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1.
New Phytol ; 232(2): 928-940, 2021 10.
Artículo en Inglés | MEDLINE | ID: mdl-34270808

RESUMEN

The evolution of herbicide resistance in weeds is an example of parallel evolution, through which genes encoding herbicide target proteins are repeatedly represented as evolutionary targets. The number of herbicide target-site genes differs among species, and little is known regarding the effects of duplicate gene copies on the evolution of herbicide resistance. We investigated the evolution of herbicide resistance in Monochoria vaginalis, which carries five copies of sulfonylurea target-site acetolactate synthase (ALS) genes. Suspected resistant populations collected across Japan were investigated for herbicide sensitivity and ALS gene sequences, followed by functional characterization and ALS gene expression analysis. We identified over 60 resistant populations, all of which carried resistance-conferring amino acid substitutions exclusively in MvALS1 or MvALS3. All MvALS4 alleles carried a loss-of-function mutation. Although the enzymatic properties of ALS encoded by these genes were not markedly different, the expression of MvALS1 and MvALS3 was prominently higher among all ALS genes. The higher expression of MvALS1 and MvALS3 is the driving force of the biased representation of genes during the evolution of herbicide resistance in M. vaginalis. Our findings highlight that gene expression is a key factor in creating evolutionary hotspots.


Asunto(s)
Acetolactato Sintasa , Herbicidas , Acetolactato Sintasa/genética , Expresión Génica , Resistencia a los Herbicidas/genética , Herbicidas/farmacología , Proteínas de Plantas/genética , Malezas/genética
2.
Int J Biol Macromol ; 183: 1861-1870, 2021 Jul 31.
Artículo en Inglés | MEDLINE | ID: mdl-34089758

RESUMEN

Tyrosinase (Ty) and catechol oxidase (CO) are members of type-3 copper enzymes. While Ty catalyzes both phenolase and catecholase reactions, CO catalyzes only the latter reaction. In the present study, Ty was found to catalyze the catecholase reaction, but hardly the phenolase reaction in the presence of the metallochaperon called "caddie protein (Cad)". The ability of the substrates to dissociate the motif shielding the active-site pocket seems to contribute critically to the substrate specificity of Ty. In addition, a mutation at the N191 residue, which forms a hydrogen bond with a water molecule near the active center, decreased the inherent ratio of phenolase versus catecholase activity. Unlike the wild-type complex, reaction intermediates were not observed when the catalytic reaction toward the Y98 residue of Cad was progressed in the crystalline state. The increased basicity of the water molecule may be necessary to inhibit the proton transfer from the conjugate acid to a hydroxide ion bridging the two copper ions. The deprotonation of the substrate hydroxyl by the bridging hydroxide seems to be significant for the efficient catalytic cycle of the phenolase reaction.


Asunto(s)
Catecol Oxidasa/química , Catecol Oxidasa/metabolismo , Monofenol Monooxigenasa/química , Monofenol Monooxigenasa/metabolismo , Streptomyces/enzimología , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Sitios de Unión , Catálisis , Dominio Catalítico , Catecol Oxidasa/genética , Cristalografía por Rayos X , Enlace de Hidrógeno , Metalochaperonas/metabolismo , Modelos Moleculares , Monofenol Monooxigenasa/genética , Mutación , Unión Proteica , Conformación Proteica , Streptomyces/genética , Especificidad por Sustrato , Agua/química
3.
Arch Biochem Biophys ; 688: 108370, 2020 07 30.
Artículo en Inglés | MEDLINE | ID: mdl-32380017

RESUMEN

Hemocyanin (Hc) and phenoloxidase (PO) are members of the type 3 copper protein family. Although arthropod Hc and PO exhibit similar three-dimensional structures of the copper-containing active site, Hc functions as an oxygen transport protein, showing minimal or no phenoloxidase activity. Here, we present the crystal structure of the oxy form of Hc from Panulirus japonicus (PjHc) at 1.58 Å resolution. The structure of the di-copper active site of PjHc was found to be almost identical to that of PO. Although conserved amino acids and the water molecule crucial for the enzymatic activity were observed in PjHc at almost the same positions as those in PO, PjHc showed no enzymatic activity under our experimental conditions. One striking difference between PjHc and arthropod PO was the presence of a "blocker residue" near the binuclear copper site of PjHc. This blocker residue comprised a phenylalanine residue tightly stacked with an imidazole ring of a CuA coordinated histidine and hindered substrates from accessing the active site. Our results suggest that the blocker residue is also a determining factor of the catalytic activity of type 3 copper proteins.


