Photoacoustic Calorimetry Studies of O2-Sensing FixL and (R200, I209) Variants from Sinorhizobium meliloti Reveal Conformational Changes Coupled to Ligand Photodissociation from the Heme-PAS Domain.

FixL is an oxygen-sensing heme-PAS protein that regulates nitrogen fixation in the root nodules of plants. In this paper, we present the first photothermal studies of the full-length wild-type FixL protein from Sinorhizobium meliloti and the first thermodynamic profile of a full-length heme-PAS protein. Photoacoustic calorimetry studies reveal a quadriphasic relaxation for SmFixL*WT and the five variant proteins (SmFixL*R200H, SmFixL*R200Q, SmFixL*R200E, SmFixL*R200A, and SmFixL*I209M) with four intermediates from <20 ns to ∼1.5 µs associated with the photodissociation of CO from the heme. The altered thermodynamic profiles of the full-length SmFixL* variant proteins confirm that the conserved heme domain residues R200 and I209 are important for signal transduction. In contrast, the truncated heme domain, SmFixLH128-264, shows only a single, fast monophasic relaxation at <50 ns associated with the fast disruption of a salt bridge and release of CO to the solvent, suggesting that the full-length protein is necessary to observe the conformational changes that propagate the signal from the heme domain to the kinase domain.

Photophysical comparison of Zn(II) phthalocyanaine tetrasulfonate and Zn(II) tetrakis(4-sulfonatophenyl)porphyrin encapsulated within the Zn-polyhedral metal organic framework, HKUST-1(Zn).

Porphyrins and phthalocyanines are ideal candidates for the development of photoactive porous metal organic frameworks (MOFs) due to their broad absorption spectra in the visible and near UV regions, high molar extinction coefficients and long triplet state lifetimes. An important factor in the development of porphyrin/phthalocyanine based MOFs is the extent to which the pore modulates the photophysical properties of the guest. Here, two structurally related guests, Zn(II)tetra(4-sulfonatophenyl)porphyrin (Zn4SP) and Zn(II)phthalocyanine tetrasulfonate (ZnPcS4) have been encapsulated within the pores of the MOF HKUST-1(Zn). Both the ZnPcS4@HKUST-1(Zn) and Zn4SP@HKUST-1(Zn) display bathochromic shifts in the Soret absorption band and steady state emission spectra as well as biphasic emissions lifetimes, relative to the chromophores in solution. These results are consistent with the pore modulating the excited state conformations of both chromophores. Interestingly, rotational control of the phenyl groups associated with Zn4SP@HKUST-1(Zn) appears to have a moderate impact on the photophysics.

Confinement-guided photophysics in MOFs, COFs, and cages.

In this review, the dependence of the photophysical response of chromophores in the confined environments associated with crystalline scaffolds, such as metal-organic frameworks (MOFs), covalent-organic frameworks (COFs), and molecular cages, has been carefully evaluated. Tunability of the framework aperture, cavity microenvironment, and scaffold topology significantly affects emission profiles, quantum yields, or fluorescence lifetimes of confined chromophores. In addition to the role of the host and its effect on the guest, the methods for integration of a chromophore (e.g., as a framework backbone, capping linker, ligand side group, or guest) are discussed. The overall potential of chromophore-integrated frameworks for a wide-range of applications, including artificial biomimetic systems, white-light emitting diodes, photoresponsive devices, and fluorescent sensors with unparalleled spatial resolution are highlighted throughout the review.

Framework induced deformation modulates the photophysical properties of ZnTetra(4-pyridyl)porphyrin incorporated within a new metal organic framework, RWLAA-1.

