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1.
Chem Phys Lipids ; : 105447, 2024 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-39368727

RESUMEN

In this study, a rapid detection method utilizing colloidal gold immunochromatography (CG-ICA) was developed for the detection of illegally added prednisone acetate in health foods. Initially, the preparation conditions of colloidal gold solution were optimized. The optimal potassium carbonate dosage, antibody diluent type, antibody dosage, probe labeling time, blocking time and BSA dosage were determined. Technical analysis was performed to ensure that the established CG-ICA exhibited satisfactory color development and inhibition rates. Under optimized conditions, the cut-off value of CG-ICA was 250µg/kg. The assay demonstrated a sensitivity of 100%, a false positive rate of 8%, and a false negative rate of 0, indicating high specificity for prednisone acetate. The results obtained from testing actual samples were consistent with those obtained using LC-MS/MS, thereby verifying the reliability of the developed method. This method offers robust support for the rapid detection of illegally added prednisone acetate in health foods.

2.
J Hazard Mater ; 480: 135824, 2024 Sep 11.
Artículo en Inglés | MEDLINE | ID: mdl-39270587

RESUMEN

Sodium pentachlorophenate (PCP) is widely used as a herbicide, fungicide, or molluscicide. It is highly toxic, easily soluble in water, making it highly prone to diffusion and causing water and soil pollution. Through the food chain, it enters animal bodies and remains in food, causing toxicity to humans and animals. Therefore, establishing a rapid and simple detection method for PCP is crucial for human health and environmental protection. Herein, lanthanide metal Eu3+ was introduced into UiO-66-(COOH)2 by post-synthesis modification, and the nanomaterials prepared based on this method have the advantages of both UiO-66-(COOH)2 and Eu3+. The rigid skeleton structure of UiO-66-(COOH)2 can protect the activity of antibody, the detection environment pH tolerance range of UiO-66-Eu is 3-11. While Eu3+ has long fluorescence lifetime, high fluorescence intensity, high signal-to-noise ratio, and low photobleaching rate. UiO-66-Eu-based immunochromatography assay was successfully applied in PCP detection with the detection limits of 0.84, 0.98, and 0.37 µg/kg for pork, chicken, and shrimp, respectively, which was up to 10-fold more sensitive than the reported ICAs. The recoveries ranged from 79.7 %-113.1 %, with the coefficient of variation from 6.6 %-17.1 %. Parallel detection of 30 samples by LC-MS/MS showed a good correlation with that of our proposed method (R2 >0.98). This work not only provides a creative attempt for UiO-66-Eu based highly sensitive and strongly tolerant ICAs, but also guarantees human health and environmental protection.

3.
Microbiol Spectr ; 12(10): e0034524, 2024 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-39254031

RESUMEN

The potential of CRISPR/Cas systems for nucleic acid detection in novel biosensing applications is remarkable. The current clinical diagnostic detection of Streptococcus pyogenes (S. pyogenes) is based on serological identification, culture, and PCR. We report a rapid, simple, and sensitive method for detecting and screening for S. pyogenes. This novel method is a promising supplemental test. After 10 min of the sample processing and 10 min of recombinase polymerase amplification, followed by 10 min of Cas12 reaction and 3 min of lateral flow biosensor (LFB) readout, a visible outcome can be observed without the need for magnification within 33 min. This platform is robust, inexpensive, and appropriate for on-site testing. A new technique for detection was created using CRISPR-Cas12a technology, which includes two measurements: a fluorescent-CRISPR-S. pyogenes test and a LFB-CRISPR-S. pyogenes test. An approach utilizing CRISPR Cas12a was developed, and the accuracy and precision of this technique were assessed. The LoD for the fluorescence-CRISPR- S. pyogenes assay was 1 copy/µL, and the technique effectively differentiated S. pyogenes from other microorganisms. Moreover, the detection outcomes were presented in a user-friendly manner using lateral flow biosensor strips. Conclusion: A rapid and sensitive Cas12a/crRNA assay using recombinase RPA and LFB was developed to detect S. pyogenes. The Cas12a/crRNA-based assay exhibited high specificity among different bacteria strains and extremely high sensitivity. The accuracy and rapidity of this method make it a promising tool for S. pyogenes detection and screening. IMPORTANCE: Patients may experience a range of symptoms due to Streptococcus pyogenes infections, including superficial skin infections, pharyngitis, and invasive diseases in subcutaneous tissues like streptococcal toxic shock syndrome. At present, the clinical diagnostic detection of S. pyogenes is based on serological identification, culture, and PCR. These detection methods are time-consuming and require sophisticated equipment, making these methods challenging for routine laboratories. Thus, there is a need for a detection platform that is capable of quickly and accurately identifying S. pyogenes. In this study, a rapid and sensitive Cas12a/crRNA assay using recombinase RPA and LFB was developed to detect S. pyogenes. The Cas12a/crRNA-based assay exhibited high specificity among different bacteria strains and extremely high sensitivity. This method probably plays an important role for S. pyogenes detection and screening.


