Evaluation of growth, deposition of back fat, and loin muscle for purebred Berkshire pigs housed in bedded hoop buildings.

This study was conducted to evaluate the accretion of BW, back fat, and loin muscle from purebred Berkshire pigs raised in bedded hoop barns in Iowa. The growth of a total of 144 purebred Berkshire pigs (18 barrows and 18 gilts per trial) was evaluated from 4 trials (2 winter and 2 summer trials). Pigs were fed ad libitum utilizing a 5-phase standard corn-soybean meal feeding program that met or exceeded NRC nutrient requirements. Pigs were housed in bedded hoop barns (unheated) to approximate common niche market requirements. At 21-d intervals, pigs were serially weighed, and ultrasonic back fat depth and loin muscle area (LMA) measurements were taken. Live BW measurements began at the trial initiation at approximately 18 to 32 kg, but ultrasonic scans for 10th-rib back fat depth and LMA began at between 36 and 45 kg until market weight of about 122 ± 2.5 kg. The rate (µ) of live body growth (weight) and ultrasonic back fat depth were influenced ( < 0.01) by trial and sex, with no significant interactions between trial and sex. Both live BW and back fat deposition were significantly greater in trial 1 than all other trials (2, 3, and 4). The rate of accretion and maximum growth of LMA depth were not affected ( > 0.05) by trial and sex. Overall, barrows averaged 31 mm of back fat at 125 kg, whereas gilts had an average of about 23 mm at 121 kg of market weight. Results suggest that because of the sex differences in growth and back fat deposition between Berkshire barrows and gilts, it may be important to formulate their diets differently in commercial pork production systems.

Relationship between litters per sow per year sire breeding values and sire progeny means for farrowing rate, removal parity and lifetime born alive.

The objective of this study was to determine the relationship between individual sire estimated breeding values (EBV) for litters/sow/year (LSY) and sire progeny means for farrowing rate (FR), removal parity and lifetime born alive (LTBA). Genetic parameters and breeding values were estimated using ASREML. The heritability estimate for LSY was 0.11. When all sires with 10 or more daughters with records were included in the analysis, Spearman rank correlations between the sire's LSY EBV and the sires' daughter means for FR, removal parity and LTBA were 0.49, 0.23 and 0.25 (p < 0.01). The sire EBV for LSY was favourably correlated with sires' daughter means for all three traits. This provides evidence that selecting sires with high EBV for LSY could improve herd FR, removal parity and LTBA. By including LSY as part of the selection criterion, the LTBA may be indirectly improved. The positive genetic correlation between LTBA and LSY may be a result of the improved longevity of sows with greater LSY compared with sows with lower LSY. The relationships between LSY and FR, removal parity and LTBA are strongly supported by the correlations between the sire progeny means for each trait and the sire LSY EBV.

Factors associated with sow stayability in 6 genotypes.

The purpose of this study was to determine the association of production factors with stayability to parity 4 (STAY4) under controlled experimental conditions. Data were from 2,293 female pigs, sampled from 6 genetic lines that were entered into the National Pork Producers Council Maternal Line National Genetic Evaluation Program. Genetic lines evaluated included Newsham (NH), National Swine Registry (NSR), American Diamond Swine Genetics (ADSG), Danbred (DAN), and 2 Dekalb-Monsanto lines (DK44 and GPK347). Stepwise logistic regression was utilized in the analysis of STAY4. All effects were nested within genetic line. Categorical effects in the model were arrival date to the wean-to-finish unit (entry date) and breed-gestation-farrowing facility (farm). Continuous effects in the model were gilt backfat, LM depth, ADG, age at puberty, age at first farrowing, and traits recorded before the last litter of the sow (prefarrow backfat, number born alive, number weaned, litter weaning weight, lactation feed intake, lactation backfat loss, and lactation length). Factors significant for STAY4 included farm, entry date, age at first farrowing, ADG, gilt backfat, and lactation before removal effects, as well as feed intake, number born alive, and lactation length. Age at first farrowing and lactation feed intake affected all genetic lines. Regression coefficients for STAY4 on age at first farrowing were -0.014, -0.022, -0.017, -0.016, -0.011, and -0.021 (all P < 0.05), respectively, for NH, NSR, ADSG, DK44, GPK347, and DAN genetic lines. Regression coefficients for STAY4 on lactation feed intake were 0.043, 0.049, 0.051, 0.061, 0.120, and 0.097 (all P < 0.05), respectively, for NH, NSR, ADSG, DK44, GPK347, and DAN females. Age at puberty, age at first farrowing, and lactation feed intake had the greatest effect on STAY4.