Porphyrin based metal organic frameworks (MOFs) have provided a broad platform through which a wide variety of light harvesting applications have been developed. Of particular interest within light harvesting MOFs containing porphyrin chromophores is the extent to which the both environment of the porphyrin and the porphyrin conformation modulate the photophysical properties. With this in mind, a new MOF (RWLAA-1) has been synthesized based on zinc cations linked by zinc(ii) tetra(4-pyridyl)porphyrin (ZnTPyP) and benzene tricarboxylate (H3BTC) linkers in which the porphyrin exhibits significant conformational distortions that have a profound effect on the photophysics of the material including bathochromic shifts in both the optical (Soret and visible bands) and emission bands, reduction in the energy separation between the Q(0,0) and Q(0,1) emission bands and shorter singlet and triplet state lifetimes. These effects are consistent with the porphyrin deformation resulting in changes in the porphyrin electronic structure and excited state conformational dynamics that alter the vibronic coupling between the excited states (S1 and T1) and the S0 ground state.

Modulation of Osmium(II) Tris(2,2'-bipyridine) Photophysics through Encapsulation within Zinc(II) Trimesic Acid Metal Organic Frameworks.

The Os(II) tris(2,2'-bipyridine) (OsBpy) complex exhibits optical properties that are particularly attractive for light harvesting systems due to the broad absorption spectrum extending throughout the solar spectrum. However, the relatively short lifetime of the triplet metal to ligand charge transfer state (3MLCT) relative to the related Ru(II)tris(2,2'-bipyridine) (RuBpy) has limited applications. Here, the encapsulation of OsBpy within two distinct Zn(II)-trimesic acid MOFs, HKUST-1(Zn) and USF-2 is demonstrated in an effort to extend the 3MLCT lifetime. Encapsulation results in a hypsochromatic shift of the steady-state emission band in both frameworks resulting from a destabilization of the 3MLCT. The encapsulated OsBpy also exhibits extended emission lifetimes in both HKUST-1(Zn) (104 ns in MOF vs 50 ns in methanol) and USF-2 (81 ns in MOF vs 50 ns in methanol) arising from changes in the nonradiative decay constants in both systems. The data are also consistent with vibronic perturbations involved in mixing between higher energy 3MLCT* and ligand field states.

Guest to framework photoinduced electron transfer in a cobalt substituted RWLC-2 metal organic framework.

Photoinduced electron transfer (PET) between donors and acceptors in porous materials is a key element in the development of light harvesting applications. Metal organic frameworks (MOFs) are ideal materials for PET processes due to their tunable pore size and diversity in framework building units. Here, PET between excited [Ru(2,2'-bipyridine)3]2+ (RuBpy) and Co-carboxylate clusters composing the metal building blocks of a RWLC-2 metal organic framework is described. The lifetime of the RuBpy decreases from ∼600 ns in deaerated solution to 9.5 ns (kET ∼ 1 × 108 s-1) when encapsulated within CoRWLC-2. The decrease in lifetime is attributed to PET between the 3MLCT of RuBpy to the Co ion cluster composing the MOF building blocks. A fit of the lifetime vs. temperature data to the semi-empirical Marcus equation gives a reorganizational energy of 1.6 eV and an electronic coupling factor (HAB) of 0.006 eV.

A novel photo-active Cd:1,4-benzene dicarboxylate metal organic framework templated using [Ru(ii)(2,2'-bipyridine)3]2+: synthesis and photophysics of RWLC-5.