Asunto(s)
Hemocianinas/química , Monofenol Monooxigenasa/química , Secuencia de Aminoácidos , Animales , Artrópodos/enzimología , Bacillus megaterium/enzimología , Dominio Catalítico , Cobre/química , Cristalografía por Rayos X , Alineación de Secuencia
4.
J Biochem ; 168(4): 393-405, 2020 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-32458972

RESUMEN

Secretory and membrane proteins synthesized in the endoplasmic reticulum (ER) are folded with intramolecular disulphide bonds, viz. oxidative folding, catalysed by the protein disulphide isomerase (PDI) family proteins. Here, we identified a novel soybean PDI family protein, GmPDIL6. GmPDIL6 has a single thioredoxin-domain with a putative N-terminal signal peptide and an active centre (CKHC). Recombinant GmPDIL6 forms various oligomers binding iron. Oligomers with or without iron binding and monomers exhibited a dithiol oxidase activity level comparable to those of other soybean PDI family proteins. However, they displayed no disulphide reductase and extremely low oxidative refolding activity. Interestingly, GmPDIL6 was mainly expressed in the cotyledon during synthesis of seed storage proteins and GmPDIL6 mRNA was up-regulated under ER stress. GmPDIL6 may play a role in the formation of disulphide bonds in nascent proteins for oxidative folding in the ER.


Asunto(s)
Retículo Endoplásmico/metabolismo , Glycine max/enzimología , Proteína Disulfuro Isomerasas/metabolismo , Tolueno/análogos & derivados , Secuencia de Aminoácidos , Clonación Molecular/métodos , Oxidación-Reducción , Proteína Disulfuro Isomerasas/química , Proteína Disulfuro Isomerasas/genética , Pliegue de Proteína , Homología de Secuencia , Tolueno/química , Tolueno/metabolismo
5.
J Biol Chem ; 294(49): 18820-18835, 2019 12 06.
Artículo en Inglés | MEDLINE | ID: mdl-31685660

RESUMEN

In the endoplasmic reticulum (ER), ER oxidoreductin 1 (ERO1) catalyzes intramolecular disulfide-bond formation within its substrates in coordination with protein-disulfide isomerase (PDI) and related enzymes. However, the molecular mechanisms that regulate the ERO1-PDI system in plants are unknown. Reduction of the regulatory disulfide bonds of the ERO1 from soybean, GmERO1a, is catalyzed by enzymes in five classes of PDI family proteins. Here, using recombinant proteins, vacuum-ultraviolet circular dichroism spectroscopy, biochemical and protein refolding assays, and quantitative immunoblotting, we found that GmERO1a activity is regulated by reduction of intramolecular disulfide bonds involving Cys-121 and Cys-146, which are located in a disordered region, similarly to their locations in human ERO1. Moreover, a GmERO1a variant in which Cys-121 and Cys-146 were replaced with Ala residues exhibited hyperactive oxidation. Soybean PDI family proteins differed in their ability to regulate GmERO1a. Unlike yeast and human ERO1s, for which PDI is the preferred substrate, GmERO1a directly transferred disulfide bonds to the specific active center of members of five classes of PDI family proteins. Of these proteins, GmPDIS-1, GmPDIS-2, GmPDIM, and GmPDIL7 (which are group II PDI family proteins) failed to catalyze effective oxidative folding of substrate RNase A when there was an unregulated supply of disulfide bonds from the C121A/C146A hyperactive mutant GmERO1a, because of its low disulfide-bond isomerization activity. We conclude that regulation of plant ERO1 activity is particularly important for effective oxidative protein folding by group II PDI family proteins.


Asunto(s)
Oxidorreductasas actuantes sobre Donantes de Grupos Sulfuro/química , Oxidorreductasas actuantes sobre Donantes de Grupos Sulfuro/metabolismo , Retículo Endoplásmico/metabolismo , Humanos , Oxidación-Reducción , Proteína Disulfuro Isomerasas/química , Proteína Disulfuro Isomerasas/metabolismo , Pliegue de Proteína , Isoformas de Proteínas/metabolismo
6.
Protein Sci ; 27(11): 1955-1960, 2018 11.
Artículo en Inglés | MEDLINE | ID: mdl-30099791