Identification of genetic markers for productive life in commercial sows.

Escalating replacement rates and production costs warrant attention on sow productive life (SPL). Increasing average SPL by one-tenth of 1 parity would result in an annual revenue increase of over $15 million in the United States. Research in model organisms has revealed conserved genes and gene pathways that lead to longer lifespan. The most prominent gene pathways are those involved in growth, most notably genes in the IGF pathway that serve to mimic the response of caloric restriction. The objective of this research was to test the hypothesis that these well conserved genes and gene pathways could also play a role in SPL, even though the productive life of sows is both a measure of longevity and their reproductive performance. Preliminary research on 3 distinct populations of over 2,000 animals suggested that several genes were associated with components of SPL. Genetic markers were then analyzed against the corresponding records of the sows for reproductive and longevity traits using a validation population of 2,000 commercial females. Right censored data were used to test associations of genetic markers with survival to defined time points. Three distinct models of survival analysis were implemented using nonparametric estimates of the survival distribution in a sequential order, using a parametric accelerated failure time model with a Weibull distribution of the error term, and a Cox proportional hazards model, which is a semiparametric model that uses an unspecified baseline hazard function. The genetic markers CCR7 and CPT1A were significantly associated (P < 0.05) with survival using the nonparametric model and tended (P < 0.1) toward significance using the parametric and semiparametric models with significantly different effects (P < 0.05) between some genotype classes. Genetic markers for MBL2, IGFBP3, and WARS2 also tended (P < 0.1) toward significance for survival traits, but were not consistent. Mixed model analyses were used to determine the associations of these genetic markers with reproductive traits. The genetic markers for IGFBP1, MBL2, CPT1A, CCR7, SLC22A5, and ACE were significantly (P < 0.05) associated with at least 1 reproductive trait. These results show that molecular markers should be considered for use in marker-assisted selection to improve SPL.

Deposition rates and accretion patterns of intramuscular fat, loin muscle area, and backfat of Duroc pigs sired by boars from two time periods.

A study was conducted to evaluate differences in performance and in carcass composition and tissue deposition rates between purebred Duroc pigs sired by boars currently available and those sired by boars from the mid-1980s. Two lines were developed by randomly allocating littermate and half-sib pairs of females to matings by current time period (CTP) or old time period (OTP) boars. Pigs from 2 replications were placed on test at a group mean BW of 63.5 kg. Serial ultrasonic measurements of the 10th-rib LM area (LMA), off-midline backfat (BF10), and intramuscular fat percentage (IMF) were collected every 2 wk in the first replication and used to assess deposition rate differences. Off-test ultrasonic LMA, BF10, and IMF measurements from a total of 557 pigs from 23 CTP sires and 232 pigs from 15 OTP sires across 2 replications and at a mean BW of 109 kg were evaluated. All available barrows and randomly selected gilts (n = 277) were sent to a commercial abattoir, and carcass measurements of 10th-rib backfat, last-rib backfat, last lumbar backfat, and LMA were collected. Analysis of serial backfat measurements revealed a linear relationship between back-fat and BW between 73 and 118 kg for pigs from both time periods. Pigs sired by OTP boars deposited more backfat (P < 0.05) at a faster rate than pigs sired by CTP boars over the entire test period. A curvilinear cumulative tissue deposition pattern was revealed for ultrasonically estimated LMA and IMF within both time periods. Significant linear and quadratic regression coefficient differences between lines indicated that pigs sired by CTP boars deposited more LMA and less IMF per kilogram of BW gain than pigs sired by OTP boars. Pigs sired by CTP boars had more LMA and less BF10 (P < 0.05), whereas pigs sired by OTP boars had more IMF (P = 0.04). Carcass evaluation revealed more (P < 0.01) carcass measurements of LMA and less (P < 0.05) carcass measurements of 10th-rib backfat, carcass measurements of last-rib backfat, and carcass measurements of last lumbar backfat for pigs sired by CTP boars. No difference (P > 0.05) between the time periods was found for ADG over the entire test period. Results from this study illustrate that significant progress in carcass composition has been realized within the Duroc breed since the mid-1980s. The long-term selection response in carcass leanness has also resulted in changes in deposition rates of correlated traits such as LMA and IMF.

Performance of gestating sows in bedded hoop barns and confinement stalls.

