Spectroscopic Identification of Hydrogen Bond Vibrations and Quasi-Isostructural Polymorphism in N-Salicylideneaniline.

The ortho-hydroxy aryl Schiff base 2-[(E)-(phenylimino)methyl]phenol and its deutero-derivative have been studied by the inelastic incoherent neutron scattering (IINS), infrared (IR) and Raman experimental methods, as well as by Density Functional Theory (DFT) and Density-Functional Perturbation Theory (DFPT) simulations. The assignments of vibrational modes within the 3500-50 cm-1 spectral region made it possible to state that the strong hydrogen bond in the studied compound can be classified as the so-called quasi-aromatic bond. The isotopic substitution supplemented by the results of DFT calculations allowed us to identify vibrational bands associated with all five major hydrogen bond vibrations. Quasi-isostructural polymorphism of 2-[(E)-(phenylimino)methyl]phenol (SA) and 2-[(E)-(phenyl-D5-imino)methyl]phenol (SA-C6D5) has been studied by powder X-ray diffraction in the 20-320 K temperature range.

Structural, Thermal, and Vibrational Properties of N,N-Dimethylglycine-Chloranilic Acid-A New Co-Crystal Based on an Aliphatic Amino Acid.

The new complex of N,N-Dimethylglycine (DMG) with chloranilic acid (CLA) was synthesized and examined for thermal, structural, and dynamical properties. The structure of the reaction product between DMG and CLA was investigated in a deuterated dimethyl sulfoxide (DMSO-d6) solution and in the solid state by Nuclear Magnetic Resonance (NMR) (Cross Polarization Magic Angle Spinning-CPMAS NMR). The formation of the 1:1 complex of CLA and DMG in the DMSO solution was also confirmed by diffusion measurement. X-ray single crystal diffraction results revealed that the N,N-dimethylglycine-chloranilic acid (DMG+-CLA-) complex crystallizes in the centrosymmetric triclinic P-1 space group. The X-ray diffraction and NMR spectroscopy show the presence of the protonated form of N,N-dimethylglycine and the deprotonated form of chloranilic acid molecules. The vibrational properties of the co-crystal were investigated by the use of neutron (INS), infrared (IR), and Raman (RS) spectroscopies, as well as the density functional theory (DFT) with periodic boundary conditions. From the band shape analysis of the N-CH3 bending vibration, we can conclude that the CH3 groups perform fast (τR ≈ 10-11 to 10‒13 s) reorientational motions down to a temperature of 140 K, with activation energy at ca. 6.7 kJ mol-1. X-ray diffraction and IR investigations confirm the presence of a strong N+-H···O- hydrogen bond in the studied co-crystal.

Polymorphism and Conformational Equilibrium of Nitro-Acetophenone in Solid State and under Matrix Conditions.

Conformational and polymorphic states in the nitro-derivative of o-hydroxy acetophenone have been studied by experimental and theoretical methods. The potential energy curves for the rotation of the nitro group and isomerization of the hydroxyl group have been calculated by density functional theory (DFT) to estimate the barriers of the conformational changes. Two polymorphic forms of the studied compound were obtained by the slow and fast evaporation of polar and non-polar solutions, respectively. Both of the polymorphs were investigated by Infrared-Red (IR) and Raman spectroscopy, Incoherent Inelastic Neutron Scattering (IINS), X-ray diffraction, nuclear quadrupole resonance spectroscopy (NQR), differential scanning calorimetry (DSC) and density functional theory (DFT) methods. In one of the polymorphs, the existence of a phase transition was shown. The position of the nitro group and its impact on the crystal cell of the studied compound were analyzed. The conformational equilibrium determined by the reorientation of the hydroxyl group was observed under argon matrix isolation. An analysis of vibrational spectra was achieved for the interpretation of conformational equilibrium. The infrared spectra were measured in a wide temperature range to reveal the spectral bands that were the most sensitive to the phase transition and conformational equilibrium. The results showed the interrelations between intramolecular processes and macroscopic phenomena in the studied compound.

Molecular Deformation, Charge Flow, and Spongelike Behavior in Anion-π {[M(CN)4 ]2- ;[HAT(CN)6 ]}∞ (M=Ni, Pd, Pt) Supramolecular Stacks.

