The program FlÉX (flexural É for xtals) has been developed for a quick, easy and accurate evaluation of the maximum deformation reached in flexible crystals from a simple optical microscope picture. The program takes advantage of computer vision libraries to find the contours of a bent crystal and fit these to semicircles. It can then calculate the theoretical maximum deformation along its long axis using equations from the Euler-Bernoulli beam theory.
We report thermochromism in crystals of diphenyl diselenide (dpdSe) and diphenyl ditelluride (dpdTe), which is at variance with the commonly known mechanisms of thermochromism in molecular crystals. Variable temperature neutron diffraction studies indicated no conformational change, tautomerization or phase transition between 100â K and 295â K. High-pressure crystallography studies indicated no associated piezochromism in dpdSe and dpdTe crystals. The evolution of the crystal structures and their electronic band structure with pressure and temperature reveal the contributions of intramolecular and intermolecular factors towards the origin of thermochromism-especially the intermolecular Seâ â â Se and Teâ â â Te chalcogen bonds and torsional modes of vibrations around the dynamic Se-Se and Te-Te bonds. Further, a co-crystal of dpdSe with iodine (dpdSe-I2 ) and an alloy crystal of dpdSe and dpdTe implied a predominantly intramolecular origin of the observed thermochromism associated with vibronic coupling.
This paper describes the syntheses of several functionalized dihydropyrene (DHP) molecular switches with different substitution patterns. Regioselective nucleophilic alkylation of a 5-substituted dimethyl isophthalate allowed the development of a workable synthetic protocol for the preparation of 2,7-alkyne-functionalized DHPs. Synthesis of DHPs with surface-anchoring groups in the 2,7- and 4,9-positions is described. The molecular structures of several intermediates and DHPs were elucidated by X-ray single-crystal diffraction. Molecular properties and switching capabilities of both types of DHPs were assessed by light irradiation experiments, spectroelectrochemistry, and cyclic voltammetry. Spectroelectrochemistry, in combination with density functional theory (DFT) calculations, shows reversible electrochemical switching from the DHP forms to the cyclophanediene (CPD) forms. Charge-transport behavior was assessed in single-molecule scanning tunneling microscope (STM) break junctions, combined with density functional theory-based quantum transport calculations. All DHPs with surface-contacting groups form stable molecular junctions. Experiments show that the molecular conductance depends on the substitution pattern of the DHP motif. The conductance was found to decrease with increasing applied bias.
This review presents a critical and comprehensive overview of current experimental measurements of complete elastic constant tensors for molecular crystals. For a large fraction of these molecular crystals, detailed comparisons are made with elastic tensors obtained using the corrected small basis set Hartree-Fock method S-HF-3c, and these are shown to be competitive with many of those obtained from more sophisticated density functional theory plus dispersion (DFT-D) approaches. These detailed comparisons between S-HF-3c, experimental and DFT-D computed tensors make use of a novel rotation-invariant spherical harmonic description of the Young's modulus, and identify outliers among sets of independent experimental results. The result is a curated database of experimental elastic tensors for molecular crystals, which we hope will stimulate more extensive use of elastic tensor information-experimental and computational-in studies aimed at correlating mechanical properties of molecular crystals with their underlying crystal structure.
A re-refinement of the published but chemically implausible, crystal structure of "Form III" of 4-bromophenyl 4-bromobenzoate shows that it is not a polymorph, but instead a co-crystal containing both 4-bromophenyl 4-bromobenzoate (≈25%) and likely 4-bromophenyl 4-nitrobenzoate (≈75%).
Hydrophobic interactions are often explored in solution-state aggregation of molecules. However, an experimental electron density description about these interactions is still lacking. Here, we report a systematic study on the electronic nature of methyl···methyl hydrophobic interactions in a series of multicomponent crystals of biologically active molecules. Charge density models based on high-resolution X-ray diffraction allow the visualization of subtle details of electron density features in the interaction region. Our study classifies these interactions as atypical group···group interactions in contrast to σ-hole interactions, which are stabilized by the minimized electrostatic repulsion and maximized dispersion forces. For the first time, we quantified the solid-state entropic contribution from the torsional mode of the methyl groups in stabilizing these interactions by thermal motion analysis based on neutron diffraction as well as variable-temperature crystallography. The carbon atoms in methyl···methyl interactions show a unique upfield chemical shift in the 13C solid-state NMR signal.
The observation of an unusual crystal habit in the common diuretic drug hydrochlorothiazide (HCT), and identification of its subtle conformational chirality, has stimulated a detailed investigation of its crystalline forms. Enantiomeric conformers of HCT resolve into an unusual structure of conjoined enantiomorphic twin crystals comprising enantiopure domains of opposite chirality. The purity of the domains and the chiral molecular conformation are confirmed by spatially revolved synchrotron micro-XRD experiments and neutron diffraction, respectively. Macroscopic inversion twin symmetry observed between the crystal wings suggests a pseudoracemic structure that is not a solid solution or a layered crystal structure, but an unusual structural variant of conglomerates and racemic twins. Computed interaction energies for molecular pairs in the racemic and enantiopure polymorphs of HCT, and the observation of large opposing unit-cell dipole moments for the enantiopure domains in these twin crystals, suggest a plausible crystal nucleation mechanism for this unusual crystal habit.