The effects of gestation housing systems on sow and litter performance were evaluated for 2.5 yr in southwest Iowa. Gestation housing system treatments were as follows: 1) individual gestation stalls in a mechanically ventilated confinement building with a partially slatted floor and a manure flush system and 2) group pens with individual feed stalls in deep-bedded, naturally ventilated hoop barns. In all, 957 litters from 353 sows were evaluated. Number of pigs born alive per litter differed for the 2 housing treatments (P = 0.002). Sows gestated in hoop barns gave birth to more live pigs per litter (10.0 +/- 0.2 pigs) than sows gestated in stalls (9.3 +/- 0.2 pigs). Preweaning mortality was not different for the 2 housing treatments (P = 0.70). Cross-fostering was done to equalize litter size within 24 h of birth, which resulted in an equal number of weaned pigs per sow (P = 0.50) regardless of gestation housing treatment. The weaning-to-breeding interval was different (P = 0.01), with sows kept in stalls (4.3 +/- 0.6 d) returning to estrus sooner than sows gestated in hoop barns (6.0 +/- 0.6 d). These results indicate that gestating sows can be housed as groups in deep-bedded hoop barns equipped with individual feeding stalls and will perform comparably to gestating sows housed in confinement systems with individual gestation stalls.

National Pork Producers Council Maternal Line National Genetic Evaluation Program: a comparison of sow longevity and trait associations with sow longevity.

Data from the National Pork Producers Council Maternal Line National Genetic Evaluation Program were used to compare longevity of sows from 6 commercial genetic lines and to estimate the phenotypic associations of sow longevity with gilt backfat thickness, ADG, age at first farrowing, litter size at first farrowing, litter weight at first farrowing, average feed intake during lactation, and average backfat loss during lactation. The lines evaluated were American Diamond Genetics, Danbred North America, Dekalb-Monsanto DK44, Dekalb-Monsanto GPK347, Newsham Hybrids, and National Swine Registry. The data set contained information from 3,251 gilts, of which 17% had censored longevity records (sows lived longer than 6 parities). The line comparison was carried out by analyzing all lines simultaneously. Because the survival distribution functions differed among genetic lines, later analyses were carried out separately for each genetic line. All analyses were based on the non-parametric proportional hazard (Cox model). Dekalb-Monsanto GPK347 sows had a lower risk of being culled than sows from the other lines. Moreover, the shape of the survival distribution function of the Delkab-Monsanto GPK347 line was different from the other 5 lines. The Dekalb-Monsanto 347 line had lower culling rates because they had lower gilt reproductive failure before the first parity than gilts from the other lines. Within line, sows with lower feed intake and greater backfat loss during lactation had a shorter productive lifetime. Thus, producers should implement management practices having positive effects on sow lactation feed intake. Additionally, the swine genetics industry is challenged to simultaneously improve efficiency of gain of their terminal market pigs and to obtain high feed intake during lactation of their maternal lines for future improvement of sow longevity. Recording sow feed intake and backfat loss during lactation in nucleus and multiplication breeding herds should be considered. Between-line differences in this study indicate that it is possible to select for sow longevity, but more research is needed to determine the most efficient selection methods to improve sow longevity.

Effect of long-term selection for increased leanness on meat and eating quality traits in Duroc swine.

A study was conducted to evaluate differences in meat and eating quality traits between purebred Duroc pigs sired by boars currently available and pigs sired by boars from the mid 1980s. Two lines were developed by randomly allocating littermate and half-sib pairs of females to matings by current time period (CTP) or old time period (OTP) boars. Matings by CTP boars were made using fresh semen, and matings by OTP boars were via frozen semen. All available barrows and randomly selected gilts were sent to a commercial abattoir and used for meat and eating quality evaluation. A total of 178 pigs from 23 CTP sires and 99 pigs from 15 OTP sires, across 2 replications and at a mean live weight of 109 kg, were slaughtered and analyzed. Chemical intramuscular fat percentage was determined by lab analysis of a slice from the LM at the 10th rib. Additional meat and eating quality traits measured on the LM were Minolta reflectance and Hunter L color (24 h); pH (24 h and 7 d); water-holding capacity; subjective visual scores for color, marbling, and firmness (48 h); Instron tenderness; cooking loss; and trained sensory panel evaluations (7 d). Time period differences were assessed by use of a mixed model that included fixed effects of sire time period, replication, sex, contemporary group, and the interaction of sex x time period. The random effect of dam and the random effect of sire nested within time period were also included. Loins from pigs sired by OTP boars had greater intramuscular fat (3.48 vs. 3.09%) and visual marbling scores (3.54 vs. 3.07), required less Instron force (5.31 vs. 5.98 kg) to compress, and had darker visual color scores (4.09 vs. 3.87) compared with loins from pigs sired by CTP boars (P < 0.05). No differences were observed between time periods for Minolta reflectance, Hunter L (24 h), water-holding capacity, pH (24 h and 7 d), or subjective firmness scores. Trained sensory evaluations revealed more pork flavor and less off-flavor (P < 0.05) for OTP-sired pigs; however, no differences in tenderness score, juiciness score, chewiness score, or cooking loss were found between lines. Long-term selection response in carcass composition has been at the expense of meat and eating quality traits.

