Curious bivalves: Systematic utility and unusual properties of anomalodesmatan mitochondrial genomes.

Mitogenomic trees for Bivalvia have proved problematic in the past, but several highly divergent lineages were missing from these analyses and increased representation of these groups may yet improve resolution. Here, we add seven new sequences from the Anomalodesmata and one unidentified semelid species (Bryopa lata, Euciroa cf. queenslandica, Laternula elliptica, Laternula truncata, Lyonsia norwegica, Myadora brevis, Tropidomya abbreviata, "Abra" sp.). We show that relationships in a mitogenomic tree for the Class are improved by the addition of seven anomalodesmatans from this highly divergent clade, but are still not completely consistent with relationships recovered in studies of nuclear genes. We suggest that some anomalous relationships (for instance the non-monophyly of Bivalvia) may be partially explained by compositional heterogeneity in the mitogenome and suggest that the addition of more taxa may help resolve both this effect and possible instances of long branch attraction. We also identify several curious features about anomalodesmatan mitogenomes. For example, many protein-coding gene boundaries are poorly defined in marine bivalves, but particularly so in anomalodesmatans, primarily due to non-conserved boundary sequences. The use of transcriptomic and genomic data together enabled better definition of gene boundaries, the identification of possible pseudogenes and suggests that most genes are translated monocistronically, which contrasts with many other studies. We also identified a possible case of gene duplication of ND5 in Myadora brevis (Myochamidae). Mitogenome size in the Anomalodesmata ranges from very small compact molecules, with the smallest for Laternula elliptica (Laternulidae) only 14,622bp, to Bryopa lata (Clavagellidae) which is at least 31,969bp long and may be >40,000bp. Finally, sampled species show a high degree of sequence divergence and variable gene order, although intraspecific variation in Laternula elliptica is very low.

Metal Dissipation and Inefficient Recycling Intensify Climate Forcing.

In the metals industry, recycling is commonly included among the most viable options for climate change mitigation, because using secondary (recycled) instead of primary sources in metal production carries both the potential for significant energy savings and for greenhouse gas emissions reduction. Secondary metal production is, however, limited by the relative quantity of scrap available at end-of-life for two reasons: long product lifespans during use delay the availability of the material for reuse and recycling; and end-of-life recycling rates are low, a result of inefficient collection, separation, and processing. For a few metals, additional losses exist in the form of in-use dissipation. The sum of these lost material flows forms the theoretical maximum potential for future efficiency improvements. Based on a dynamic material flow analysis, we have evaluated these factors from an energy perspective for 50 metals and calculated the corresponding greenhouse gas emissions associated with the supply of lost material from primary sources that would otherwise be used to satisfy demand. A use-by-use examination demonstrates the potential emission gains associated with major application sectors. The results show that minimizing in-use dissipation and constraints to metal recycling have the potential to reduce greenhouse gas emissions from the metal industry by about 13-23%, corresponding to 1% of global anthropogenic greenhouse gas emissions.

By-product metals are technologically essential but have problematic supply.

The growth in technological innovation that has occurred over the past decades has, in part, been possible because an increasing number of metals of the periodic table are used to perform specialized functions. However, there have been increasing concerns regarding the reliability of supply of some of these metals. A main contributor to these concerns is the fact that many of these metals are recovered only as by-products from a limited number of geopolitically concentrated ore deposits, rendering their supplies unable to respond to rapid changes in demand. Companionality is the degree to which a metal is obtained largely or entirely as a by-product of one or more host metals from geologic ores. The dependence of companion metal availability on the production of the host metals introduces a new facet of supply risk to modern technology. We evaluated companionality for 62 different metals and metalloids, and show that 61% (38 of 62) have companionality greater than 50%. Eighteen of the 38-including such technologically essential elements as germanium, terbium, and dysprosium-are further characterized as having geopolitically concentrated production and extremely low rates of end-of-life recycling. It is this subset of companion metals-vital in current technologies such as electronics, solar energy, medical imaging, energy-efficient lighting, and other state-of-the-art products-that may be at the greatest risk of supply constraints in the coming decades.

Criticality of metals and metalloids.

Imbalances between metal supply and demand, real or anticipated, have inspired the concept of metal criticality. We here characterize the criticality of 62 metals and metalloids in a 3D "criticality space" consisting of supply risk, environmental implications, and vulnerability to supply restriction. Contributing factors that lead to extreme values include high geopolitical concentration of primary production, lack of available suitable substitutes, and political instability. The results show that the limitations for many metals important in emerging electronics (e.g., gallium and selenium) are largely those related to supply risk; those of platinum group metals, gold, and mercury, to environmental implications; and steel alloying elements (e.g., chromium and niobium) as well as elements used in high-temperature alloys (e.g., tungsten and molybdenum), to vulnerability to supply restriction. The metals of most concern tend to be those available largely or entirely as byproducts, used in small quantities for highly specialized applications, and possessing no effective substitutes.