The development of photoactive porous materials is of significant importance for applications ranging from sustainable energy to pharmaceutical development and catalysis. A particularly attractive class of photo-active materials is the metal-organic framework (MOF)-based platform in which the photo-active elements are components of the framework itself or photo-active guests encapsulated within the MOF cavities. It has now been demonstrated that the photo-active [Ru(2,2'-bipyridine)3]2+ (RuBpy) complex can template the formation of MOFs with varying three dimensional structures. Here we report the synthesis and structural and photo-physical characterization of a new RuBpy-templated MOF composed of Cd2+ ions with 1,4-benzenedicarboxylate ligands (RWLC-5) that contains crystallographically resolved RuBpy complexes. The new material displays a biphasic emission decay (130 ns and 1180 ns, T = 20 °C) and a bathochromically shifted emission maximum, relative to RuBpy in solution (603 nm for RuBpy in ethanol vs. 630 nm for RWLC-5). The emission lifetimes also do not display temperature-dependent decays which are characteristic of RuBpy type complexes as well as other RuBpy templated MOFs. The lack of temperature dependence is consistent with the complete deactivation of the 3LF state of the encapsulated RuBpy complex due to a constrained environment. The fast phase decay is attributed to a water molecule hydrogen bonded to a bipyridine ligand associated with ∼38% of the encapsulated RuBpy complexes resulting in the nonradiative deactivation of the 3MLCT state.

Synthesis, characterization, and cellular localization of a fluorescent probe of the antimalarial 8-aminoquinoline primaquine.

Primaquine (PQ) is the only commercially available drug that clears dormant liver stages of malaria and blocks transmission to mosquito vectors. Although an old drug, much remains to be known about the mechanism(s) of action. Herein we develop a fluorescent tagged PQ to discover cellular localization in the human malaria parasite, Plasmodium falciparum. Successful synthesis and characterization of a primaquine-coumarin fluorescent probe (PQCP) demonstrated potency equivalent to the parent drug and the probe was not cytotoxic to HepG2 carcinoma cells. Cellular localization was found primarily in the cytosol of the asexual erythrocytic and gametocyte stages of parasite development.

Time resolved calorimetry of photo-induced folding in horse heart cytochrome c at high pH.

Here the molar volume and enthalpy changes associated with the early events in the folding of ferrocytochrome c (Cc) at high pH have been examined using time resolved photoacoustic calorimetry (PAC). The data reveal an overall volume change of 1.3 ± 0.3 mL mol-1 and an enthalpy change of 13 ± 7 kcal mol -1 occurring subsequent to photodissociation of the unfolded CO bound Cc species in <∼20 ns. Two additional kinetic phases are observed that are associated with non-native His binding (ΔH and ΔV of 2 ± 4 kcal mol-1 and -0.5 mL mol-1, τ âˆ¼ 2.5 µs ) and Met binding (ΔH and ΔV -0.4 ± 2 kcal mol-1 and -0.1 ± 0.1 mL mol-1, τ∼ 660 ns). Considering only protein conformational changes (excluding volume and enthalpies associated with heme ligation events) the initial conformational event exhibits a ΔH and ΔV of 6 ± 3 kcal mol-1 and -3±0.1 mL mol-1, respectively, that are attributed to a small contraction of the unfolded protein. The corresponding enthalpy associated with both native and non-native ligand binding are found to be -5±4 kcal mol-1 (Fe-Met) and +20 ± 4 kcal mol-1 (Fe-His) with the change in volume for both phases being essential negligible. This would indicate that non-native ligand binding likely occurs from an already collapsed conformation.

Photoacoustic calorimetry studies of CO photo-dissociation from chloramine-T modified horse heart cytochrome-c.

Treatment of horse heart Cytochrome-c (Cc) with N-chloro-4-toluosulfonamide (Chloramine-t, CT) results in the oxidation of methionine (Met) residues to the corresponding sulfoxide including the distal heme ligand, Met80. The resulting Fe-sulfoxide coordination is sufficiently labile in the ferrous form to be displaced by gaseous ligands, including CO. Photolysis of the CO-CT-Cc complex provides an opportunity to examine ligand binding dynamics that are associated with a relatively rigid distal heme pocket. In this work, photoacoustic calorimetry (PAC) was utilized to obtain the kinetics as well as enthalpy and molar volume changes subsequent to CO photo-dissociation from CO-CT-Cc. Previous photolysis studies of CO-CT-Cc have led to a proposed model for ligand recombination in which the Met80-sulfoxide and CO recombine with the heme on relatively slow timescales (50 µs and ∼500 µs, respectively). The PAC data presented here reveals two additional kinetic phases with lifetimes of <20 ns and 534 ± 75 ns. The fast phase (<20 ns) is associated with an ΔH of 44 ± 5 kcal mol-1 and ΔV of -0.5 ± 0.5 mL mol-1, whereas the slower phase (534 ns) is associated with a small ΔH of 2 ± 3 kcal mol-1 and ΔV of 1 ± 0.5 mL mol-1.