RESUMEN

Ferritin, a ubiquitous iron storage protein, has a crucial role in innate immunity in arthropods, which have no adaptive immune system. Arthropods are thought to have two types of ferritin molecules: the secreted type and the cytosolic type. Here, we present the first crystal structure of ferritin from crustacean, kuruma prawn (Marsupenaeus japonicus), at 1.16 Å resolution. This shrimp ferritin (MjFer) is the cytosolic type, and its structure shows well-conserved ferritin fold composed of a 4-helix bundle that assembles into a cage-like 24-mer. The structure of MjFer was more similar to those of human and vertebrate ferritins than to that of the secreted-type arthropod ferritin from an insect. MjFer possesses both a ferroxidase site and a nucleation site, which are the main characteristics of vertebrate H and L chain ferritins, respectively. The first crystal structure of crustacean ferritin, MjFer, has exceptionally high quality that provides the detailed structural information of metal moving pathway in ferritin.


Asunto(s)
Ferritinas/química , Secuencia de Aminoácidos , Aminoácidos/química , Animales , Dominio Catalítico , Ceruloplasmina/química , Cristalización/métodos , Humanos , Metales/metabolismo , Modelos Moleculares , Conformación Proteica
7.
Food Chem ; 260: 166-173, 2018 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-29699658

RESUMEN

Phenoloxidases (POs) play a crucial role in melanization of crustaceans. There are at least two types of POs characterized in crustaceans: the conventional type (POα here) that is expressed in hemocytes and POß, a secreted protein synthesized in the hepatopancreas. We investigated the source of PO activity in the hemolymph of a lobster and determined the kinetic parameters of mono- and di-PO activities. In the lobster hemolymph, POα, which formed a hexamer similar to both POß and hemocyanin, contributed to PO activity, whereas the amount of POß was low. Kinetic analyses using purified prophenoloxidase of crustaceans showed that lobster POα has a higher rate constant, while shrimp POß has higher specificity in both mono- and di-PO reactions, when tyramine and dopamine were employed as substrates. There should be at least two types of PO molecules in crustacean hemolymph, but the dominant PO molecule type varies among species.


Asunto(s)
Hemolinfa/enzimología , Monofenol Monooxigenasa/metabolismo , Palinuridae/enzimología , Animales , Catecol Oxidasa , Dopamina/metabolismo , Precursores Enzimáticos , Hemocianinas/metabolismo , Hemocitos/enzimología , Cinética , Penaeidae/enzimología , Especificidad de la Especie , Especificidad por Sustrato , Tiramina/metabolismo
8.
Int J Surg Case Rep ; 38: 122-127, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28756361

RESUMEN

INTRODUCTION: Intestinal neuronal dysplasia type B (IND-B) is an infrequent disease of the submucosal plexus of intestine manifesting chronic intestinal obstruction or severe chronic constipation. IND is rarely reported in adult patients. PRESENTATION OF A CASE: The present study reports on the case of a 36 year-old woman suffering from longstanding chronic constipation and who was diagnosed with severe constipation in more than 20 years. Although she began to take a large amount of stimulant laxatives, such as "senna" and "bisacodyl", constipation symptoms did not improve, she was admitted to our hospital. It was diagnosed with refractory constipation of the medication treatment-resistance, total colectomy with ileorectal anastomosis by single incision laparoscopic surgery (SILS) was performed. The final pathological diagnosis was IND-B. DISCUSSION: Refractory constipation after medical treatment is often seen in young generation. SILS has benefits of better cosmesis, reduced morbidity, reduced postoperative pain, and reduced length of hospital stay. CONCLUSION: For the patients with refractory constipation associated with neuropathy such as IND, total colectomy by SILS was very effective.

9.
FEBS J ; 284(3): 414-428, 2017 02.
Artículo en Inglés | MEDLINE | ID: mdl-27960051

RESUMEN

Most proteins synthesized in the endoplasmic reticulum (ER) possess intramolecular and intermolecular disulfide bonds, which play an important role in the conformational stability and function of proteins. Hence, eukaryotic cells contain protein disulfide bond formation pathways such as the protein disulfide isomerase (PDI)-ER oxidoreductin 1 (Ero1) system in the ER lumen. In this study, we identified soybean PDIL7 (GmPDIL7), a novel soybean ER membrane-bound PDI family protein, and determined its enzymatic properties. GmPDIL7 has a putative N-terminal signal sequence, a thioredoxin domain with an active center motif (CGHC), and a putative C-terminal transmembrane region. Likewise, we demonstrated that GmPDIL7 is ubiquitously expressed in soybean tissues and is localized in the ER membrane. Furthermore, GmPDIL7 associated with other soybean PDI family proteins in vivo and GmPDIL7 mRNA was slightly upregulated under ER stress. The redox potential of recombinant GmPDIL7 expressed in Escherichia coli was -187 mV, indicating that GmPDIL7 could oxidize unfolded proteins. GmPDIL7 exhibited a dithiol oxidase activity level that was similar to other soybean PDI family proteins. However, the oxidative refolding activity of GmPDIL7 was lower than other soybean PDI family proteins. GmPDIL7 was well oxidized by GmERO1. Taken together, our results indicated that GmPDIL7 primarily plays a role as a supplier of disulfide bonds in nascent proteins for oxidative folding on the ER membrane. DATABASE: The nucleotide sequence data for the GmPDIL7 cDNA are available in the DNA Data Bank of Japan (DDBJ) databases under the accession numbers LC158001. ENZYME: Protein disulfide isomerase: EC 5.3.4.1.