On the materials basis of modern society.

It is indisputable that modern life is enabled by the use of materials in its technologies. Those technologies do many things very well, largely because each material is used for purposes to which it is exquisitely fitted. The result over time has been a steady increase in product performance. We show that this materials complexity has markedly increased in the past half-century and that elemental life cycle analyses characterize rates of recycling and loss. A further concern is that of possible scarcity of some of the elements as their use increases. Should materials availability constraints occur, the use of substitute materials comes to mind. We studied substitution potential by generating a comprehensive summary of potential substitutes for 62 different metals in all their major uses and of the performance of the substitutes in those applications. As we show herein, for a dozen different metals, the potential substitutes for their major uses are either inadequate or appear not to exist at all. Further, for not 1 of the 62 metals are exemplary substitutes available for all major uses. This situation largely decouples materials substitution from price, thereby forcing material design changes to be primarily transformative rather than incremental. As wealth and population increase worldwide in the next few decades, scientists will be increasingly challenged to maintain and improve product utility by designing new and better materials, but doing so under potential constraints in resource availability.

Criticality of iron and its principal alloying elements.

Because modern technology depends on reliable supplies of a wide variety of materials and because of increasing concern about those supplies, a comprehensive methodology was created to quantify the degree of criticality of the metals of the periodic table. In this paper, we apply this methodology to iron and several of its main alloying elements (i.e., vanadium, chromium, manganese, and niobium). These elements represent the basic metals of any industrial society and are vital for national security and economic well-being. Assessments relating to the dimensions of criticality - supply risk, vulnerability to supply restriction, and environmental implications - for 2008 are made on the global level and for the United States. Evaluations of each of the multiple indicators are presented, with aggregate results plotted in "criticality space", together with Monte Carlo simulation-derived "uncertainty cloud" estimates. Iron has the lowest supply risk, primarily because of its widespread geological occurrence. Vanadium displays the highest cradle-to-gate environmental implications, followed by niobium, chromium, manganese, and iron. Chromium and manganese, both essential in steel making, display the highest vulnerability to supply restriction, largely because substitution or substitution at equal performance is not possible for all end-uses. From a comprehensive perspective, we regard the overall criticality as low for iron and modest for the alloying elements we evaluated.

Metal lost and found: dissipative uses and releases of copper in the United States 1975-2000.

Metals are used in a variety of ways, many of which lead to dissipative releases to the environment. Such releases are relevant from both a resource use and an environmental impact perspective. We present a historical analysis of copper dissipative releases in the United States from 1975 to 2000. We situate all dissipative releases in copper's life cycle and introduce a conceptual framework by which copper dissipative releases may be categorized in terms of intentionality of use and release. We interpret our results in the context of larger trends in production and consumption and government policies that have served as drivers of intentional copper releases from the relevant sources. Intentional copper releases are found to be both significant in quantity and highly variable. In 1975, for example, the largest source of intentional releases was from the application of copper-based pesticides, and this decreased more than 50% over the next 25 years; all other sources of intentional releases increased during that period. Overall, intentional copper releases decreased by approximately 15% from 1975 to 2000. Intentional uses that are unintentionally released such as copper from roofing, increased by the same percentage. Trace contaminant sources such as fossil fuel combustion, i.e., sources where both the use and the release are unintended, increased by nearly 50%. Intentional dissipative uses are equivalent to 60% of unintentional copper dissipative releases and more than five times that from trace sources. Dissipative copper releases are revealed to be modest when compared to bulk copper flows in the economy, and we introduce a metric, the dissipation index, which may be considered an economy-wide measure of resource efficiency for a particular substance. We assess the importance of dissipative releases in the calculation of recycling rates, concluding that the inclusion of dissipation in recycling rate calculations has a small, but discernible, influence, and should be included in such calculations.

Criticality of the geological copper family.

Because modern technology depends on reliable supplies of a wide variety of materials, and because of increasing concern about those supplies, a comprehensive methodology has been created to quantify the degree of criticality of the metals of the periodic table. In this paper, we apply this methodology to the elements of the geological copper family: Cu, As, Se, Ag, Te, and Au. These elements are technologically important, but show a substantial variation in different factors relating to their supply risk, vulnerability to supply restriction, and environmental implications. Assessments are made on corporate, national, and global levels for year 2008. Evaluations of each of the multiple indicators are presented and the results plotted in "criticality space", together with Monte Carlo simulation-derived "uncertainty cloud" estimates for each of the aggregated evaluations. For supply risk over both the medium term and long term, As is the highest risk of the six metals, with Se and Ag nearly as high. Gold has the most severe environmental implications ranking. Vulnerability to supply restriction (VSR) at the corporate level for an invented solar cell manufacturing firm shows Se, Te, and Cu as approximately equal, Cu has the highest VSR at the national level, and Cu and Au have the highest VSRs at the global level. Criticality vector magnitudes are greatest at the global level for As (and then Au and Ag) and at the national level for As and Au; at the corporate level, Se is highest with Te and Cu lower. An extension of this work, now in progress, will provide criticality estimates for several different development scenarios for the period 2010-2050.