The synthesis, crystal structures, spectroscopic characterization, and comprehensive quantum-chemical calculations for a novel series of anion-π hybrid salts (XPh4 )2 [M(CN)4 ][HAT(CN)6 ]⋅3 MeCN (X=P, M=NiII (1), PdII (3), PtII (5); X=As, M=NiII (2), PdII (4), PtII (6); HAT(CN)6 =1,4,5,8,9,11-hexaazatriphenylenehexacarbonitrile) are presented. The systems comprise 1D {[M(CN)4 ]2- ;[HAT(CN)6 ]}∞ stacks, in which the electron-rich metal complexes adjust their orientation to match the electron-deficient areas of HAT(CN)6 . Electronic charge-transfer interactions along the stacks result in polarization of electron density within HAT(CN)6 and in perturbations along the {[M(CN)4 ]2- ;[HAT(CN)6 ]}∞ contacts. Electronic structure analysis suggests, for example, a relocation of 0.1-0.2 e per molecule from [M(CN)4 ]2- to HAT(CN)6 and anion-π interaction energies of around -65 kcal mol-1 . A reversible structural single-crystal-to-single-crystal transformation, through desolvation/resolvation processes in the solid state, is also reported and a scheme for the formation of anion-π [M(CN)4 ]2- /HAT(CN)6 adducts in MeCN is proposed.

Phase transition, thermal dissociation and dynamics of NH3 ligands in [Cd(NH3)4](ReO4)2.

High temperature phase transition in [Cd(NH3)4](ReO4)2 at Tc=368.5K (on heating) was reported for the first time. Thermal stability was investigated by thermal analysis methods. The titled compound decomposes in three main stages. The first two are connected with deamination process whereas in the last step Re2O7 evaporates. The activation energy for NH3 lost processes was estimated from TG measurements. The dynamics of NH3 ligands in the low temperature phase was probed by various complementary techniques. Temperature dependent band shape analysis of properly chosen infrared and Raman scattering vibrational bands was performed. It was found that activation energy for NH3 reorientational motion (below 300K) is rather small and is equal to ca. 4kJmol(-1). The quasielastic neutron scattering measurements revealed that NH3 groups perform fast stochastic reorientational motion even in the low temperatures. The neutron and X-ray powder diffraction data do not revealed any drastic changes in the crystal structure in the wide temperature range.

Vibrations and reorientations of NH3 molecules in [Mn(NH3)6](ClO4)2 studied by infrared spectroscopy and theoretical (DFT) calculations.

The vibrational and reorientational motions of NH3 ligands and ClO4(-) anions were investigated by Fourier transform middle-infrared spectroscopy (FT-IR) in the high- and low-temperature phases of [Mn(NH3)6](ClO4)2. The temperature dependencies of full width at half maximum (FWHM) of the infrared bands at: 591 and 3385cm(-1), associated with: ρr(NH3) and νas(N-H) modes, respectively, indicate that there exist fast (correlation times τR≈10(-12)-10(-13)s) reorientational motions of NH3 ligands, with a mean values of activation energies: 7.8 and 4.5kJmol(-1), in the phase I and II, respectively. These reorientational motions of NH3 ligands are only slightly disturbed in the phase transition region and do not significantly contribute to the phase transition mechanism. Fourier transform far-infrared and middle-infrared spectra with decreasing of temperature indicated characteristic changes at the vicinity of PT at TC(c)=137.6K (on cooling), which suggested lowering of the crystal structure symmetry. Infrared spectra of [Mn(NH3)6](ClO4)2 were recorded and interpreted by comparison with respective theoretical spectra calculated using DFT method (B3LYP functional, LANL2DZ ECP basis set (on Mn atom) and 6-311+G(d,p) basis set (on H, N, Cl, O atoms) for the isolated equilibrium two models (Model 1 - separate isolated [Mn(NH3)6](2+) cation and ClO4(-) anion and Model 2 - [Mn(NH3)6(ClO4)2] complex system). Calculated optical spectra show a good agreement with the experimental infrared spectra (FT-FIR and FT-MIR) for the both models.

Vibrations and reorientations of H2O molecules in [Sr(H2O)6]Cl2 studied by Raman light scattering, incoherent inelastic neutron scattering and proton magnetic resonance.