Asunto(s)
Técnicas Biosensibles , Sistemas CRISPR-Cas , Técnicas de Amplificación de Ácido Nucleico , Recombinasas , Infecciones Estreptocócicas , Streptococcus pyogenes , Streptococcus pyogenes/genética , Streptococcus pyogenes/aislamiento & purificación , Técnicas Biosensibles/métodos , Recombinasas/metabolismo , Humanos , Técnicas de Amplificación de Ácido Nucleico/métodos , Infecciones Estreptocócicas/diagnóstico , Infecciones Estreptocócicas/microbiología , Proteínas Bacterianas/genética , Sensibilidad y Especificidad , Proteínas Asociadas a CRISPR/genética , Endodesoxirribonucleasas
4.
Cell Signal ; 123: 111349, 2024 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-39153585

RESUMEN

Circular RNAs (circRNAs) are stable non-coding RNAs characterized by the absence of the conventional 5' cap and 3' polyadenylated tail structure. Its involvement in various aspects of cancers underscores its significance in oncology. Elevated expression of circ_0000620 was observed in both lung adenocarcinoma (LUAD) tissues and cell lines. In vitro, experiments demonstrated that the downregulation of circ_0000620 increased cisplatin sensitivity and promoted cell apoptosis while suppressing malignant characteristics such as cell migration and proliferation. Further investigation into the mechanism underlying the increased expression of circ_0000620 revealed that Methyltransferase 3, N6-Adenosine-Methyltransferase Complex Catalytic Subunit (METTL3) mediates the m6A methylation modification of circ_0000620, thereby promoting its stability and expression. Furthermore, circ_0000620 modulates the miR-216b-5p/KRAS axis to influence apoptosis and cisplatin sensitivity in both A549 and H1299 cell lines. These findings were corroborated by in vivo nude mouse experiments, which showed that knockdown of circ_0000620 inhibited tumor growth and proliferation. In summary, METTL3 plays a role in regulating the stability of circ_0000620 expression, and circ_0000620 exerts its effects on LUAD apoptosis and cisplatin sensitivity through the miR-216b-5p/KRAS signaling pathway.


Asunto(s)
Adenocarcinoma del Pulmón , Apoptosis , Cisplatino , Neoplasias Pulmonares , Metiltransferasas , Ratones Desnudos , MicroARNs , ARN Circular , Humanos , Cisplatino/farmacología , Cisplatino/uso terapéutico , MicroARNs/metabolismo , MicroARNs/genética , Metiltransferasas/metabolismo , Metiltransferasas/genética , ARN Circular/metabolismo , ARN Circular/genética , Apoptosis/efectos de los fármacos , Animales , Neoplasias Pulmonares/patología , Neoplasias Pulmonares/genética , Neoplasias Pulmonares/metabolismo , Neoplasias Pulmonares/tratamiento farmacológico , Adenocarcinoma del Pulmón/genética , Adenocarcinoma del Pulmón/patología , Adenocarcinoma del Pulmón/metabolismo , Adenocarcinoma del Pulmón/tratamiento farmacológico , Ratones , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Regulación Neoplásica de la Expresión Génica/efectos de los fármacos , Adenosina/análogos & derivados , Adenosina/metabolismo , Adenosina/farmacología , Ratones Endogámicos BALB C , Células A549 , Femenino , Masculino
5.
Foods ; 13(11)2024 May 24.
Artículo en Inglés | MEDLINE | ID: mdl-38890866

