Investigating Soil-Root Interactions with the Numerical Model R-SWMS.

In this chapter, we present the Root and Soil Water Movement and Solute transport model R-SWMS, which can be used to simulate flow and transport in the soil-plant system. The equations describing water flow in soil-root systems are presented and numerical solutions are provided. An application of R-SWMS is then briefly discussed, in which we combine in vivo and in silico experiments in order to decrypt water flow in the soil-root domain. More precisely, light transmission imaging experiments were conducted to generate data that can serve as input for the R-SWMS model. These data include the root system architecture, the soil hydraulic properties and the environmental conditions (initial soil water content and boundary conditions, BC). Root hydraulic properties were not acquired experimentally, but set to theoretical values found in the literature. In order to validate the results obtained by the model, the simulated and experimental water content distributions were compared. The model was then used to estimate variables that were not experimentally accessible, such as the actual root water uptake distribution and xylem water potential.

Mechanistic modeling of pesticide uptake with a 3D plant architecture model.

Meaningful assessment of pesticide fate in soils and plants is based on fate models that represent all relevant processes. With mechanistic models, these processes can be simulated based on soil, substance, and plant properties. We present a mechanistic model that simulates pesticide uptake from soil and investigate how it is influenced, depending on the governing uptake process, by root and substance properties and by distributions of the substance and water in the soil profile. A new root solute uptake model based on a lumped version of the Trapp model (Trapp, 2000) was implemented in a coupled version of R-SWMS-ParTrace models for 3-D water flow and solute transport in soil and root systems. Solute uptake was modeled as two individual processes: advection with the transpiration stream and diffusion through the root membrane. We set up the model for a FOCUS scenario used in the European Union (EU) for pesticide registration. Considering a single vertical root and advective uptake only, the root hydraulic properties could be defined so that water and substance uptake and substance fate in soil showed a good agreement with the results of the 1D PEARL model, one of the reference models used in the EU for pesticide registration. Simulations with a complex root system and using root hydraulic parameters reported in the literature predicted larger water uptake from the upper root zone, leading to larger pesticide uptake when pesticides are concentrated in the upper root zone. Dilution of root water concentrations at the top root zone with water with low pesticide concentration taken up from the bottom of the root zone leads to larger uptake of solute when uptake was simulated as a diffusive process. This illustrates the importance of modeling uptake mechanistically and considering root and solute physical and chemical properties, especially when root-zone pesticide concentrations are non-uniform.

Brote de botulismo en Castellón / Botulism outbreak in Castellón (Spain)

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