Among contemporary semiconductors, many of the best performing materials are based on [1]benzothieno[3,2- b][1]benzothiophene (BTBT). Alkylated derivatives of these small molecules not only provide high hole mobilities but also can be easily processed by thermal vacuum or solution deposition methods. Over the last decade, numerous publications have investigated molecular structures and charge transport properties to elucidate what makes these molecules so special. However, the race toward ever higher mobilities resulted in significantly deviating values, which exacerbates linking molecular structure to electronic properties. Moreover, a recently arisen debate on overestimation of organic field-effect transistor mobilities calls for a revaluation of these numbers. We synthesized and characterized four BTBT derivatives with either one or two alkyl chains (themselves consisting of either 8 or 10 carbon atoms) and investigated their spectroscopic, structural, and electrical properties. By employing two-probe, gated four-point probe and gated van der Pauw measurements, we compare field-effect mobility values at room and low temperatures and discuss their feasibility and viability. We attribute mobility changes to different angles between molecule planes and core-to-core double-layer stacking of asymmetric BTBT derivatives and show higher mobilities in the presence of more and longer alkyl chains. A so-called "zipper effect" brings BTBT cores in closer proximity promoting stronger intermolecular orbital coupling and hence higher charge transport.
The purpose of this work is to study the influence of the substitution of Fe(ii) by Mn(ii) on the spin crossover behaviour of [FexMn1-x(L222N3O2)(CN)2]·H2O solid solutions where L222N3O2 is a macrocyclic ligand = 2,13-dimethyl-6,9-dioxa-3,12,18-triazabicyclo[12.3.1]-octadeca-1(18),2,12,14,16-pentaene. The pure Fe(ii) complex is known to present a change of the coordination number from 7 at high temperature to 6 at low temperature. The target of the solid solution study was to investigate the effect of metal dilution on this coordination change. We have then measured the thermal spin crossover features as well as the metastable HS state lifetime generated by rapid thermal quenching, which was probed through the determination of the T(TIESST) value. A discussion of the spin-state as a function of temperature is given based on the phase diagram of this series and based on the investigation of the crystal structure of the [Mn(L222N3O2)(CN)2]·H2O complex and its comparison with the published [Fe(L222N3O2)(CN)2]·H2O master compound.
The ability to tune physical properties is attractive for the development of new materials for myriad applications. Understanding and controlling the structural dynamics in complicated network structures like coordination polymers (CPs) is particularly challenging. We report a series of two-dimensional CPs [Mn(salen)]2[M(CN)4]· xH2O (M = Pt (1), PtI2 (2), and MnN (3)) incorporating zigzag cyano-network layers that display composition-dependent anisotropic thermal expansion properties. Variable-temperature single-crystal X-ray structural analyses demonstrated that the thermal expansion behavior is caused by double structural distortions involving [Mn(salen)]+ units incorporated into the zigzag layers. Thermal relaxations produce structural transformations resulting in positive thermal expansion for 2·H2O and negative thermal expansion for 3. In the case of 1·H2O, the relaxation does not occur and zero thermal expansion results in the plane between 200 to 380 K. The present study proposes a new strategy based on structural distortions in coordination networks to control thermal responsivities of frameworks.
Elastically flexible crystals form an emerging class of materials that exhibit a range of notable properties. The mechanism of thermal expansion in flexible crystals of bis(acetylacetonato)copper(II) is compared with the mechanism of molecular motion induced by bending and it is demonstrated that the two mechanisms are distinct. Upon bending, individual molecules within the crystal structure reversibly rotate, while thermal expansion results predominantly in an increase in intermolecular separations with only minor changes to molecular orientation through rotation.
The rational, deliberate design of supramolecular architectures is of great importance for the discovery of complex materials. A three-dimensional cubic halogen-bonded network has been prepared by combination of an octahedral metal-containing halogen bond acceptor and a linear ditopic donor. This material displays α-Po pcu topology and is seven-fold interpenetrated. This is the first neutral, metal-containing three-dimensional halogen-bonded network to be reported.
Single crystals are typically brittle, inelastic materials. Such mechanical responses limit their use in practical applications, particularly in flexible electronics and optical devices. Here we describe single crystals of a well-known coordination compound-copper(II) acetylacetonate-that are flexible enough to be reversibly tied into a knot. Mechanical measurements indicate that the crystals exhibit an elasticity similar to that of soft materials such as nylon, and thus display properties normally associated with both hard and soft matter. Using microfocused synchrotron radiation, we mapped the changes in crystal structure that occur on bending, and determined the mechanism that allows this flexibility with atomic precision. We show that, under strain, the molecules in the crystal reversibly rotate, and thus reorganize to allow the mechanical compression and expansion required for elasticity and still maintain the integrity of the crystal structure.
