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1.
J Mol Model ; 28(6): 139, 2022 May 07.
Artículo en Inglés | MEDLINE | ID: mdl-35524928

RESUMEN

A new force field for 1-propanol, in the united and all atom models, has been obtained by combining two different empirical methodologies. The first was developed by scaling atom charges and Lennard-Jones parameters to fit the dielectric constant, surface tension, and density; this methodology is named three steps systematic parameterization procedure (3SSPP), as reported by Pérez de la Luz et al. (J Chem Theory Comput 14:5949-5958, 2018). The second methodology consists of moving these parameters and together with the bond distance to obtain the liquid-vapor phase diagram of the CO2 molecule as discussed by Harris and Yung (J Phys Chem 99:12021-12024, 1995). The last methodology is used to obtain the self-diffusion coefficient, which was not consider in the 3SSPP. The 3SSPP/bond methodology is the 3SSPP plus the bond distance scaling. With this new methodology, the experimental density, dielectric constant, surface tension, and self-diffusion coefficient at ambient temperature could be achieved. Furthermore, we show the temperature dependence of the aforementioned properties. The static structure factors are in accordance with the experimental spectrum. Solubility is increased to the experimental value for the united atom (UA) model after applying this methodology and for all atom (AA) scheme, the experimental solubility value is maintained. Graphical abstract The reduction in bond distance of the 1-propanol molecule does not modify the structure factor.

2.
J Chem Theory Comput ; 14(11): 5949-5958, 2018 Nov 13.
Artículo en Inglés | MEDLINE | ID: mdl-30278120

RESUMEN

The Hirshfeld charges are linearly increased to reproduce the experimental dielectric constant of 10 polar solvents having values between 13 (pyridine) and 182 ( N-methylformamide). The OPLS/AA force field is used to obtain the new parameters. The surface tension and liquid density are also target properties to determine the new nonbonding parameters. The charge scaling factor is between 1.2 and 1.3. In addition, properties that were not used in the parametrization procedure, such as the heat of vaporization, self-diffusion coefficient, shear viscosity, isothermal compressibility, and volumetric expansion coefficient are obtained. Binary mixtures of amide/water and amide/amide are also studied. The original parameters of OPLS/AA, CGenFF, and GAFF force fields are evaluated. The TIP4P/ε force field is used to simulate water. The results from this work with the new parameters, for both pure components and binary mixtures, are in better agreement with experimental data than those obtained with the original values for most of the calculated properties. The maximum density of N-methylformamide in aqueous solutions is correctly predicted only with the new parameters. The high value of the dielectric constant of acetamide, formamide, and N-methylformamide is discussed in terms of the chain formation from the hydrogen bond interactions.

3.
J Phys Chem B ; 122(16): 4558-4565, 2018 04 26.
Artículo en Inglés | MEDLINE | ID: mdl-29613796

RESUMEN

Molecular dynamics simulations were carried out to obtain new force field parameters of two most commonly used anionic surfactants: sodium dodecyl sulfate and alpha olefin sulfonate. The present united atom models, of those surfactants, fail to reproduce one of the most important thermodynamic properties, the surface tension. Therefore, by scaling the Lennard-Jones parameters, the potential well (ϵ) and the length (σ), we were able to fit the experimental data. The correct micelle structure of the surfactants was also captured with the new set of parameters. The new proposed united atom models of both surfactants were tested with two different water models, TIP4P/ϵ and SPC/E, and good agreement with actual experiments was found.


Asunto(s)
Alquenos/química , Simulación de Dinámica Molecular , Dodecil Sulfato de Sodio/química , Ácidos Sulfónicos/química , Tensoactivos/química , Aniones/química , Termodinámica
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