Positive species interactions structure rhodolith bed communities at a global scale.

Rhodolith beds are diverse and globally distributed habitats. Nonetheless, the role of rhodoliths in structuring the associated species community through a hierarchy of positive interactions is yet to be recognised. In this review, we provide evidence that rhodoliths can function as foundation species of multi-level facilitation cascades and, hence, are fundamental for the persistence of hierarchically structured communities within coastal oceans. Rhodoliths generate facilitation cascades by buffering physical stress, reducing consumer pressure and enhancing resource availability. Due to large variations in their shape, size and density, a single rhodolith bed can support multiple taxonomically distant and architecturally distinct habitat-forming species, such as primary producers, sponges or bivalves, thus encompassing a broad range of functional traits and providing a wealth of secondary microhabitat and food resources. In addition, rhodoliths are often mobile, and thus can redistribute associated species, potentially expanding the distribution of species with short-distance dispersal abilities. Key knowledge gaps we have identified include: the experimental assessment of the role of rhodoliths as basal facilitators; the length and temporal stability of facilitation cascades; variations in species interactions within cascades across environmental gradients; and the role of rhodolith beds as climate refugia. Addressing these research priorities will allow the development of evidence-based policy decisions and elevate rhodolith beds within marine conservation strategies.

Proxies to detect hotspots of invertebrate biodiversity on rhodolith beds across the Southwestern Atlantic.

Rhodolith beds are known worldwide to host high biodiversity to several taxa. Despite their importance, few ecological data explored the influence of rhodolith features and environmental variables on associated biodiversity, a gap that has been hampering the mapping of diversity hotspots and priority areas for conservation. In this study, we investigated large-scale spatial variations of rhodolith beds and their associated fauna, using annelid polychaetes as a biological model. We aimed to identify proxies, based on rhodolith features and environmental variables, to detect biodiversity hotspots across Southwestern Atlantic beds, laying the groundwork for mapping priority areas for conservation. With this goal, we sampled a total of 136 rhodolith nodules across seven sites with beds under distinct latitudes, depths, distances from the mainland coast of Brazil, and rhodolith densities. For each nodule sampled, we measured the volume, diameter, and mass of sediment trapped, as well as the attributes of the associated polychaetes (abundance, richness, diversity, and composition). Our results revealed a complex network of collinearities and synergisms between the rhodolith features and the majority of the polychaetes attributes (i.e., abundance, diversity, and composition). Polychaete richness, in contrast, can be explained by the combination of two proxies: (1) rhodolith nodule diameter and (2) distance of the rhodolith bed from the mainland coast. Nearshore rhodolith beds and larger nodules were associated with higher values of richness. Additionally, rhodoliths with a hollow morphology were also associated with higher values of polychaete richness. These results suggest that nearshore rhodolith beds with large and hollow nodules could be priority areas for conservation. However, further multi-taxa studies using our framework are still needed to explore other regions and scales, delineating more comprehensive proxies for predicting ecological patterns of the rhodoliths associated fauna and to identify priorities for conservation across Southwestern Atlantic beds.

Opportunistic sightings of manta rays on Brazil's Amazon Coast.

Little is known about the ecology and distribution of mobulid rays along Brazil's extensive coastline. Here we report opportunistic sightings of manta rays (Mobula cf. birostris) in the Brazilian Amazon estuaries and the Great Amazon Reef System. These sightings consist of manta ray individuals stranded in tide pools, caught in artisanal fisheries, and footage obtained with a submersible. Future investigations on the spatial, temporal, and environmental drivers of manta rays' distribution on the northern Brazilian coast and the threats posed by fishing gear are warranted.

Plastic pollution on the world's coral reefs.