Molecular Mechanism of Protein Kinase Recognition and Sorting by the Hsp90 Kinome-Specific Cochaperone Cdc37.

Despite the essential functions of Hsp90, little is known about the mechanism that controls substrate entry into its chaperone cycle. We show that the role of Cdc37 cochaperone reaches beyond that of an adaptor protein and find that it participates in the selective recruitment of only client kinases. Cdc37 recognizes kinase specificity determinants in both clients and nonclients and acts as a general kinase scanning factor. Kinase sorting within the client-to-nonclient continuum relies on the ability of Cdc37 to challenge the conformational stability of clients by locally unfolding them. This metastable conformational state has high affinity for Cdc37 and forms stable complexes through a multidomain cochaperone interface. The interaction with nonclients is not accompanied by conformational changes of the substrate and results in substrate dissociation. Collectively, Cdc37 performs a quality control of protein kinases, where induced conformational instability acts as a "flag" for Hsp90 dependence and stable cochaperone association.

A new photoactive Ru(II)tris(2,2'-bipyridine) templated Zn(II) benzene-1,4-dicarboxylate metal organic framework: structure and photophysical properties.

It has now been demonstrated that Ru(ii)tris(2,2'-bipyridine) (RuBpy) can be utilized to template the formation of new metal organic framework (MOF) materials containing crystallographically resolved RuBpy clusters with unique photophysical properties. Two such materials, RWLC-1 and RWLC-2, have now been reported from our laboratory and are composed of RuBpy encapsulated in MOFs composed of Zn(ii) ions and 1,3,5-tris(4-carboxyphenyl)benzene ligands (C. L. Whittington, L. Wojtas and R. W. Larsen, Inorg. Chem., 2014, 53, 160-166). Here, a third RuBpy templated photoactive MOF is described (RWLC-3) that is derived from the reaction between Zn(ii) ions and 1,4-dicarboxybenzene in the presence of RuBpy. Single Crystal X-ray diffraction studies determined the position of RuBpy cations within the crystal lattice. The RWLC-3 structure is described as a 2-fold interpenetrated pillared honeycomb network (bnb) containing crystallographically resolved RuBpy clusters. The two bnb networks are weakly interconnected. The encapsulated RuBpy exhibits two emission decay lifetimes (τ-fast = 120 ns, τ-slow = 453 ns) and a bathochromic shift in the steady state emission spectrum relative to RuBpy in ethanol.

Fixed distance photoinduced electron transfer between Fe and Zn porphyrins encapsulated within the Zn HKUST-1 metal organic framework.

An attractive strategy for the development of photocatalytic metal organic framework (MOF) materials is to co-encapsulate a photoactive electron donor with a catalytic electron acceptor within the MOF. Here we report the co-encapsulation of both Zn(ii) tetrakis(tetra 4-sulphonatophenyl)porphyrin (Zn4SP) and Fe(iii) tetrakis(tetra 4-sulphonatophenyl)porphyrin (Fe4SP) into an HKUST-1 (Zn) MOF and demonstrate photoinduced electron transfer (ET) between the co-encapsulated guest. Photo-excitation of the Zn4SP results in fixed-distance inter-molecular ET between the encapsulated (3)Zn4SP and the Fe(iii)4SP as evident by the reduction in the encapsulated (3)Zn4SP lifetime from 890 µs (kobs = 1.1 × 10(3) s(-1)) to 83 µs (kobs = 1.2 × 10(4) s(-1)) in the presence of Fe4SP giving a kET ∼ 1.1 × 10(4) s(-1). The data are consistent with ET taking place between encapsulated porphyrins that are two cages apart in distance with a reorganizational energy of ∼1.65 eV, ß = 1.25 and ΔG° = -0.97 eV (within a semi-classical Marcus theory framework).