Vibrational-reorientational dynamics of H2O ligands in the high- and low-temperature phases of [Sr(H2O)6]Cl2 was investigated by Raman Spectroscopy (RS), proton magnetic resonance ((1)H NMR), quasielastic and inelastic incoherent Neutron Scattering (QENS and IINS) methods. Neutron powder diffraction (NPD) measurements, performed simultaneously with QENS, did not indicated a change of the crystal structure at the phase transition (detected earlier by differential scanning calorimetry (DSC) at TC(h)=252.9 K (on heating) and at TC(c)=226.5K (on cooling)). Temperature dependence of the full-width at half-maximum (FWHM) of νs(OH) band at ca. 3248 cm(-1) in the RS spectra indicated small discontinuity in the vicinity of phase transition temperature, what suggests that the observed phase transition may be associated with a change of the H2O reorientational dynamics. However, an activation energy value (Ea) for the reorientational motions of H2O ligands in both phases is nearly the same and equals to ca. 8 kJ mol(-1). The QENS peaks, registered for low temperature phase do not show any broadening. However, in the high temperature phase a small QENS broadening is clearly visible, what implies that the reorientational dynamics of H2O ligands undergoes a change at the phase transition. (1)H NMR line is a superposition of two powder Pake doublets, differentiated by a dipolar broadening, suggesting that there are two types of the water molecules in the crystal lattice of [Sr(H2O)6]Cl2 which are structurally not equivalent average distances between the interacting protons are: 1.39 and 1.18 Å. However, their reorientational dynamics is very similar (τc=3.3⋅10(-10) s). Activation energies for the reorientational motion of these both kinds of H2O ligands have nearly the same values in an experimental error limit: and equal to ca. 40 kJ mole(-1). The phase transition is not seen in the (1)H NMR spectra temperature dependencies. Infrared (IR), Raman (RS) and inelastic incoherent neutron scattering (IINS) spectra were calculated by the DFT method and quite a good agreement with the experimental data was obtained.

Vibrational and reorientational motions of H2O ligands, phase transition and thermal properties of [Sr(H2O)6]Cl2.

One phase transition (PT) at TC(h)=252.9K (on heating) and at TC(c)=226.5K (on cooling) was detected by DSC for [Sr(H2O)6]Cl2 in 123-295K range. Thermal hysteresis of this PT equals to 26.4K. Entropy change (ΔS) value at this first-order type phase transition equals to ca. 1.5Jmol(-1)K(-1). The temperature dependences of the full width at half maximum (FWHM) values of the infrared bands associated with ρt(H2O)E and δas(HOH)E modes (at ca. 417 and 1628cm(-1), respectively) suggest that the observed phase transition is associated with a sudden change of a speed of the H2O reorientational motions. The H2O ligands in the high temperature phase reorientate quickly (correlation times 10(-11)-10(-13)s) with the activation energy of ca. 2kJmol(-1). Below TC(c) probably a part of the H2O ligands stop their reorientation, while the remainders continue their fast reorientation but with the activation energy of ca. 8kJmol(-1). Far and middle infrared spectra indicated characteristic changes at the vicinity of PT with decreasing of temperature, which suggested lowering of the crystal structure symmetry. Splitting of the band (at 3601cm(-1)) connected with vas(OH) mode near the TC(c) suggests lowering of the crystal lattice symmetry. All these facts suggest that the discovered PT is connected both with a change of the reorientational dynamics of the H2O ligands and with the change of the crystal structure.

Vibrations and reorientations of H2O molecules and NO3(-) anions in [Ca(H2O)4](NO3)2 studied by incoherent inelastic neutron scattering, Raman light scattering, and infrared absorption spectroscopy.

The vibrational and reorientational motions of H(2)O ligands and NO(3)(-) anions were investigated by Fourier transform middle-infrared Raman scattering (RS) spectroscopy and phonon density of states, calculated from incoherent inelastic neutron scattering, in the high- and low-temperature phases of [Ca(H(2)O)(4)](NO(3))(2). The theoretical IR and RS spectra were also calculated by means of the quantum chemistry method using density functional theory with PBE1PBE functional at 6-311++G(2d,2p) basis set level. The temperature dependences of the full width at half maximum values of nu(s)(H(2)O) bands in both the infrared absorption and the RS spectroscopy suggest that the observed phase transitions (at T(C1) and T(C2)) are not connected with a drastic change in the speed of H(2)O reorientational motions. However, similar Raman nu(4)(NO(3)(-)) band shape measurements as a function of temperature revealed the existence of a fast NO(3)(-) reorientation in phase I, which is abruptly slowed at the phase transition at T(C1). Activation energy values for the reorientational motions of H(2)O ligands and NO(3)(-) anions were calculated.