Asunto(s)
Retículo Endoplásmico/metabolismo , Glycine max/química , Proteínas de Plantas/metabolismo , Proteína Disulfuro Isomerasas/metabolismo , ARN Mensajero/genética , Secuencia de Aminoácidos , Clonación Molecular , Retículo Endoplásmico/química , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Oxidación-Reducción , Proteínas de Plantas/química , Proteínas de Plantas/genética , Unión Proteica , Proteína Disulfuro Isomerasas/química , Proteína Disulfuro Isomerasas/genética , Dominios Proteicos , Señales de Clasificación de Proteína , ARN Mensajero/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Glycine max/enzimología
10.
Rinsho Ketsueki ; 57(7): 951-8, 2016 07.
Artículo en Japonés | MEDLINE | ID: mdl-27498743

RESUMEN

Erythropoiesis requires large amounts of iron for hemoglobin synthesis, which is mainly provided by macrophages and the intestines in a transferrin (Tf)-bound form. Bone marrow erythroblasts incorporate Tf through endocytosis, which is mediated by transferrin receptor 1 (TFR1). Recently, human TFR1, aside from its role as a Tf receptor, was also found to be a receptor for the H-subunit of ferritin (FTH). In humans, hematopoietic erythroid precursor cells express high levels of TFR1 and specifically take up the FTH homopolymer (H-ferritin). H-ferritin inhibits the formation of burst forming unit-erythroid colonies in vitro. TFR2, which is also a Tf receptor, is predominantly expressed in hepatocytes and erythroid precursor cells. In the liver, TFR2 forms a complex with HFE, a hereditary hemochromatosis-associated protein, and acts as an iron sensor. In mice, hepatocyte-specific knockout of the TFR2 gene has been shown to cause systemic iron-overload with decreased expression of hepcidin, the central regulator of iron homeostasis. In erythroid cells, TFR2 forms a complex with the erythropoietin receptor and facilitates its trafficking to the cell membrane. Moreover, hematopoietic cell-specific knockout of the TFR2 gene causes microcytic erythrocytosis in mice. This review focuses on the molecular evolution and functions of these TFRs and their ligands.


Asunto(s)
Eritrocitos/metabolismo , Eritropoyesis , Receptores de Transferrina/metabolismo , Animales , Eritrocitos/citología , Evolución Molecular , Ferritinas/metabolismo , Humanos , Hierro/metabolismo , Receptores de Transferrina/genética
11.
Plant Physiol ; 170(2): 774-89, 2016 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-26645455

RESUMEN

Most proteins produced in the endoplasmic reticulum (ER) of eukaryotic cells fold via disulfide formation (oxidative folding). Oxidative folding is catalyzed by protein disulfide isomerase (PDI) and PDI-related ER protein thiol disulfide oxidoreductases (ER oxidoreductases). In yeast and mammals, ER oxidoreductin-1s (Ero1s) supply oxidizing equivalent to the active centers of PDI. In this study, we expressed recombinant soybean Ero1 (GmERO1a) and found that GmERO1a oxidized multiple soybean ER oxidoreductases, in contrast to mammalian Ero1s having a high specificity for PDI. One of these ER oxidoreductases, GmPDIM, associated in vivo and in vitro with GmPDIL-2, was unable to be oxidized by GmERO1a. We therefore pursued the possible cooperative oxidative folding by GmPDIM, GmERO1a, and GmPDIL-2 in vitro and found that GmPDIL-2 synergistically accelerated oxidative refolding. In this process, GmERO1a preferentially oxidized the active center in the A': domain among the A: , A': , and B: domains of GmPDIM. A disulfide bond introduced into the active center of the A': domain of GmPDIM was shown to be transferred to the active center of the A: domain of GmPDIM and the A: domain of GmPDIM directly oxidized the active centers of both the A: or A': domain of GmPDIL-2. Therefore, we propose that the relay of an oxidizing equivalent from one ER oxidoreductase to another may play an essential role in cooperative oxidative folding by multiple ER oxidoreductases in plants.