Sulfono-γ-AApeptides as a new class of nonnatural helical foldamer.

Foldamers offer an attractive opportunity for the design of novel molecules that mimic the structures and functions of proteins and enzymes including biocatalysis and biomolecular recognition. Herein we report a new class of nonnatural helical sulfono-γ-AApeptide foldamers of varying lengths. The crystal structure of the sulfono-γ-AApeptide monomer S6 illustrates the intrinsic folding propensity of sulfono-γ-AApeptides, which likely originates from the bulkiness of tertiary sulfonamide moiety. The two-dimensional solution NMR spectroscopy data for the longest sequence S1 demonstrates a 10/16 right-handed helical structure. Optical analysis using circular dichroism further supports well- defined helical conformation of sulfono-γ-AApeptides in solution containing as few as five building blocks. Future development of sulfono-γ-AApeptides may lead to new foldamers with discrete functions, enabling expanded application in chemical biology and biomedical sciences.

Ruthenium(II) tris(2,2'-bipyridine)-templated zinc(II) 1,3,5-tris(4-carboxyphenyl)benzene metal organic frameworks: structural characterization and photophysical properties.

The ability to confine photoactive catalysts within metal organic framework (MOF) materials affords the opportunity to expand the functional diversity of these materials into solar-based applications. Here, two new Ru(II) tris(2,2'-bipyridine) (RuBpy)-based photoactive materials derived from reactions between Zn(II) ions and 1,3,5-tris(4-carboxyphenyl)benzene and templated by the presence of RuBpy (RWLC-1 and RWLC-2) are described with regard to structure and RuBpy photophysics. RuBpy cations have been successfully encapsulated within the cavities (RWLC-1) and channels (RWLC-2) of the new negatively charged frameworks, both of which are synthesized simultaneously in a single reaction vial. Single-crystal X-ray diffraction studies allowed for determination of the RuBpy position within crystal voids. RuBpy encapsulated in each of the two new MOFs exhibits biphasic triplet metal to ligand charge transfer ((3)MLCT) emission decay lifetimes (τRWLC-1-fast = 237 ns, τRWLC-1-slow = 1.60 µs, τRWLC-2-fast = 171 ns, and τRWLC-2-slow = 797 ns at 25 °C) consistent with two populations of RuBpy complexes, one being encapsulated in highly space-restricted cavities giving rise to a longer (3)MLCT lifetime, while the second is encapsulation within a larger nonperiodic pore or defect with a coencapsulated quencher giving rise to short emission lifetimes. Taken together, these results represent examples of the templating ability of RuBpy to produce novel materials with distinct photophysical environments of the encapsulated guests.

Spectroscopic investigation of the noncovalent association of the nerve agent simulant diisopropyl methylphosphonate (DIMP) with zinc(II) porphyrins.

Organophosphonates pose a significant threat as chemical warfare agents, as well as environmental toxins in the form of pesticides. Thus, methodologies to sense and decontaminate these agents are of significant interest. Porphyrins and metalloporphyrins offer an excellent platform to develop chemical threat sensors and photochemical degradation systems. These highly conjugated planar molecules exhibit relatively long-lived singlet and triplet states with high quantum yields and also form self-associated complexes with a wide variety of molecules. A significant aspect of porphyrins is the ability to functionalize the peripheral ring system either directly to the pyrrole rings or to the bridging methine carbons. In this report, steady-state absorption and fluorescence are utilized to probe binding affinities of a series of symmetric and asymmetric zinc(II) metalloporphyrins for the nerve agent simulant diisopropyl methylphosphonate (DIMP) in hexane. The red shifts in the absorption and emission spectra observed for all of the metalloporphyrins probed are discussed in the frame of Gouterman's four orbital model and a common binding motif involving coordination between the metalloporphyrin and DIMP via interaction between the zinc metal center of the porphyrin and phosphoryl oxygen of DIMP (Zn-O═P) is proposed.