Coral reefs are losing the capacity to sustain their biological functions1. In addition to other well-known stressors, such as climatic change and overfishing1, plastic pollution is an emerging threat to coral reefs, spreading throughout reef food webs2, and increasing disease transmission and structural damage to reef organisms3. Although recognized as a global concern4, the distribution and quantity of plastics trapped in the world's coral reefs remains uncertain3. Here we survey 84 shallow and deep coral ecosystems at 25 locations across the Pacific, Atlantic and Indian ocean basins for anthropogenic macrodebris (pollution by human-generated objects larger than 5 centimetres, including plastics), performing 1,231 transects. Our results show anthropogenic debris in 77 out of the 84 reefs surveyed, including in some of Earth's most remote and near-pristine reefs, such as in uninhabited central Pacific atolls. Macroplastics represent 88% of the anthropogenic debris, and, like other debris types, peak in deeper reefs (mesophotic zones at 30-150 metres depth), with fishing activities as the main source of plastics in most areas. These findings contrast with the global pattern observed in other nearshore marine ecosystems, where macroplastic densities decrease with depth and are dominated by consumer items5. As the world moves towards a global treaty to tackle plastic pollution6, understanding its distribution and drivers provides key information to help to design the strategies needed to address this ubiquitous threat.

Levelling-up rhodolith-bed science to address global-scale conservation challenges.

Global marine conservation remains fractured by an imbalance in research efforts and policy actions, limiting progression towards sustainability. Rhodolith beds represent a prime example, as they have ecological importance on a global scale, provide a wealth of ecosystem functions and services, including biodiversity provision and potential climate change mitigation, but remain disproportionately understudied, compared to other coastal ecosystems (tropical coral reefs, kelp forests, mangroves, seagrasses). Although rhodolith beds have gained some recognition, as important and sensitive habitats at national/regional levels during the last decade, there is still a notable lack of information and, consequently, specific conservation efforts. We argue that the lack of information about these habitats, and the significant ecosystem services they provide, is hindering the development of effective conservation measures and limiting wider marine conservation success. This is becoming a pressing issue, considering the multiple severe pressures and threats these habitats are exposed to (e.g., pollution, fishing activities, climate change), which may lead to an erosion of their ecological function and ecosystem services. By synthesizing the current knowledge, we provide arguments to highlight the importance and urgency of levelling-up research efforts focused on rhodolith beds, combating rhodolith bed degradation and avoiding the loss of associated biodiversity, thus ensuring the sustainability of future conservation programs.

Spawning ecology of the Saint Paul's Gregory Stegastes sanctipauli, a damselfish endemic to the remote St Peter and St Paul's Archipelago.

We studied the spawning ecology of Stegastes sanctipauli, a damselfish endemic to the small and remote St Peter and St Paul's Archipelago (Brazil), aiming to determine the main correlates of reproductive success, as inferred from rates of egg losses along a spawning season. New clutches appeared mostly in the last quarter moon, when egg predation intensified. Predation by heterospecifics, particularly Halichoeres radiatus (Linnaeus, 1758), accounted for most egg losses, while filial cannibalism showed negligible influence. Predation pressure was highest for larger nests with higher initial density of eggs. Hatching of eggs occurred close to the new moon (i.e., ~5 days after spawning). Most nests occur in shallow reefs (<16 m depth), where main food resources for adults (turf algae) are concentrated, but abundance of egg predators, particularly H. radiatus, is also highest. This latter result suggests that the spawning activity of S. sanctipauli is influenced by the trade-offs between food accessibility by adults and egg predation risk. The patterns recorded here are similar to those known for other tropical damselfish species and may reflect strategies for attenuating predation pressure over new fry and eggs.

Habitat use of five sympatric predatory reef fishes at a remote island in the south-western Atlantic.

