension and CST-mediated C-strand fill-in are equally important for telomere length maintenance.


DNA/chemistry , Telomerase/genetics , Telomere Homeostasis , Telomere-Binding Proteins/genetics , Telomere/metabolism , DNA/genetics , DNA/metabolism , DNA Damage , DNA Polymerase I/genetics , DNA Polymerase I/metabolism , DNA Replication , Gene Deletion , Gene Expression Regulation , HCT116 Cells , HEK293 Cells , Humans , Telomerase/metabolism , Telomere/ultrastructure , Telomere Shortening , Telomere-Binding Proteins/deficiency , Telomere-Binding Proteins/metabolism
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