RESUMEN

The adulteration of goat milk powder occurs frequently; cattle-derived and soybean-derived ingredients are common adulterants in goat milk powder. However, simultaneously and rapidly detecting cattle-derived and soybean-derived components is still a challenge. An efficient, high-throughput screening method for adulteration detection is needed. In this study, a rapid method was developed to detect the adulteration of common cattle-derived and soybean-derived components simultaneously in goat milk powder by combining the CRISPR/Cas12a system with recombinant polymerase amplification (RPA). A dual DNA extraction method was employed. Primers and crRNA for dual detection were designed and screened, and a series of condition optimizations were carried out in this experiment. The optimized assay rapidly detected cattle-derived and soybean-derived components in 40 min. The detection limits of both cattle-derived and soybean-derived components were 1% (w/w) for the mixed adulteration models. The established method was applied to a blind survey of 55 commercially available goat milk powder products. The results revealed that 36.36% of the samples contained cattle-derived or soybean-derived ingredients, which revealed the noticeable adulteration situation in the goat milk powder market. This study realized a fast flow of dual extraction, dual amplification, and dual detection of cattle-derived and soybean-derived components in goat milk powder for the first time. The method developed can be used for high-throughput and high-efficiency on-site primary screening of goat milk powder adulterants, and provides a technical reference for combating food adulteration.

6.
Foods ; 13(9)2024 May 05.
Artículo en Inglés | MEDLINE | ID: mdl-38731787

RESUMEN

Herein, a catalytic amplification enhanced dual-signal immunochromatographic assay (ICA) based on Pt nanoparticles (Pt NPs) modified with Ti3C2Tx MXene (Ti3C2Tx@Pt) was first developed for chloramphenicol (CAP) in animal-derived foods. Due to the large specific surface area and abundant active sites of Ti3C2Tx@Pt, they can be loaded with hundreds of Pt NPs to enhance their catalytic activity, resulting in a significant increase in the detection sensitivity; the sensitivity was up to 50-fold more sensitive than the reported ICA for CAP. The LODs of the developed method for milk/chicken/fish were 0.01 µg/kg, the LOQs were 0.03 µg/kg and the recovery rates were 80.5-117.0%, 87.2-118.1% and 92.7-117.9%, with corresponding variations ranging from 3.1 to 9.6%, 6.0 to 12.7% and 6.0 to 13.6%, respectively. The linear range was 0.0125-1.0 µg/kg. The results of the LC-MS/MS confirmation test on 30 real samples had a good correlation with that of our established method (R2 > 0.98), indicating the practical reliability of the established method. The above results indicated that an ICA based on the Ti3C2Tx@Pt nanozyme has excellent potential as a food safety detection tool.