Density-dependent mechanisms and habitat use are important drivers of marine spatial distribution in complex ecosystems such as coral or rocky reefs. In the last decade, a few studies have assessed habitat use by reef fishes in nearshore and coastal environments along the Brazilian coast. Serranidae (groupers and sea basses) are regarded as excellent models for understanding habitat use patterns due to their diversity, long lifespan, wide distribution, morphological and functional diversity, and behavioural complexity. Their trophic position in the food web, from meso- to top-predators, grants them critical roles as top-down population controllers. Herein, we present the first assessment of habitat use by five sympatric Serranidae in a Brazilian oceanic island, Trindade. The model species selected for this assessment were the coney (Cephalopholis fulva), the rock hind (Epinephelus adscensionis), the greater soapfish (Rypticus saponaceus), the Creole-fish (Paranthias furcifer) and the hybrid between C. fulva and P. furcifer. Our findings revealed that the species showed specific associations with topographic characteristics related to shelter from predation, reproduction and feeding. Habitat use in Trindade was similar to that observed in nearshore coastal environments (where the hybrid is absent). The present work contributes to the knowledge of habitat use and niche partitioning among key species, which is a valuable tool to subsidize effective conservation initiatives such as designing marine protected areas focusing on the behaviour and habitat use of key ecological players.

Machine learning sheds light on physical-chemical and biological parameters leading to Abrolhos coral reef microbialization.

Microbes play a central role in coral reef health. However, the relative importance of physical-chemical and biological processes in the control of microbial biomass are unknown. Here, we applied machine learning to analyze a large dataset of biological, physical, and chemical parameters (N = 665 coral reef seawater samples) to understand the factors that modulate microbial abundance in the water of Abrolhos reefs, the largest and richest coral reefs of the Southwest Atlantic. Random Forest (RF) and Boosted Regression Tree (BRT) models indicated that hydrodynamic forcing, Dissolved Organic Carbon (DOC), and Total Nitrogen (TN) were the most important predictors of microbial abundance. The possible cumulative effects of higher temperatures, longer seawater residence time, higher nutrient concentration, and lower coral and fish biomass observed in coastal reefs resulted in higher microbial abundance, potentially impacting coral resilience against stressors.

Turbidity shapes shallow Southwestern Atlantic benthic reef communities.

Southwestern Atlantic reefs (Brazilian Province) occur along a broad latitudinal range (∼5°N-27°S) and under varied environmental conditions. We combined large-scale benthic cover and environmental data into uni- and multivariate regression tree analyses to identify unique shallow (<30 m) benthic reef communities and their environmental drivers along the Brazilian Province. Turbidity was the leading environmental driver of benthic reef communities, with the occurrence of two main groups: clear-water (dominated by fleshy macroalgae) and turbid (dominated by turf algae). Seven out of 14 scleractinian coral species were more abundant in the turbid group, thus corroborating the photophobic nature of some Brazilian corals. The most abundant scleractinian in Brazil (Montastraea cavernosa), largely dominated (71-93% of total coral cover) both, the shallow turbid and deeper clear-water reefs. Because these habitat types are widely recognized as potential climate refuges, local threats (e.g. pollution, overfishing) should be averted.

Neospongodes atlantica, a potential case of an early biological introduction in the Southwestern Atlantic.

Soft corals (Anthozoa: Octocorallia) are discreet components in the Southwestern Atlantic reef communities. In Brazil, the native octocoral shallow-reef fauna is mostly represented by gorgonians. Consequently, except for the nephtheid Neospongodes atlantica, most of the known soft corals from this region are considered non-indigenous. Hitherto, the monotypic genus Neospongodes, which was proposed in the early 1900s, has been considered to be endemic to the Northeastern Brazilian coast. Herein, based on in situ records, we show that N. atlantica is a substrate generalist that has been probably expanding its distribution by dominating extensive shallow and mesophotic sandy and reef bottoms, generally outcompeting other reef benthic organisms, including Brazilian endemic species. Based on previously unidentified museum specimens, new records, and a broad literature review, we provide the most comprehensive modelling of the potential distribution of this species in the Southwestern Atlantic. Based on molecular inference supported by in-depth morphological analysis, the probable non-indigenous and, therefore, ancient introduction of N. atlantica in Brazilian waters is discussed. Finally, these results support that Neospongodes and the Indo-Pacific Stereonephthya are synonyms, which led us to propose the latter as taxonomically invalid.