Comparison of grain sources for swine diets and their effect on meat and fat quality traits.

A study was conducted to evaluate the effect of dietary grain sources on various compositional and quality characteristics of pork from pigs reared in a commercial environment. Pigs were fed 1 of 5 dietary treatments containing the following single or blended grain sources throughout most of the grow-finish period: 1) yellow corn, 2) white corn, 3) 1/3 yellow corn and 2/3 white corn, 4) 2/3 yellow corn and 1/3 white corn, and 5) barley. Pigs were from 2 sire genetic types, Duroc and Hampshire x Duroc, mated to PIC 1055 females. A total of 1,040 pigs were included in the study in a 2 x 2 x 5 factorial arrangement with 2 genetic types, 2 sexes (barrows and gilts), and 5 dietary treatments. Eight pigs were randomly selected from each pen of 26 (n = 320) for meat and fat quality evaluation. Pigs were 27.6 kg at the beginning of the experiment and were fed to 130.2 kg. All animals were held overnight at a commercial abattoir before slaughter. One whole, skin-on, boneless loin was collected from each carcass and held at -1 degrees C in a cryovac-sealed bag at the Iowa State University Meat Laboratory. At 25 to 27 d postslaughter, loins were evaluated for meat and fat quality. Dietary treatment had no effect (P > 0.05) on 24-h pH, sensory tenderness, sensory chewiness, Instron tenderness, loin purge, or cook loss. At 25 to 27 d postslaughter, pigs fed diet 4 had a greater (P < 0.05) loin pH than pigs fed diet 1, and diets 2, 3, and 5 were not different from all treatment means. Pigs fed diet 4 had a greater (P < 0.05) Japanese color score than pigs fed diets 2, 3, and 5, and diet 1 was not different from all treatment means. Pigs fed diet 3 had a greater percentage of intramuscular fat than pigs fed diets 1 and 2, although diets 1, 4, and 5 and diets 1, 2, and 5 were not different (P > 0.05). No differences among dietary treatments were found for fat color values on a subjective basis. Pigs fed diet 5 had a more desirable objective fat color than pigs fed all white corn, and diets 1, 3, and 4 were not different (P > 0.05). Pigs fed diet 5 had greater levels of SFA and MUFA, and lower levels of unsaturated fatty acids and PUFA, in the subcutaneous fat than pigs fed all other diets. These results indicate that the energy sources evaluated in this study had little effect on eating quality of pork that was held for 25 to 27 d postslaughter.

Variance components and heritabilities for sow productivity traits estimated from purebred versus crossbred sows.

Genetic parameters were estimated for number of pigs born alive (NBA), adjusted litter weaning weight (ALWT), and the interval from weaning to first service (W2E) using 2002 purebred litter records and 14 583 crossbred litter records from a swine production unit with a defined great-grandparent, grandparent, and parent stock genetic system structure. Estimation of (co)variance components was carried out by REML methods. Heritability estimates from this study for NBA were 0.155, 0.146, 0.145 for the purebred, crossbred, and pooled data, respectively. Heritability estimates for ALWT were 0.162, 0.195, and 0.183 for the purebred, crossbred and pooled data, respectively. Heritability estimates for W2E were 0.205, 0.239 and 0.202 for the purebred, crossbred and pooled data, respectively. Genetic correlations between NBA and ALWT were weak and positive for the three groups. The genetic correlation between W2E and ALWT were -0.158 for the purebred Yorkshires, 0.031 for the crossbreds and 0.051 for the pooled data. The genetic correlation between W2E and NBA was -0.027 for the purebred Yorkshires, 0.310 for the crossbreds and 0.236 for the pooled data. These similarities suggest that pooling of purebred and crossbred data may be considered, which may potentially increase the accuracy of breeding value estimates, which would result in increased genetic progress.

National Pork Producers Council Maternal Line Genetic Evaluation: a comparison of growth and carcass traits in terminal progeny.

