Dissipation of antibiotic resistance genes in manure-amended agricultural soil.

Soil antibiotic resistance due to animal manure application is of great concern in recent years. Little is known about the fate of antibiotic resistance genes (ARGs) in agricultural soils associated with long-term manure application. Here we used soil microcosms to investigate the dissipation of ARGs and the change of bacterial community in agricultural soil originated from a vegetable field which had received 24 years' swine manure application. Soil microcosms were conducted at different soil moistures and with or without biochar over a testing period of two years in lab. Results showed that continuous manure application induced an accumulation of ARGs in soil, wherein the dissipation of ARGs differed from those in non-manure amended soil. ARGs persisted in soils at least two years, although their abundance declined gradually. Meanwhile, soil moisture and biochar had significant impact on the fate of ARGs. ARGs dissipated faster in soil with higher moisture. Biochar amendment contributed to the maintenance of bacterial diversity. Within the two years of simulation experiment, biochar enhanced soil ARG retention as they dissipated slowly in the soil amended with biochar. Succession of microbial community may have sustained the transfer and resilience of ARGs. This study provides insight into the dissipation of antibiotic resistance genes in manure-applied agricultural soil.

Microbial diversity and antibiotic resistome in swine farm environments.

Swine feedlots are recognized as a reservoir of antibiotic resistance genes (ARGs). However, the microbiome and antibiotic resistome in swine wastewater and its impact on receiving environments remain to be further explored by culture independent metagenomics. We investigated the microbial diversity of swine wastewater and the receiving environments in three swine farms by 16S rRNA gene sequencing. Metagenomic sequencing was utilized to further study the antibiotic resistome in the different depths of soils in vegetable fields, which had been fertilized with swine wastewater for at least 24 years. The 16S rRNA gene sequencing showed that the microbiome of the well water, fishpond, vegetables and the field soils was affected by the respective swine farms. Significant positive correlations were found between 20 ARGs and 41 genus of bacteria across all environmental samples. The metagenomic sequencing showed that a total of 79 types of ARGs were found in soil cores (at depth of 0-20 cm, 20-40 cm and 40-70 cm) and the irrigation water (swine wastewater). Antibiotics were detected in vertical soil profiles and wastewater. Compared with the vegetable fields without animal manure application, the soils irrigated with swine wastewater harbored higher diversity of ARGs and contained higher concentrations of antibiotics. Co-occurrence of integron-related scaffolds was found in different depths of soil cores and the swine wastewater. The results suggest that environmental microbiome was changed under the impact of swine farms, and long-term manure/wastewater application have resulted in the accumulation of ARGs in deeper soils Prudent use of antibiotics and reasonable management of animal wastes in livestock feedlots should therefore be considered to reduce the dissemination of antibiotic resistance to the environment.

Fate of veterinary antibiotics during animal manure composting.

Antibiotics are widely used in animals for disease treatment and prevention. After use, these antibiotics end up in manure. Here we investigated the fate of veterinary antibiotics in animal manure during composting and their residues in manure-applied soils. The results showed that 64.7% of the detected veterinary antibiotics were removed after composting for 171 days, which mainly occurred at the thermophilic phase in the second week, followed by a long stable stage with limited variations. The removal rates for lincomycin, trimethoprim and the macrolides during the composting were >89.7%, while those for the sulfonamides, tetracyclines and fluoroquinolones were less than <63.7%. The dissipation of antibiotics during the composting was related to the change of compost physicochemical properties, especially moisture and C/N ratio. The application of compost products with antibiotic residues could still lead to soil contamination, which may pose risks of resistance selection to the soil ecosystem.

Occurrence, fate and mass loadings of antibiotics in two swine wastewater treatment systems.

Antibiotics are widely applied in livestock industry to prevent or treat animal diseases. However, those antibiotics are poorly metabolized in livestock animals, most of them being excreted via feces or urine. Hence we need to understand the removal of antibiotics in swine farm wastewater treatment systems. This study investigated occurrence and fate of various antibiotics in two full-scale swine farm wastewater treatment systems (Farm A: anaerobic digester-A2/O-lagoon; Farm B: upflow anaerobic sludge blanket (UASB)-(A/O)2-lagoon). The results showed the presence of 25 antibiotics out of 40 target antibiotics in the wastewater and sludge samples from the two farms. In Farm A, sulfamonomethoxine, sulfachlorpyridazine, oxytetracycline and lincomycin were predominant in the influent with concentrations up to 166 ±â€¯3.64 µg/L, while in the dewatered sludge chlortetracycline, oxytetracycline, tetracycline and norfloxacin were the predominant target compounds with concentrations up to 29.2 ±â€¯3.74 µg/g. In Farm B, high concentrations (up to 3630 ±â€¯1040 µg/L) of sulfachlorpyridazine, sulfamonomethoxine and lincomycin were detected in the influent, and the predominant target antibiotics detected in the dewater sludge were similar to those in Farm A, with concentrations up to 28.6 ±â€¯0.592 µg/g. The aqueous removal rates for the total antibiotics were >99.0% in the wastewater treatment plants of both farms. Among a series of treatment units, the anaerobic digester in Farm A and UASB in Farm B made a significant contribution to the elimination of the target antibiotics from the animal wastewater. The daily mass loadings of total antibiotics in the manure, influent, dewatered sludge and effluent were 17.1, 28.0, 2.53, and 0.0730 g/d for Farm A and 24.5, 354, 3.17, and 0.293 g/d for Farm B. The full-scale swine wastewater treatment facilities could effectively remove antibiotics from swine wastewater, but the dewatered sludge needs to be further treated before disposal on land.