Low functional vulnerability of fish assemblages to coral loss in Southwestern Atlantic marginal reefs.

Marginal reefs sustain coral assemblages under conditions considered suboptimal for most corals, resulting in low coral abundance. These reefs are inhabited by numerous fishes with a generally unknown degree of association with corals that might lead to the assumption that corals play minor roles in determining fish occurrence, when corals could be actually sustaining diverse and resilient assemblages. Using site-occupancy models fitted to data of 113 reef fish species of different life stages (adults and juveniles) from 36 reefs distributed across the Southwestern Atlantic (0.87-27.6°S) we first assessed fish assemblage's response to coral and turf algal cover, and identified coral-associated fish. Then, we simulated the loss of coral-associated fishes and contrasted it with random losses, providing inferences on the resilience of fish assemblage's functional trait space to species loss. The entire fish assemblage responded more positively to coral than to turf algae, with 42 (37%) species being identified as coral-associated fish. The simulated loss of coral-associated fish reduced up to 5% the functional trait space and was not different from the random loss. These results reveal that marginal reefs of Southwestern Atlantic reefs host resilient fish assemblages that might preserve fundamental ecological functions and ecosystem services even with coral declines.

Metals and organic matter baselines in sediments in a cross-shelf gradient at Abrolhos Bank, SW Atlantic.

The present study performed geochemical fractioning of major and minor elements in a cross-shelf gradient of the Abrolhos Bank, where the largest and most diverse coral reefs in the South Atlantic are concentrated. The fractioning was performed using sequential extractions to determine the degree of availability and toxicity of the elements. The mobility pattern of the elements investigated were in the following order: Ca > Mn > Pb > Cr > Zn > Fe > V > Cu > Ba>Al > Ni > Ti. For elements, such as (Ti, Ni, Al, Ba, Cu, V, Fe, Zn, Cr, Pb), the highest concentrations were in the residual phase at some sampling sites. As established by Environment Canada (Threshold Effect Level - TEL and Probable Effect Level - PEL), Ba, Cr, and Ni produced values higher than the limits, associated with higher concentrations of other elements. In addition, significant proportions of these elements were found in mobile phases in the same sites. Thus, more rigorous measures are critical to avoid alarming levels of chronic environmental pollution inside and outside protected areas of the region. To enhance the sustainability of the region, more effective enforcement is crucial to prevent anthropic contamination that may threaten its biodiversity. The results provide the baseline for future studies regarding the potential impacts of the breach of the tailings dam in the region of Mariana, Minas Gerais.

Breviolum and Cladocopium Are Dominant Among Symbiodiniaceae of the Coral Holobiont Madracis decactis.

The scleractinian reef building coral Madracis decactis is a cosmopolitan species. Understanding host-symbiont associations is critical for assessing coral's habitat requirements and its response to environmental changes. In this study, we performed a fine grained phylogenetic analyses of Symbiodiniaceae associated with Madracis in two locations in the Southwest Atlantic Ocean (Abrolhos Bank and St. Peter and St. Paul Archipelago). Previous studies have argued that Madracis is a specialist coral, with colonies harboring a single symbiont from the genus Breviolum (formerly clade B). However, these previous studies have not precisely addressed if Madracis is colonized by several types of Symbiodiniaceae simultaneously or whether this coral is a specialist. The hypothesis that Madracis is a generalist coral host was evaluated in the present study. A total of 1.9 million reads of ITS2 nuclear ribosomal DNA were obtained by Illumina MiSeq sequencing. While Symbiodiniaceae ITS2 sequences between two sampling depths were almost entirely (62%) from the genus Breviolum (formerly clade B), shallow (10-15 m) populations in Abrolhos had a greater diversity of ITS2 sequences in comparison to deeper (25-35 m) populations of St. Peter and St. Paul Archipelago. Cladocopium (formerly clade C) and Symbiodinium (formerly clade A) were also found in Abrolhos. A single Madracis colony can host different symbiont types with > 30 Symbiodiniaceae ITS2-type profiles. Abrolhos corals presented a higher photosynthetic potential as a possible result of co-occurrence of multiple Symbiodiniaceae in a single coral colony. Multiple genera/clades of Symbiodiniaceae possibly confer coral hosts with broader environmental tolerance and ability to occupy diverse or changing habitats.