Tracking the metal of the goblins: cobalt's cycle of use.

Cobalt is a vital element in many technological applications, which, together with its increasing end-use in batteries, makes it important to quantify its cycle of use. We have done so for the planet as a whole and for the three principal cobalt-using countries - China, Japan, and the United States - for 2005. Together, China, Japan, and the United States accounted for approximately 65% of the cobalt fabricated and manufactured into end-use products (a total of 37 Gg Co). A time residence model allowed calculations of in-use stock accumulation and recycled and landfilled flows. China had the largest accumulation of in-use stock at some 4.3 Gg Co, over half of which was comprised of consumer battery stock. More than half of the stock accumulation in the United States was estimated to be in aircraft, rocket, and gas turbine engines, with a total in-use stock accumulation of approximately 3 Gg Co. The largest amounts of cobalt landfilled in China, the United States, and the planet were from the "chemical and other uses" category, and Japan's largest landfilled flow was in consumer batteries.

Illuminating tungsten's life cycle in the United States: 1975-2000.

Tungsten's unique properties, such as its high density and melting point, are manifest in a variety of technological applications, and attention has recently centered upon the health and environmental effects of tungsten. Utilizing material flow analysis, the amounts of tungsten produced, fabricated and manufactured, entering use, and entering waste management in the United States from 1975-2000 were determined, with the inclusion of net trade, and with attention paid to the way that tungsten partitions into in-use reservoirs and the quantities of tungsten that enter the environment as a result of anthropogenic processes. The results from two approaches are presented: the first and typical, approach for historical material flow analysis studies, whereby tungsten use in products over time was approximated using end-use sectors used by the United States Bureau of Mines and the United States Geological Survey (the "end-use sector model") and a second, more detailed approach whereby the historical pattern of end-use products was determined (the "finished product model"). These models represent the first life cycle of tungsten that takes into account both finished product trade and varying residence times for products entering use. For the cumulative time period of 1975-2000, approximately 60% of the supply to fabrication and manufacturing processes in the United States consisted of imports. The tungsten embodied in products used in applications other than transportation is discarded (i.e., enters the waste stream, which encompasses both material that is eventually landfilled and that is eventually recycled) in the same year it enters service. Of its items entering end-of-life for the cumulative time period, 50-70% of tungsten is estimated to be landfilled. In both models, the largest flows of tungsten to the environment were estimated to originate from post-consumer discards. Approximately 8-17 times as much tungsten entered landfills than was estimated to be generated as waste from fabrication and manufacturing processes; for tailings, these ratios are even greater. Tungsten is an example of a critical mineral resource where the majority of the United States' supply comes from imports, it has vital uses in manufacturing, and it has a high rate of loss at end-of-life.

Dining at the periodic table: metals concentrations as they relate to recycling.

A correlation between the prices of a variety of substances and their dilutions in their initial matrices was shown in 1959 by T.K. Sherwood. The research presented here shows that the relationship holds for engineering metals today, which we termed the metals-specific Sherwood plot. The concentrations of metals in products (e.g., printed wiring boards and automobiles) and waste streams (e.g., municipal solid waste, and construction and demolition debris) were plotted with this correlation. In addition, for the products and waste streams that undergo disassembly at end-of-life, the metals concentrations of the disassembled components were also plotted. It was found that most of the metals that are currently targeted for recycling have post-disassembly concentrations that lie above the metals-specific Sherwood plot (i.e., have concentrations that are more enriched than minimum profitable ore grades). This suggests that material concentration plays a role in the viability of recycling at end-of-life. As products grow in complexity and the variety of materials used, analyses such as this one provide insight for policymakers and those interested in material sustainability into macro-level trends of material use and future recycling practices.

Fermentation extract effects on the morphology and metabolism of the rumen fungus Neocallimastix frontalis EB188.

The effects of Aspergillus oryzae fermentation extract, Amaferm, on the rumen fungus Neocallimastix frontalis EB188 were studied. The secretion of cellulase was increased by 67% and rhyzoid development was increased 3.8-fold in the presence of extract. Strength of fungal response increased in a dose-dependent manner and demonstrated a positive correlation between cell surface area and enzyme secretion. Above certain concentrations of extract, however, the development of the fungus and enzyme secretions remained at control values or slightly diminished. Supernatant fluid appearance of the intracellular enzyme, malate dehydrogenase, paralleled the secretion of cellulase both in the presence and absence of extract. Ether solubilization of extract demonstrated that the active component(s) possessed a moderately polar value between 2.7 and 2.8. Thin layer chromatography separated extract into inert, inhibitory and intensely stimulating fractions. These results support the idea that by accelerating fungal growth and metabolism, Amaferm increases the rate (or extent) of fibre degradation caused by rumen fungi and that this, in turn, may contribute to enhanced animal performance.