7.
Anal Chim Acta ; 1311: 342732, 2024 Jul 04.
Artículo en Inglés | MEDLINE | ID: mdl-38816157

RESUMEN

BACKGROUND: Mercury is one of the most toxic heavy metal contaminants that can be harmful to human health through the food chain. Recently, the colorimetric detection of heavy metals based on nanozyme catalytic activity has received extensive interest due to the simplicity, signal visibility and suitability for in situ detection. However, the majority of these nanozymes that can be utilized for detecting mercury with high synthesis temperature and complicated synthesis methods, which limited their practical application. RESULTS: In this work, flower-like ZnO@Pt composites were simply synthesized at room temperature, the flower-like structure and the high electron mobility of ZnO endow ZnO@Pt with stronger peroxidase-like activity. Consequently, dual-mode (UV-vis and smartphone) colorimetric sensors were designed to detect Hg2+. In UV-vis mode, the Hg2+ concentration linear range was 10-400 nM, and the limit of detection (LOD) was 0.54 nM. In smartphone mode, the Hg2+ concentration linear range was 50-1250 nM, and the LOD was 29.8 nM. A parallel analysis in 3 real water samples was confirmed by ICP-MS, the results showed good correlations (R2 > 0.98), indicating the practical reliability of these sensors. SIGNIFICANCE: The novel flower-like ZnO@Pt composites with high stability, catalytic activity and Hg2+ response were simply synthesized at room temperature, simplifying the synthesis steps and reducing costs. The sensitivity of the developed colorimetric sensor in UV-vis mode was 3-145 times higher than that of the similar methods. The colorimetric sensor in smartphone mode broadened the detection range and improved the portability of Hg2+ detection. Thus, the dual-mode (UV-vis and smartphone) colorimetric sensors providing new detection modes for rapid monitoring of Hg2+ in environmental water.

8.
Polymers (Basel) ; 16(5)2024 Mar 04.
Artículo en Inglés | MEDLINE | ID: mdl-38475378

RESUMEN

The effects of octaphenylsilsesquioxane (OPS), fumed silica, and silica aerogel on the thermal insulation properties of ethylene propylene diene monomer (EPDM) rubber were studied. On this basis, two kinds of fillers with good performances were selected to study the thermal insulation of an EPDM full-formula system. The results show that the addition of fumed silica or silica aerogel had a positive effect on the thermal insulation performance of EPDM rubber and its composite. A 30 wt% silica aerogel can be well dispersed in the EPDM rubber system and with a lower thermal conductivity compared with fumed silica. EPDM composite with 23.4 wt% fumed silica can produce more char residues at 1000 °C than at 500 °C in a burn-through test and formed the compact and porous char at 1000 °C, which had a lowest thermal conductivity. EPDM composite with fumed silica cannot be burned through 1000 °C burning, and comparison with silica aerogel revealed that it achieved the lowest back temperature and had a temperature of 388 °C after 800 s.

9.
Anal Chem ; 96(13): 5106-5114, 2024 04 02.
Artículo en Inglés | MEDLINE | ID: mdl-38490960

RESUMEN

In this work, a novel MXene-Au nanoparticle (Ti3C2@Au) was synthesized with a high molar extinction coefficient, strong fluorescence quenching ability, ultrahigh antibody affinity, high stability, and good dispersibility, and it was used to develop a colorimetric-fluorescence dual-mode lateral flow immunoassay (LFIA). The detection limits of this method for the detection of dexamethasone in milk, beef, and pork were 0.0018, 0.12, and 0.084 µg/kg in the "turn-off" mode (colorimetric signal), and 0.0013, 0.080, and 0.070 µg/kg in the "turn-on" mode (fluorescent signal), respectively, which was up to 231-fold more sensitive compared with that of the reported LFIAs. The recovery rates ranged from 81.1-113.7%, and 89.2-115.4%, with the coefficients of variation ranging from 1.4-15.0%, and 1.9-14.8%, respectively. The results of the LC-MS/MS confirmation test on 30 real samples had a good correlation with that of our established method (R2 > 0.97). This work not only developed novel nanocarriers for antibody-based LFIA but also ensured high-performance detection.


Asunto(s)
Oro , Nanopartículas del Metal , Animales , Bovinos , Colorimetría , Cromatografía Liquida , Espectrometría de Masas en Tándem , Titanio , Inmunoensayo/métodos , Límite de Detección
10.
J Asian Nat Prod Res ; 26(4): 482-488, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-37610136

RESUMEN

Two new guaiane-type sesquiterpenes, wenyujinolides A (1) and B (2), were isolated from the ethanol extract of Curcuma wenyujin, together with 10 known compounds. Their structures were established by extensive spectroscopic methods (IR, ESIMS, HRESIMS, ECD, 1D and 2D NMR) and comparison of their NMR data with literatures. Compounds 1 and 2 were evaluated for the inhibition of NO production in LPS induced RAW 264.7 macrophages.