Protecting nursery areas without fisheries management is not enough to conserve the most endangered parrotfish of the Atlantic Ocean.

Marine protected areas (MPAs) are a primary strategy for marine conservation worldwide, having as a common goal the protection of essential habitats to enhance fish population recovery. However, MPAs alone may not be effective because species are not isolated from critical impacts occurring outside their boundaries. We evaluated how protecting critical nursery habitats affect the population of an important fishing target, using a 6-year database to predict juvenile hotspots and estimate population trends of the endemic and endangered parrotfish Scarus trispinosus within a mosaic of MPAs at the Abrolhos Bank, NE Brazil. We found that important nursery habitats are within no-take areas, but both juvenile and adult populations still show a declining trend over time. MPAs failed to ensure population maintenance and recovery likely due to overfishing in adjacent areas and the lack of compliance to management rules within multiple-use and within no-take MPAs. MPAs alone are not enough to protect ecologically important endangered species, but is still one of the only conservation strategies, particularly in developing countries. Our results shed light on the need for a wider adoption of more effective conservation policies in addition to MPAs, both in Brazil and in countries with similar governance contexts.

Fish biodiversity of Saint Peter and Saint Paul's Archipelago, Mid-Atlantic Ridge, Brazil: new records and a species database.

Saint Peter and Saint Paul's Archipelago (SPSPA), one of the smallest and most isolated island groups in the world, is situated on the Mid-Atlantic Ridge, between Brazil and the African continent. SPSPA has low species richness and high endemism; nonetheless, the diversity of fishes from deep habitats (>30 m depth) had not been previously studied in detail. Several expeditions conducted between 2009 and 2018 explored the shallow and deep reefs of SPSPA using scuba, closed-circuit rebreathers, manned submersibles, baited remote underwater stereo-videos (stereo-BRUV) and fishing between 0 and 1050 m depth. These expeditions yielded 41 new records of fishes for SPSPA: 9 in open waters, 9 in shallow waters (0-30 m), 8 in mesophotic ecosystems (30-150 m) and 15 in deeper reefs (>150 m). Combined with literature records of adult pelagic, shallow and deep-reef species, as well as larvae, the database of the fish biodiversity for SPSPA currently comprises 225 species (169 recorded as adult fishes and 79 as larvae, with 23 species found in both stages). Most of them (112) are pelagic, 86 are reef-associated species and 27 are deep-water specialists. Species accumulation curves show that the number of fish species has not yet reached an asymptote. Whereas the number of species recorded in SPSPA is similar to that in other oceanic islands in the Atlantic Ocean, the proportion of shorefishes is relatively lower, and the endemism level is the third highest in the Atlantic. Twenty-nine species are listed as threatened with extinction. Observations confirm the paucity of top predators on shallow rocky reefs of the island, despite the presence of several pelagic shark species around SPSPA. Because all of the endemic species are reef associated, it is argued that the new marine-protected areas created by the Brazilian government do not ensure the protection and recovery of SPSPA's biodiversity because they allow exploitation of the most vulnerable species around the archipelago itself. This study suggests a ban on reef fish exploitation inside an area delimited by the 1000 m isobath around the islands (where all known endemics are concentrated) as the main conservation strategy to be included in the SPSPA management plan being prepared by the Brazilian government.

Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes.

