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1.
J Proteome Res ; 13(2): 1002-11, 2014 Feb 07.
Article En | MEDLINE | ID: mdl-24405156

The prevalence of head and neck squamous cell carcinoma (HNSCC) related to human papillomavirus (HPV) is increasing, unlike tobacco- and alcohol-associated cancers. To gain a clearer understanding of the molecular mechanisms implicated in HNSCC, depending on the presence or not of a viral sequence, we investigated the expression of proteins detected in the tumor regions of HNSCC patients. Twenty-two untreated HNSCC patients were selected according to the presence of HPV-16. For six patients, tumor and controlateral healthy tissues were tested for viral detection before quantitative proteomic analysis. After confirmation by Western blot, proteins were connected into a network, leading to investigate interleukin-6 (IL-6) by immunocytochemistry and ELISA. 41 ± 5% of proteins quantified by proteomics were differentially expressed in tumor compared with healthy regions. Among them, 36 proteins were retained as modulated in HPV-16 positive or negative tumors, including cytokeratins, tubulins, annexin A1, and serpin B1. Network analysis suggested a central role of IL-6, confirmed by overexpression of IL-6 in tumor tissues as in sera of HPV-negative HNSCC compared with HPV-16-positive tumors. This modulation may contribute to the survival and proliferation of cancer cells, although it was not related to tumor stage or to the level of HPV-16 DNA.


Carcinoma, Squamous Cell/metabolism , Head and Neck Neoplasms/metabolism , Interleukin-6/metabolism , Papillomavirus Infections/metabolism , Aged , Base Sequence , Blotting, Western , Carcinoma, Squamous Cell/complications , Carcinoma, Squamous Cell/virology , Case-Control Studies , Cohort Studies , DNA Primers , Enzyme-Linked Immunosorbent Assay , Female , Head and Neck Neoplasms/complications , Head and Neck Neoplasms/virology , Human papillomavirus 16/isolation & purification , Humans , Male , Middle Aged , Papillomavirus Infections/complications , Papillomavirus Infections/virology , Real-Time Polymerase Chain Reaction , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Viral Load
2.
J Autoimmun ; 52: 29-35, 2014 Aug.
Article En | MEDLINE | ID: mdl-24440286

Myasthenia gravis (MG) is an autoimmune disease mainly mediated by anti-acetylcholine receptor (AChR) antibodies. In the late onset, a thymoma, tumor of the thymus, is quite frequent. However, the events leading to thymoma and MG are not understood. As thymoma-associated MG (MG-T) patients also display anti-interferon type I (IFN-I) neutralizing antibodies, we investigated if MG-T could be associated with an anti-viral signature. RT-PCR analyses demonstrated huge increases of IFN-I subtypes, IFN-α2, -α8, -ω and -ß, in thymoma-associated MG but not in thymomas without MG or in control thymuses. Next, we investigated if dsRNA signaling pathway involvement could be observed in MG-T, as recently observed in early-onset MG. We observed an abnormal regulation of dsRNA-sensing molecules with an increase of toll-like receptor 3 (TLR3), and a decrease of protein kinase R (PKR) and dsRNA helicases (RIG-I and MDA5) in thymoma from MG patients. We also detected a decreased expression of p53, the tumor suppressor that is known to be down-regulated by dsRNA. Altogether, these results strongly suggest that MG-T could be linked to a viral infection. As p16 (CDKN2A), a marker of HPV infections, was up-regulated in MG-T, we thus screened DNA from thymomas for human papillomavirus (HPV) by real-time PCR using HPV consensus SPF10 primers. RT-PCR results were negative for all samples tested. We confirmed the absence of HPV DNA detection by end point PCR using FAP primers to amplify a larger panel of HPV genotypes. Our data clearly demonstrate INF-I overexpression together with the activation of innate immunity pathways in thymoma-associated MG suggesting that MG might develop after a pathogen infection. We were not able to relate thymoma to HPV infections and the implication of other pathogens is discussed.


Alphapapillomavirus/immunology , Cyclin-Dependent Kinase Inhibitor p16/metabolism , Interferon Type I/metabolism , Myasthenia Gravis/immunology , Papillomavirus Infections/immunology , Thymoma/immunology , Thymus Neoplasms/immunology , Adult , Aged , Alphapapillomavirus/genetics , Antibodies, Viral/metabolism , Autoantibodies/metabolism , Cells, Cultured , Child, Preschool , Cyclin-Dependent Kinase Inhibitor p16/genetics , DNA, Viral/analysis , Female , Gene Expression Regulation , Humans , Immunity, Innate , Infant , Infant, Newborn , Interferon Type I/genetics , Interferon Type I/immunology , Male , Middle Aged , Myasthenia Gravis/etiology , Myasthenia Gravis/genetics , Papillomavirus Infections/complications , Papillomavirus Infections/genetics , Receptors, Cholinergic/immunology , Thymoma/etiology , Thymoma/genetics , Thymus Neoplasms/etiology , Thymus Neoplasms/genetics , Young Adult
3.
J Clin Virol ; 56(3): 244-9, 2013 Mar.
Article En | MEDLINE | ID: mdl-23182775

BACKGROUND: Diagnosis of human papillomavirus (HPV) disease remains a challenge due to several factors related to the cost, the workload of available commercial assays to detect and genotype HPV, and to the low prevalence of infected patients. OBJECTIVE: Our study aimed to develop a real-time PCR, based on SPF10 primers, in order to combine HPV-DNA detection and genotype identification avoiding the negative samples. STUDY DESIGN: Validation of SYBR-green based SPF10 real-time PCR on HPV-DNA plasmids followed by the investigation of the viral status in 92 samples from oropharyngeal (94%) cutaneous biopsies (3%) and anal smears (3%) which had previously been HPV-genotyped by LiPA hybridization. In-house HPV viral loads were performed to evaluate the SPF10 real-time PCR sensitivity. RESULTS: Data showed that 100% of HPV plasmids, assessable by LiPA hybridization, were detected and genotyped appropriately after SPF10 real-time PCR assays. These results defined a range of melting temperature peaks for HPV positivity by real-time PCR. The efficient determination of the presence of HPV-DNA by SPF10 real-time PCR was validated for 98% of clinical samples compared to commercial method. Discordant results were due to a low HPV-DNA amount and to a supplementary HPV genotype identified. The SPF10 real-time PCR sensitivity was evaluated between 1 and 10 copies/10(3)cells using in-house HPV (6, 11 and 16) viral load assays. CONCLUSION: The real-time PCR method was efficient in combining screening and genotyping of HPV-DNA. Cost and workload reduction by SPF10 real-time PCR approach may facilitate earlier diagnosis and clinical management of HPV infected patients.


Molecular Diagnostic Techniques/methods , Papillomaviridae/classification , Papillomaviridae/isolation & purification , Papillomavirus Infections/diagnosis , Papillomavirus Infections/virology , Real-Time Polymerase Chain Reaction/methods , Virology/methods , Anal Canal/virology , Benzothiazoles , Costs and Cost Analysis , DNA Primers/genetics , Diamines , Genotype , Humans , Molecular Diagnostic Techniques/economics , Oligonucleotide Probes/genetics , Organic Chemicals/metabolism , Oropharynx/virology , Quinolines , Real-Time Polymerase Chain Reaction/economics , Sensitivity and Specificity , Skin/virology , Staining and Labeling/methods , Virology/economics
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