The objective of this study was to compare growth and carcass traits of 1,252 progeny of six commercially available dam lines included in the National Pork Producers Council Maternal Line Evaluation Project. Lines compared included one maternal line supplied by each of American Diamond Swine Genetics (ADSG), Danbred NA (DB), two lines supplied by Monsanto Choice Genetics (DK and GPK347), Newsham Hybrids (NH), and Landrace x Large White females supplied by the National Swine Registry (NSR). All females were mated to DB, Duroc-Hampshire terminal sires. Traits analyzed were ADG from 56 to 115 kg live weight, days to 115 kg, backfat thickness measured at the 10th rib, carcass length, dressing percent, and 10th-rib LM area. Carcass traits were adjusted to a carcass weight of 85 kg. The statistical model included fixed effects of maternal line, sex, farrowing group, and finishing unit (farm). All two-way interactions among main effects were tested and removed from final models because they were not significant. In addition, because they were not significant, effects of farm and farrowing group were removed from models for carcass length and 10th-rib backfat thickness, and farm was removed from the model for LM area. Least squares means for ADG ranged from 0.74 to 0.79 kg/d. The GPK347 line had lower ADG and greater days to 115 kg than all other lines (P < 0.05). The ADSG (P < 0.05) and NH (P < 0.01) progeny had lower ADG than DK progeny. The DK line had the fewest days to 115 kg (P < 0.05). Progeny for the DB and NH lines had the least 10th-rib backfat, differing from ADSG, DK, and GPK347 (P < 0.05). Pigs from DB females had the greatest dressing percent, differing from ADSG, DK, GPK347, and NH (P < 0.05). The GPK347 had a lower dressing percent than all other lines (P < 0.05). Progeny of DB females had the greatest LM area, differing from ADSG, DK, GPK347, and NSR (P < 0.05). Offspring from ADSG and GPK347 had the smallest LM area; however, GPK347 and NSR did not differ. Differences in carcass length were statistically significant; however, actual differences were small. Economic weights for these traits relative to reproductive traits must be considered in integrated economic analyses to properly compare differences among lines in net economic value for specific markets.

Evaluation of procedures to predict fat-free lean in swine carcasses.

The objectives were to develop equations for predicting fat-free lean in swine carcasses and to estimate the prediction bias that was due to genetic group, sex, and dietary lysine level. Barrows and gilts (n = 1,024) from four projects conducted by the National Pork Board were evaluated by six procedures, and their carcass fat-free lean was determined. Pigs of 16 genetic groups were fed within weight groups one of four dietary regimens that differed by 0.45% in lysine content and slaughtered at weights between 89 and 163 kg. Variables in equations included carcass weight and measures of backfat depth and LM. Fat-free lean was predicted from measures of fat and muscle depth measured with the Fat-O-Meater (FOM), Automated Ultrasonic System (AUS), and Ultrafom (UFOM) instruments, carcass 10th-rib backfat and LM area (C10R), carcass last-rib backfat (CLR), and live animal scan of backfat depth and LM area with an Aloka 500 instrument (SCAN). Equations for C10R (residual standard deviation, RSD = 2.93 kg) and SCAN (RSD = 3.06 kg) were the most precise. The RSD for AUS, FOM, and UFOM equations were 3.46, 3.57, and 3.62 kg, respectively. The least precise equation was CLR, for which the RSD was 4.04 kg. All procedures produced biased predictions for some genetic groups (P < 0.01). Fat-free lean tended to be overestimated in fatter groups and underestimated in leaner ones. The CLR, FOM, and AUS procedures overestimated fat-free lean in barrows and underestimated it in gilts (P < 0.01), but other procedures were not biased by sex. Bias due to dietary lysine level was assessed for the C10R, CLR, FOM, and SCAN procedures, and fat-free lean in pigs fed the lowlysine dietary regimen was overestimated by CLR, FOM, and SCAN (P < 0.05). Positive regressions of residuals (measured fat-free lean minus predicted fat-free lean) on measured fat-free lean were found for each procedure, ranging from 0.204+/-0.013 kg/kg for C10R to 0.605+/-0.049 kg/kg for UFOM, indicating that all procedures overestimated fat-free lean in fat pigs and underestimated it in lean pigs. The pigs evaluated represent the range of variation in pigs delivered to packing plants, and thus the prediction equations should have broad application within the industry. Buying systems that base fat-free lean predictions on measures of carcass fat depth and muscle depth or area will overvalue fat pigs and undervalue lean pigs.

The National Pork Producers Council Maternal Line National Genetic Evaluation Program: a comparison of six maternal genetic lines for female productivity measures over four parities.