BACKGROUND: Bacteriophages encode genes that modify bacterial functions during infection. The acquisition of phage-encoded virulence genes is a major mechanism for the rise of bacterial pathogens. In coral reefs, high bacterial density and lysogeny has been proposed to exacerbate reef decline through the transfer of phage-encoded virulence genes. However, the functions and distribution of these genes in phage virions on the reef remain unknown. RESULTS: Here, over 28,000 assembled viral genomes from the free viral community in Atlantic and Pacific Ocean coral reefs were queried against a curated database of virulence genes. The diversity of virulence genes encoded in the viral genomes was tested for relationships with host taxonomy and bacterial density in the environment. These analyses showed that bacterial density predicted the profile of virulence genes encoded by phages. The Shannon diversity of virulence-encoding phages was negatively related with bacterial density, leading to dominance of fewer genes at high bacterial abundances. A statistical learning analysis showed that reefs with high microbial density were enriched in viruses encoding genes enabling bacterial recognition and invasion of metazoan epithelium. Over 60% of phages could not have their hosts identified due to limitations of host prediction tools; for those which hosts were identified, host taxonomy was not an indicator of the presence of virulence genes. CONCLUSIONS: This study described bacterial virulence factors encoded in the genomes of bacteriophages at the community level. The results showed that the increase in microbial densities that occurs during coral reef degradation is associated with a change in the genomic repertoire of bacteriophages, specifically in the diversity and distribution of bacterial virulence genes. This suggests that phages are implicated in the rise of pathogens in disturbed marine ecosystems.

Mesophotic ecosystems at Fernando de Noronha Archipelago, Brazil (South-western Atlantic), reveal unique ichthyofauna and need for conservation

Abstract Although several studies on the ichthyofauna of the Fernando de Noronha Archipelago have been carried out, its mesophotic fish diversity has never been surveyed before. Here we used SCUBA and technical rebreather diving, baited remote underwater videos and remotely operated vehicle to record shallow (≤ 30 m depth) and mesophotic (31 to 150 m depth) fishes. Nineteen fish species belonging to 14 families are reported here as new records, representing an increase of 8.2% in marine fish richness for the region, which now has a total of 250 species and 77 families. These new records include four potential new species and highlight the importance of surveying mesophotic ecosystems, even in well studied sites. Our results also emphasize the need for protection and attention to the unique ichthyofauna found at mesophotic depths.(AU)

Resumo Apesar de muitos estudos sobre a ictiofauna do Arquipélago de Fernando de Noronha terem sido realizados, sua diversidade de peixes mesofóticos nunca foi estudada antes. Neste estudo utilizamos mergulho autônomo e mergulho técnico, vídeos subaquáticos remotos com isca e veículo operado remotamente para registrar peixes de ecossistemas rasos (≤ 30 m de profundidade) e mesofóticos (31 a 150 m de profundidade). Dezenove espécies de peixes pertencentes a 14 famílias são apresentadas aqui como novos registros, representando um aumento de 8,2% na riqueza de peixes marinhos da região, que agora possui um total de 250 espécies e 77 famílias. Esses novos registros incluem quatro prováveis novas espécies e reforçam a importância de estudos em ecossistemas mesofóticos. Nossos resultados também enfatizam a necessidade de proteção e atenção à essa ictiofauna única encontrada nesses ecossistemas profundos.(AU)

Insights on the evolution of the living Great Amazon Reef System, equatorial West Atlantic.

The Great Amazon Reef (GARS) is an extensive mesophotic reef ecosystem between Brazil and the Caribbean. Despite being considered as one of the most important mesophotic reef ecosystems of the South Atlantic, recent criticism on the existence of a living reef in the Amazon River mouth was raised by some scientists and politicians. The region is coveted for large-scale projects for oil and gas exploration. Here, we add to the increasing knowledge about the GARS by exploring evolutionary aspects of the reef using primary and secondary information on radiocarbon dating from carbonate samples. The results obtained demonstrate that the reef is alive and growing, with living organisms inhabiting the GARS in its totality. Additional studies on net reef growth, habitat diversity, and associated biodiversity are urgently needed to help reconcile economic activities and biodiversity conservation.