Asunto(s)
Curcuma , Sesquiterpenos , Curcuma/química , Estructura Molecular , Óxido Nítrico , Lipopolisacáridos/farmacología , Sesquiterpenos/farmacología , Sesquiterpenos/química , Sesquiterpenos de Guayano/química
11.
J Agric Food Chem ; 71(44): 16797-16806, 2023 Nov 08.
Artículo en Inglés | MEDLINE | ID: mdl-37876184

RESUMEN

Herein, the UiO-66-NH2@quantum dot (NU66@QD) was synthesized with excellent fluorescence intensity and biocompatibility, which was used to develop a multiple immunochromatographic assay (ICA) for the detection of aflatoxin B1 (AFB1), fumonisin B1 (FB1), deoxynivalenol (DON), T-2 toxins (T-2), and zearalenone (ZEN) in cereals and feed. Five monoclonal antibodies and NU66@QD were efficiently labeled by a one-step mixed method to form a multiple detection probe. The limits of detection of the proposed NU66@QD-ICA for AFB1/FB1/DON/T-2/ZEN were 0.04/0.28/0.25/0.09/0.08 µg/kg. The recoveries ranged from 82.83-117.44%, with the coefficient of variation from 2.88-11.80%. A parallel analysis in 35 naturally contaminated cereal and feed samples was confirmed by LC-MS/MS, and the results showed a good correlation (R2 > 0.9), indicating the practical reliability of the multiple NU66@QD-ICA. Overall, the introduction of the novel nanomaterial NU66@QD provides a highly sensitive and efficient multiplex detection strategy for the development of ICA.


Asunto(s)
Micotoxinas , Puntos Cuánticos , Zearalenona , Micotoxinas/análisis , Grano Comestible/química , Cromatografía Liquida , Puntos Cuánticos/química , Reproducibilidad de los Resultados , Espectrometría de Masas en Tándem , Zearalenona/análisis , Inmunoensayo/métodos , Límite de Detección , Contaminación de Alimentos/análisis
12.
Anal Chem ; 95(44): 16366-16373, 2023 11 07.
Artículo en Inglés | MEDLINE | ID: mdl-37882488

RESUMEN

The widespread use of sulfonamide (SA) antibiotics in animal husbandry has led to residues of SAs in the environment, causing adverse effects to the ecosystem and a risk of bacterial resistance, which is a potential threat to public health. Therefore, it is highly desirable to develop simple, high-throughput methods that can detect multiple SAs simultaneously. In this study, we isolated aptamers with different specificities based on a multi-SA systematic evolution of ligands by the exponential enrichment (SELEX) strategy using a mixture of sulfadimethoxine (SDM), sulfaquinoxaline (SQX), and sulfamethoxazole (SMZ). Three aptamers were obtained, and one of them showed a similar binding to all tested SAs, with dissociation constant (Kd) ranging from 0.22 to 0.63 µM. For the other two aptamers, one is specific for SQX, and the other is specific for SDM and sulfaclozine. A label-free detection method based on the broad-specificity aptamer was developed for the simultaneous detection of six SAs, with detection of limits ranging from 0.14 to 0.71 µM in a lake water sample. The aptasensor has no binding for other broad-spectrum antibiotics such as ß-lactam antibiotics, quinolones, tetracyclines, and chloramphenicol. This work provides a promising biosensor for rapid, multiresidue, and high-throughput detection of SAs, as well as a shortcut for the preparation of different specific recognition elements required for the detection of broad-spectrum antibiotics.