Litter (n = 8,424) and female performance records were collected in two breed-to-wean production units in order to evaluate genetic line differences for sow longevity and maternal performance over four parities. Lines evaluated were American Diamond Genetics, Danbred North America, Dekalb-Monsanto DK44, Dekalb-Monsanto GPK347, Newsham Hybrids, and National Swine Registry. Females within a line were derived from a minimum of 65 sires, 197 dams (three dams per sire), and a maximum of three daughters per dam, except in the GPK347, which were produced using semen from 12 Nebraska Index boars mated with Dekalb-Monsanto Line 34 females. All lines expressed 100% maternal heterosis. Mixed model statistical procedures were used with fixed effects including genetic line, parity, production unit, and two-way interactions. Random effects included a contemporary week of production and female for repeated records. Lactation length (average 15 d) was included as a linear covariate where appropriate. In total, 3,599 females entered as early-weaned pigs, 3,283 entered the breeding herd, 2,592 farrowed at least a single litter, and 1,656 and completed four parities. Line (P < 0.001) and parity (P < 0.001) effects were observed for virtually all traits measured. Ranges of genetic line differences averaged across parities were 1.76 pigs for total born, 1.45 pigs born alive, and 0.31 stillborn pigs per litter. Ranges of line differences in total and live litter weight were 1.4 and 1.3 kg, respectively. Ranges among lines, within Parities 1 through 4, for litter size at weaning were 0.56, 1.08, 0.91, and 0.64 pigs per litter, respectively. Line differences for weight (33.8 kg) and backfat depth (6.4 mm) at farrowing, lactation feed intake (8.7 kg), weight loss (5.0 kg), and backfat loss (0.87 mm) were observed. Extended wean-to-estrus interval was related to variation in weight, feed intake, and backfat loss in all lines except the GPK347. The GPK347 females farrowed and weaned the largest number of pigs, ate less feed in lactation, and lost more backfat and weight during lactation, yet they had the largest litters and the shortest wean-to-estrus intervals. Line x parity interactions existed for many traits due to small rank changes, but in general, the high- and low-ranked lines did not change. Genetic line differences in reproductive efficiency through four parities exist and must be recognized when choosing a female line.

Design and standards for genetic evaluation of swine seedstock populations.

The purpose of this article is to describe a program for evaluation of seedstock populations in the swine industry. Differences among seedstock populations for economically important traits must be identified in order for pork producers to efficiently use available genetic resources. National genetic evaluation programs have the potential to identify the important differences among populations and to increase the rate of genetic improvement in a population. Program results provide performance benchmarks that stimulate testing and selection procedures by seedstock suppliers that further increase the rate of genetic improvement. A Terminal Sire Line Genetic Evaluation Program was designed and conducted in the United States by the National Pork Producers Council (Des Moines, IA) to compare seedstock populations for use in crossbreeding systems. High levels of statistical accuracy for program results were established; the ability to detect differences of 0.25 SD per trait, a power of test of 75%, and a 5% significance level were selected. Pure breeds and breeding company sire lines were nominated for the program. Semen was collected from nominated boars and distributed to cooperating commercial producers during eight 1-wk breeding periods. Pigs were produced in 136 commercial herds and transported to testing facilities at 8 to 23 d of age. Nine of the 11 sire lines originally entered in the program completed the sampling requirements for statistical analysis. High levels of statistical accuracy and a large, representative sample of boars with restrictions on genetic relationships ensured that the program results included unbiased, highly accurate sire line data for growth, carcass, meat quality, and eating quality traits of economic importance. This program has shown commercial producers that they have several choices of sire lines for changing their crossbreeding programs in desired trait areas. Commercial product evaluation must be an ongoing process, and this program serves as a model for future testing and evaluation of diverse genetic seedstock populations.

Genetic correlations between lean growth and litter traits in U.S. Yorkshire, Duroc, Hampshire, and Landrace pigs.

The objective of this study was to estimate breed-specific genetic correlations between lean growth and litter traits for four U.S. swine breeds. Records for lean growth and litter traits on Yorkshire, Duroc, Hampshire, and Landrace pigs collected between 1990 and April 2000 in herds on the National Swine Registry Swine Testing and Genetic Evaluation System were analyzed. A bivariate animal model and restricted maximum likelihood procedures were used to estimate genetic and environmental correlations between lean growth rate, days to 113.5 kg, backfat, and loin muscle area with litter traits of number born alive, litter weight at 21 d, and number weaned. Most genetic correlation estimates between lean growth and litter traits were small in magnitude and consistent across breeds. Backfat had the largest within-breed genetic correlations with number born alive (0.18 to 0.20) and litter weight at 21 d (-0.27 to -0.30). Estimates of genetic correlations between lean growth traits and number weaned were very small. Estimates of the environmental correlations between lean growth and litter traits also were very small for all traits and for all four breeds. Results indicate that selection for lean growth traits could have a long-term effect on litter traits. Including lean growth traits in a maternal-line evaluation using a multiple-trait model could increase the accuracy of the genetic evaluation for litter traits.