How can proteins enter the interior of a MOF? Investigation of cytochrome c translocation into a MOF consisting of mesoporous cages with microporous windows.

It has been demonstrated for the first time that the heme protein cytochrome c (Cyt c) can enter the interior of a MOF despite the larger molecular dimension of the protein relative to the access pore sizes. Mechanistic studies suggest that the Cyt c molecules must undergo a significant conformational change during translocation into the MOF interior through the relatively small nanopores.

Fluorescent properties and resonance energy transfer of 3,4-bis(2,4-difluorophenyl)-maleimide.

A fluorescent compound 3,4-bis(2,4-difluorophenyl)-maleimide from the 3,4-diaryl-substituted maleimides was synthesized and determined to have a Stokes shift of 140 nm (λ(abs) 341 nm, λ(em) 481 nm), a high fluorescent quantum yield (Φ(fl) 0.61) and an extinction coefficient ε((340)) of 48 400 M(-1) cm(-1) in dichloromethane. For the first time we demonstrated the successful implementation of a 3,4-diaryl-substituted maleimide molecule as a donor component in FRET experiments.

Photophysical studies of Ru(II)tris(2,2'-bipyridine) confined within a Zn(II)-trimesic acid polyhedral metal-organic framework.

The ability to confine photoactive catalysts within metal-organic framework (MOF) materials affords the opportunity to expand the functional diversity of these materials into solar based applications. Here, the confinement of Ru(II)tris(2,2'-bipyridine) (RuBpy) by a MOF material derived from Zn(II) ions and trimesic acid (hereafter, USF2) is examined. Although the encapsulated RuBpy could not be crystallographically resolved within the MOF framework, the photophysical properties of the complex are characteristic of confinement including extended triplet metal-to-ligand ((3)MLCT) lifetime (τethanol = 614 ns and τUSF2 = 1.2 µs at 25 °C) and a slight hypsochromic shift in the steady-state emission spectrum relative to RuBpy in ethanol. The extended lifetime is attributed to a deactivation of a nonradiative (3)dd that is antibonding with respect to the Ru(II)-bipyridine due to a confined molecular environment. These results represent one of the first examples of RuBpy encapsulation and photophysical characterization within a polyhedral MOF material.

Understanding ion sensing in Zn(II) porphyrins: spectroscopic and computational studies of nitrite/nitrate binding.

The development of effective sensor elements relies on the ability of a chromophore to bind an analyte selectively and then study the binding through changes in spectroscopic signals. In this report the ability of Zn(II) Tetraphenyl Porphyrin (ZnTPP) to selectively bind nitrite over nitrate ions is examined. The results of Benesi-Hildebrand analysis reveals that ZnTPP binds NO(2)(-) and NO(3)(-) ions with association constants of 739 ± 70 M(-1) and 134 ± 15 M(-1), respectively. Interestingly, addition of a pyridine ligand to the fifth coordination site of the Zn(II) center enhances ion binding with the association constants increasing to 71,300 ± 8,000 M(-1) and 18,900 ± 3,000 M(-1) for nitrite and nitrate, respectively. Density functional theory calculations suggest a binding mechanism through which Zn(II)-porphyrin interactions are disrupted by ligand and base coordination to Zn(II), with Zn(II) having more favorable overlap with nitrite orbitals, which are less delocalized than nitrate orbitals. Overall, these provide new insights into the ability to tune the affinity and selectivity of porphyrin based sensors utilizing electronic factors associated with the central Zn(II) ion.