Asunto(s)
Aptámeros de Nucleótidos , Técnicas Biosensibles , Animales , Antibacterianos , Aptámeros de Nucleótidos/química , Ecosistema , Sulfanilamida , Sulfadimetoxina , Sulfonamidas , Sulfaquinoxalina , Técnicas Biosensibles/métodos , Técnica SELEX de Producción de Aptámeros/métodos
13.
Mol Ther Nucleic Acids ; 34: 102026, 2023 Dec 12.
Artículo en Inglés | MEDLINE | ID: mdl-37744173

RESUMEN

Immunotherapy has become one of the most promising therapy methods for cancer, but only a small number of patients are responsive to it, indicating that more effective biomarkers are urgently needed. This study developed a pathway analysis method, named PathwayTMB, to identify genomic mutation pathways that serve as potential biomarkers for predicting the clinical outcome of immunotherapy. PathwayTMB first calculates the patient-specific pathway-based tumor mutational burden (PTMB) to reflect the cumulative extent of mutations for each pathway. It then screens mutated survival benefit-related pathways to construct an immune-related prognostic signature based on PTMB (IPSP). In a melanoma training set, IPSP-high patients presented a longer overall survival and a higher response rate than IPSP-low patients. Moreover, the IPSP showed a superior predictive effect compared with TMB. In addition, the prognostic and predictive value of the IPSP was consistently validated in two independent validation sets. Finally, in a multi-cancer dataset, PathwayTMB also exhibited good performance. Our results indicate that PathwayTMB could identify the mutation pathways for predicting immunotherapeutic survival, and their combination may serve as a potential predictive biomarker for immune checkpoint inhibitor therapy.

14.
J Agric Food Chem ; 71(28): 10787-10797, 2023 Jul 19.
Artículo en Inglés | MEDLINE | ID: mdl-37406338

RESUMEN

Aflatoxin B1 (AFB1), a potent food-borne hepatocarcinogen, is the most toxic aflatoxin that induces liver injury in humans and animals. Species-specific sensitivities of aflatoxins cannot be fully explained by differences in the metabolism of AFB1 between animal species. The gut microbiota are critical in inflammatory liver injury, but it remains to reveal the role of gut microbiota in AFB1-induced liver injury. Here, mice were gavaged with AFB1 for 28 days. Then, the modulation of gut microbiota, colonic barrier, and liver pyroptosis and inflammation were analyzed. To further verify the direct role of gut microbiota in AFB1-induced liver injury, mice were treated with antibiotic mixtures (ABXs) to deplete the microbiota, and fecal microbiota transplantation (FMT) was conducted. The treatment of AFB1 in mice altered gut microbiota composition, such as increasing the relative abundance of Bacteroides, Parabacteroides, and Lactobacillus, inducing colonic barrier dysfunction and promoting liver pyroptosis. In ABX-treated mice, AFB1 had little effect on the colonic barrier and liver pyroptosis. Notably, after FMT, in which the mice were colonized with gut microbiota from AFB1-treated mice, colonic barrier dysfunction, and liver pyroptosis and inflammation were obliviously identified. We proposed that the gut microbiota directly participated in AFB1-induced liver pyroptosis and inflammation. These results provide new insights into the mechanisms of AFB1 hepatotoxicity and pave a window for new targeted interventions to prevent or reduce AFB1 hepatotoxicity.


Asunto(s)
Aflatoxinas , Enfermedad Hepática Crónica Inducida por Sustancias y Drogas , Microbioma Gastrointestinal , Ratones , Humanos , Animales , Aflatoxina B1/toxicidad , Aflatoxina B1/metabolismo , Enfermedad Hepática Crónica Inducida por Sustancias y Drogas/metabolismo , Hígado/metabolismo , Aflatoxinas/metabolismo , Inflamación/metabolismo
15.
Ecotoxicol Environ Saf ; 262: 115154, 2023 Jun 19.
Artículo en Inglés | MEDLINE | ID: mdl-37348218

RESUMEN

Propisochlor is a chloroacetamide herbicide causing liver toxicity and suppressing immunity in human and animal. Although the herbicide has been used for years, the effects of propisochlor on intestinal health remain poorly understood. Hence, the impacts of propisochlor in intestinal health and gut microbiota were analyzed by using molecular approach and bacterial 16S rRNA sequencing. The result showed that the intake of propisochlor in mice impaired gut morphology, reduced expression of tight junction proteins, decreased thickness of mucus layer and activated pyroptosis signaling. Moreover, the exposure of propisochlor in mice led to significant alterations in gut microbial diversity and composition, including an increase of Bacteroidetes and a decrease of Firmicutes. The gut microbiota, such as Parabacteroides, Parasutterella, and Bacteroides, demonstrated a strong negative correlation with the intestinal health. These findings suggested that gut microbiota could play a critical role in the propisochlor-induced pyroptosis.