Zero in-plane thermal expansion (TE) in a two-dimensional (2D) coordination polymer is demonstrated. The combination of components that expand and those that shrink into zigzag layers results in no net area change in the 2D materials with temperature. Single crystals of [Mn(salen)]2[Mn(N)(CN)4(guest)] (salen = N,N'-ethylenebis(salicylideneaminato), guest = MeOH and MeCN) were prepared, and variable-temperature single-crystal X-ray structural analyses demonstrated that these compounds exhibited both anisotropic positive and negative thermal expansion depending on the guest species. The TE behavior results from distortions of the octahedral coordination geometry of [Mn(salen)]+ units in the zigzag layers. When both guests MeOH and MeCN were incorporated into one material, [Mn(salen)]2[Mn(N)(CN)4(MeOH)0.25(MeCN)0.75], zero in-plane TE resulted in a range of temperature between 380 and 440 K.
Vibrational spectra of the spin crossover (SCO) polymers [Fe(NH2trz)3](X)2·nH2O where NH2trz = 4-NH2-1,2,4-triazole and X = Cl, Br, BF4, and NO3 have been analyzed. Our results show that the anions and water molecules have no significant influence on the vibrational properties of the Fe(NH2-trz)3 polymer chains. A detailed study of the nitrate derivative, based on the DFT analysis of the polarized spectra of single crystals, has been undertaken to propose the normal mode assignment of the Raman peaks in the low spin state of the compound. Changes in the Raman spectra in the high spin state could therefore be analyzed and interpreted by several Raman bands identified as molecular probes of the SCO phenomenon. Various factors (laser power, humidity, pressure) that influence the transition temperatures and the hysteresis loops have been identified and adjusted for obtaining reliable measurements. We demonstrate in particular that all the techniques used to probe the phase transition process give comparable results providing that the sample environment is well controlled.
The central Sn(IV) atom of the penta-nuclear title complex, {[Sn(CH(3))(3)](3)O(2)C(CH(2))PO(3)[Sn(CH(3))(3)(H(2)O)](2)HO(2)C(CH(2))PO(3)}, is located on a twofold rotation axis; due to symmetry, the H atom of the carboxyl group of the anion is disordered with a site occupancy of 0.5. The central Sn(IV) atom is bonded to three methyl groups (one of which is disordered about the twofold rotation axis) and is symmetrically trans coordinated by two phospho-nate groups with Sn-O = 2.2665â (12)â Å while the other SnMe(3) residues are asymmetrically trans coordinated with Sn-O = 2.1587â (12) and 2.3756â (13)â Å for one residue and Sn-O = 2.1522â (12) and 2.4335â (12)â Å for the other; the Sn-O distances involving two O atoms trans to carboxyl-ate are longer than those trans to phospho-nate groups. The Sn-C distances lie in a very narrow range [2.112â (2)-2.133â (3)â Å]. The oxyanion behaves as a tetra-coordinating ligand. The bridging mode of the latter leads to the formation of layers parallel to (001) that are inter-connected by O-Hâ¯O and C-Hâ¯O hydrogen bonds.
The structure of the title compound, (C(14)H(16)N)(2)[HgCl(2)(SO(4))], consists of an infinite chain propagating along the c direction, containing Hg(II) ions tetra-coordinated by two bridging O atoms of bis-monodentate sulfate anions and two chloride ligands. In the the crystal, N-Hâ¯O hydrogen bonding between the cations and the anionic chains consolidates the packing. The crystal structure was determined from an inversion twin with approximately equal twin domains.
In the title salt, [(CH(3))(2)CH](2)NH(2)](+)·[C(6)H(5)PO(2)(OH)](-), the anions are linked by pairs of O-Hâ¯O hydrogen bonds, forming inversion dimers. These dimers are bridged by the cations via N-Hâ¯O hydrogen bonds, leading to a three-dimensional structure.
The first single crystal-based description of a spin transition compound from the patented [Fe(Rtrz)(3)]X(2)·nH(2)O family is reported, properly the compound with Rtrz = 4-amino-1,2,4-triazole, X = NO(3) and n = 2. This study definitively proves the 1-D polymeric nature of the crystal structure and allows a description of the [Fe(Rtrz)(3)] chains, as well as of the anions and water implementation within the crystal lattice opening the possibility of subsequent investigations of the structure-property correlation within this peculiar family of spin transition compounds.
Ferric Compounds/chemistry , Iron/chemistry , Polymers/chemistry , Coordination Complexes/chemistry , Crystallography, X-Ray , Molecular Conformation