Evaluation of strategies for selection for lean growth rate in pigs.

Lean growth rate (LGR) in pigs is a nonlinear biological function of growth rate and lean quantity. According to animal breeding theory, genetic progress for LGR is maximized with selection on a linear index of its component traits, but selection on direct EBV for LGR is also common. In this study, the performance of five criteria for selection on estimated LGR in pigs was evaluated through simulation over five generations: linear indexes of multiple-trait EBV of component traits with or without updating index weights in each generation; a nonlinear index of multiple-trait EBV of component traits; and direct selection on EBV for LGR from a single-trait model or a multiple-trait model that included LGR and component traits. The nonlinear index yielded the highest response in LGR in Generation 5, but the linear index with updating performed almost as well. Not updating weights for the linear index reduced response in LGR by 1.1% in Generation 5 (P < 0.05). Direct selection on single-trait EBV for LGR yielded the lowest responses in Generation 5. Direct selection on EBV for LGR from a multiple-trait animal model yielded a 3.1% greater response in LGR in Generation 5 than direct selection on EBV for LGR based on a single-trait animal model (P < 0.05), but yielded a 1.9% lower response than the nonlinear index. Although differences in response in LGR were limited, alternative selection criteria resulted in substantially different responses in component traits. Linear index selection for LGR placed more emphasis on lean quantity, whereas direct selection for LGR emphasized growth rate. Based on the relative changes in the responses in LGR, selection for estimated LGR based on a nonlinear index or a linear index with updating is recommended for use in the swine industry.

Genetic parameters and trends for litter traits in U.S. Yorkshire, Duroc, Hampshire, and Landrace pigs.

Records on 251,296 Yorkshire, 75,262 Duroc, 83,338 Hampshire, and 53,234 Landrace litters born between 1984 and April of 1999 in herds on the National Swine Registry Swine Testing and Genetic Evaluation System were analyzed. Animal model and restricted maximum likelihood procedures were used to estimate variances of animal genetic (a), maternal genetic (m), permanent environmental, and service sire, and the covariances between a and m for number born alive (NBA), litter weight at 21 d (L21WT), and number weaned (NW). Fixed effects of contemporary groups were included in the analysis. Based on a single-trait model, estimates of heritabilities were 0.10, 0.09, 0.08, and 0.08 for NBA; 0.08, 0.07, 0.08, and 0.09 for L21WT; and 0.05, 0.07, 0.05, and 0.05 for NW in the Yorkshire, Duroc, Hampshire, and Landrace breeds, respectively. Estimates of maternal genetic effects were low and ranged from 0.00 to 0.02 for all traits and all breeds. Estimates of permanent environmental effects ranged from 0.03 to 0.08. Estimates of service sire effects ranged from 0.02 to 0.05. A bivariate analysis was used to estimate the genetic correlations among traits. Average genetic correlations over the four breeds were 0.13, 0.15, and 0.71 for NBA with L21WT, NBA with NW, and L21WT with NW, respectively. Average genetic trends were 0.018 pigs/yr, 0.114 kg/yr, and 0.004 pigs/yr for NBA, L21WT, and NW, respectively. Although estimates of heritabilities for litter traits were low and similar across breeds, genetic variances for litter traits were sufficiently large to indicate that litter traits could be improved through selection. This study presents the first set of breed-specific estimates of genetic parameters available from large numbers of field records. It provides information for use in national genetic evaluations.

Joint evaluation of purebreds and crossbreds in swine.