16.
Foods ; 12(9)2023 Apr 24.
Artículo en Inglés | MEDLINE | ID: mdl-37174300

RESUMEN

Pathogenic variants of Burkholderia gladioli pose a serious threat to human health and food safety, but there is a lack of rapid and sensitive field detection methods for Burkholderia gladioli. In this study, the CRISPR/Cas12a system combined with recombinant enzyme polymerase amplification (RPA) was used to detect Burkholderia gladioli in food. The optimized RPA-CRISPR/Cas12a assay was able to specifically and stably detect Burkholderia gladioli at a constant 37 °C without the assistance of large equipment. The detection limit of the method was evaluated at two aspects, the genomic DNA (gDNA) level and bacterial quantity, of which there were 10-3 ng/µL and 101 CFU/mL, respectively. Three kinds of real food samples were tested. The detection limit for rice noodles, fresh white noodles, and glutinous rice flour samples was 101 CFU/mL, 102 CFU/mL, and 102 CFU/mL, respectively, without any enrichment steps. The whole detection process, including sample pretreatment and DNA extraction, did not exceed one hour. Compared with the qPCR method, the established RPA-CRISPR /Cas12a method was simpler and even more sensitive. Using this method, a visual detection of Burkholderia gladioli that is suitable for field detection can be achieved quickly and easily.

17.
Comput Biol Med ; 159: 106969, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-37105108

RESUMEN

The Coronavirus Disease 2019 (COVID-19) pandemic is still wreaking havoc worldwide. Therefore, the urgent need for efficient treatments pushes researchers and clinicians into screening effective drugs. Drug repurposing may be a promising and time-saving strategy to identify potential drugs against this disease. Here, we developed a novel computational approach, named Drug Target Set Enrichment Analysis (DTSEA), to identify potent drugs against COVID-19. DTSEA first mapped the disease-related genes into a gene functional interaction network, and then it used a network propagation algorithm to rank all genes in the network by calculating the network proximity of genes to disease-related genes. Finally, an enrichment analysis was performed on drug target sets to prioritize disease-candidate drugs. It was shown that the top three drugs predicted by DTSEA, including Ataluren, Carfilzomib, and Aripiprazole, were significantly enriched in the immune response pathways indicating the potential for use as promising COVID-19 inhibitors. In addition to these drugs, DTSEA also identified several drugs (such as Remdesivir and Olumiant), which have obtained emergency use authorization (EUA) for COVID-19. These results indicated that DTSEA could effectively identify the candidate drugs for COVID-19, which will help to accelerate the development of drugs for COVID-19. We then performed several validations to ensure the reliability and validity of DTSEA, including topological analysis, robustness analysis, and prediction consistency. Collectively, DTSEA successfully predicted candidate drugs against COVID-19 with high accuracy and reliability, thus making it a formidable tool to identify potential drugs for a specific disease and facilitate further investigation.


Asunto(s)
COVID-19 , Humanos , Reposicionamiento de Medicamentos/métodos , SARS-CoV-2 , Reproducibilidad de los Resultados , Redes Reguladoras de Genes
18.
Comput Struct Biotechnol J ; 21: 2536-2546, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37102155