Data from two purebred swine lines A (n = 6,022) and B (n = 24,170), and their reciprocal, cross C (n = 6,135), were used to examine gains in reliability of combined purebred and crossbred evaluation over conventional within-line evaluations using crossbred and pureline models. Random effects in the pureline model included additive, parental dominance, and litter. In the crossbred model, effects were as in the pureline model except traits of each line were treated as separate traits and two additive effects were present. The approximate model was the same as the pureline except it was used for all lines disregarding breed differences. The traits in the evaluation were lifetime daily gain (LDG) and backfat. When separate line evaluations were replaced by evaluations with crossbreds, mean reliabilities of predicted breeding values increased by 2 to 9% for purebreds and by 21 to 72% for crossbreds. Rank correlations between these breeding values were > 0.99 for purebreds but 0.85 to 0.87 for crossbreds. Rank correlations between predicted breeding values obtained from crossbred and approximate models were 0.98 to 0.99 for purebreds and 0.96 to 0.98 for crossbreds. When the number of crossbreds was small in comparison to purebreds, the increase in reliability by using the crossbred data and the crossbred model as opposed to purebred models was small for purebreds but large for crossbreds. The approximate model provided very similar rankings to the crossbred model for purebreds but rankings were less consistent for crossbreds.

Genetic parameters and trends for lean growth rate and its comvonents in U.S. Yorkshire, Duroc, Hampshire, and Landrace pigs.

Records on 361,300 Yorkshire, 154,833 Duroc, 99,311 Hampshire, and 71,097 Landrace pigs collected between 1985 and April of 2000 in herds on the National Swine Registry Swine Testing and Genetic Evaluation System were analyzed. Animal model and REML procedures were used to estimate random effects of animal genetic, common litter, maternal genetic, and the covariances between animal and maternal for lean growth rate (LGR), days to 113.5 kg (DAYS), backfat adjusted to 113.5 kg (BF), and loin eye area adjusted to 113.5 kg (LEA). Fixed effects of contemporary group and sex were also in the statistical model. Based on the single-trait model, estimates of heritabilities were 0.44, 0.44, 0.46, and 0.39 for LGR; 0.35, 0.40, 0.44, and 0.40 for DAYS; 0.48, 0.48, 0.49, and 0.48 for BF; and 0.33, 0.32, 0.35, and 0.31 for LEA in the Yorkshire, Duroc, Hampshire, and Landrace breeds, respectively. Estimates of maternal genetic effects were low and ranged from 0.01 to 0.05 for all traits across breeds. Estimates of common litter effects ranged from 0.07 to 0.16. A bivariate analysis was used to estimate the genetic correlations between lean growth traits. Average genetic correlations over four breeds were -0.83, -0.37, 0.44, -0.07, 0.08, and -0.37 for LGR with DAYS, BF, and LEA, DAYS with BF and LEA, and BF with LEA, respectively. Average genetic trends were 2.35 g/yr, -0.40 d/yr, -0.39 mm/yr, and 0.37 cm2/yr for LGR, DAYS, BF, and LEA, respectively. Results indicate that selection based on LGR can improve leanness and growth rate simultaneously and can be a useful biological selection criterion.

Genetic parameters for pork carcass components.

Data from 456 homozygous halothane normal purebred Yorkshire, Duroc, and Other-breed pigs from two national progeny testing and genetic evaluation programs were utilized to estimate genetic parameters for carcass components in pigs. Carcass components were cut and weighed according to Institutional Meat Purchase Specifications. Primal cut weights evaluated included 401 Ham (HAM), 410 Loin (LOIN), 405 Picnic shoulder (PIC), 406 Boston Butt (BB), and 409 Belly (BELLY). Individual muscle weights included the inside (INS), outside (OUT), and knuckle (KNU) muscles of the ham, the longissimus dorsi (LD) and psoas major (TEND) of the loin, and the boneless components of both the Boston Butt (BBUTT) and picnic (BPIC). Muscle weights from each primal were summed to yield a boneless subprimal weight (BHAM, BLOIN, BSHLDR), and all boneless subprimals were summed to yield total primal boneless lean (LEAN). Heritability estimates for HAM, LOIN, and BELLY were 0.57, 0.51, and 0.51, respectively. Heritability estimates for BB and PIC were 0.09 and 0.21, respectively. Heritability estimates for the boneless components of each primal were higher than those for the intact primals. Genetic correlations for HAM, LOIN, and PIC with loin muscle area (LMA) were 0.53, 0.78, and 0.70, respectively, and-0.62, -0.51, and -0.60, respectively, with 10th rib off-midline backfat (BF10). Boneless subprimal components were highly correlated with LEAN. Gilts had heavier weights (P < 0.01) than barrows for all boneless subprimals, individual muscles, LEAN, and for all primal cuts except BELLY. Gilts also had less BF10 and more LMA (P < 0.01) than barrows. Duroc pigs had a heavier (P < 0.01) weight for HAM and PIC when compared to Yorkshires. Yorkshire pigs had more (P < 0.01) LOIN weight than did the Durocs. Results suggest primal, boneless subprimal, and individual muscle weights in pigs should respond favorably to selection.