RESUMEN

Immune checkpoint inhibitor (ICI) therapy has become a powerful clinical strategy for treating melanoma. The relationship between somatic mutations and the clinical benefits of immunotherapy has been widely recognized. However, the gene-based predictive biomarkers are less stable due to the heterogeneity of cancer at the individual gene level. Recent studies have suggested that the accumulation of gene mutations in biological pathways may activate antitumor immune responses. Herein, a novel pathway mutation signature (PMS) was constructed to predict the survival and efficacy of ICI therapy. In a dataset of melanoma patients treated with anti-CTLA-4, we mapped the mutated genes into the pathways and then identified seven significant mutation pathways associated with survival and immunotherapy response, which were used to construct the PMS model. According to the PMS model, the patients in the PMS-high group showed better overall survival (hazard ratio (HR) = 0.37; log-rank test, p < 0.0001) and progression-free survival (HR = 0.52; log-rank test, p = 0.014) than those in the PMS-low group. The PMS-high patients also showed a significantly higher objective response rate to anti-CTLA-4 therapy than the PMS-low patients (Fisher's exact test, p = 0.0055), and the predictive power of the PMS model was superior to that of TMB. Finally, the prognostic and predictive value of the PMS model was validated in two independent validation sets. Our study demonstrated that the PMS model can be considered a potential biomarker to predict the clinical outcomes and response to anti-CTLA-4 therapy in melanoma patients.

19.
Environ Sci Technol ; 57(17): 7086-7096, 2023 05 02.
Artículo en Inglés | MEDLINE | ID: mdl-37071842

RESUMEN

Crystal engineering of metal oxide supports represents an emerging strategy to improve the catalytic performance of noble metal catalysts in catalytic oxidation of chlorinated volatile organic compounds (CVOCs). Herein, Pt catalysts on a TiO2 support with different crystal phases (rutile, anatase, and mixed phase (P25)) were prepared for catalytic oxidation of 1,2-dichloroethane (DCE). The Pt catalyst on P25-TiO2 (Pt/TiO2-P) showed optimal activity, selectivity, and stability, even under high-space velocity and humidity conditions. Due to the strong interaction between Pt and P25-TiO2 originating from the more lattice defects of TiO2, the Pt/TiO2-P catalyst possessed stable Pt0 and Pt2+ species during DCE oxidation and superior redox property, resulting in high activity and stability. Furthermore, the Pt/TiO2-P catalyst possessed abundant hydroxyl groups, which prompted the removal of chlorine species in the form of HCl and significantly decreased the selectivity of vinyl chloride (VC) as the main byproduct. On the other hand, the Pt/TiO2-P catalyst exhibited a different reaction path, in which the hydroxyl groups on its surface activated DCE to form VC and enolic species, besides the lattice oxygen of TiO2 for the Pt catalysts on rutile and anatase TiO2. This work provides guidance for the rational design of catalysts for CVOCs.


Asunto(s)
Titanio , Cloruro de Vinilo , Titanio/química , Oxidación-Reducción , Dicloruros de Etileno/química
20.
Food Chem ; 417: 135897, 2023 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-36924717

RESUMEN

Herein, novel multifunctional magnetic prussian blue nanoenzymes (MPBNs) and colloidal gold (CG) were synthesized and used to develop two kinds of lateral flow immunoassays (LFIAs) for the detection of 38 ß-agonists. Since MPBNs has a unique three-in-one function of colorimetric magnetic catalytic activities, the signal intensity and coupling ratio are 2 and 8-fold higher than that of the CG. The cut-off values of the CG-LFIA and MPBNs-LFIA for swine urine and pork are 5/5 and 0.3/0.5 µg/kg, the limits of detection are 0.19/0.29 and 0.02/0.03 µg/kg, respectively. The sensitivity of MPBNs-LFIA is 10-fold higher than that of CG-LFIA, and up to 200-fold higher than that of the reported LFIAs. The recoveries of the LFIAs are 80.0%-116.7%, with coefficients of variation of 1.4%-14.3%. Our study proved that the MPBNs have more advantages than CG, and can offer a promising signal label for ultrasensitive immunoassay techniques.


Asunto(s)
Nanopartículas del Metal , Carne de Cerdo , Carne Roja , Animales , Porcinos , Oro Coloide , Inmunoensayo/métodos , Fenómenos Magnéticos
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