Asunto(s)
Glycine max/enzimología , Oxidorreductasas/metabolismo , Proteína Disulfuro Reductasa (Glutatión)/química , Proteína Disulfuro Isomerasas/metabolismo , Catálisis , Disulfuros/metabolismo , Retículo Endoplásmico/enzimología , Oxidación-Reducción , Oxidorreductasas/genética , Proteína Disulfuro Reductasa (Glutatión)/genética , Proteína Disulfuro Reductasa (Glutatión)/metabolismo , Proteína Disulfuro Isomerasas/genética , Pliegue de Proteína , Proteínas Recombinantes , Glycine max/genética
12.
PLoS One ; 10(10): e0139915, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26441243

RESUMEN

Ferritin is an iron-storage protein composed of different ratios of 24 light (L) and heavy (H) subunits. The serum level of ferritin is a clinical marker of the body's iron level. Transferrin receptor (TFR)1 is the receptor not only for transferrin but also for H-ferritin, but how it binds two different ligands and the blood cell types that preferentially incorporate H-ferritin remain unknown. To address these questions, we investigated hematopoietic cell-specific ferritin uptake by flow cytometry. Alexa Fluor 488-labeled H-ferritin was preferentially incorporated by erythroid cells among various hematopoietic cell lines examined, and was almost exclusively incorporated by bone marrow erythroblasts among human primary hematopoietic cells of various lineages. H-ferritin uptake by erythroid cells was strongly inhibited by unlabeled H-ferritin but was only partially inhibited by a large excess of holo-transferrin. On the other hand, internalization of labeled holo-transferrin by these cells was not inhibited by H-ferritin. Chinese hamster ovary cells lacking functional endogenous TFR1 but expressing human TFR1 with a mutated RGD sequence, which is required for transferrin binding, efficiently incorporated H-ferritin, indicating that TFR1 has distinct binding sites for H-ferritin and holo-transferrin. H-ferritin uptake by these cells required a threshold level of cell surface TFR1 expression, whereas there was no threshold for holo-transferrin uptake. The requirement for a threshold level of TFR1 expression can explain why among primary human hematopoietic cells, only erythroblasts efficiently take up H-ferritin.


Asunto(s)
Antígenos CD/metabolismo , Apoferritinas/metabolismo , Células Eritroides/metabolismo , Receptores de Transferrina/metabolismo , Animales , Transporte Biológico , Células CHO , Línea Celular Tumoral , Membrana Celular/metabolismo , Cricetinae , Cricetulus , Ferritinas/metabolismo , Humanos
13.
J Agric Food Chem ; 63(40): 8890-5, 2015 Oct 14.
Artículo en Inglés | MEDLINE | ID: mdl-26390371

RESUMEN

Ferritin, a multimeric iron storage protein distributed in almost all living kingdoms, has been highlighted recently as a nutritional iron source in plant-derived foodstuffs, because ferritin iron is suggested to have high bioavailability. In soybean seeds, ferritin contributes largely to the net iron contents. Here, the oligomeric states and iron contents of soybean ferritin during food processing (especially tofu gel formation) were analyzed. Ferritin was purified from tofu gel as an iron-containing oligomer (approximately 1000 Fe atoms per oligomer), which was composed of two types of subunits similar to the native soybean seed ferritin. Circular dichroism spectra also showed no differences in α-helical structure between native soybean ferritin and tofu ferritin. The present data demonstrate that ferritin was stable during the heat treatment (boiling procedure) in food processing, although partial denaturation was observed at temperatures higher than 80 °C.


Asunto(s)
Ferritinas/química , Glycine max/química , Hierro/química , Proteínas de Plantas/química , Alimentos de Soja/análisis , Culinaria , Manipulación de Alimentos , Calor
14.
Case Rep Rheumatol ; 2015: 271823, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25949841

RESUMEN

Granulomatosis with polyangiitis (GPA) sometimes involves the eye orbit; however, choroidal involvements in GPA had been rarely reported. We report a rare case presenting with a choroidal mass in an 83-year-old Japanese woman who presented with left eye pain. Diagnostic biopsy revealed necrotizing vasculitis with infiltrates of inflammatory cells. Diagnosis was localized granulomatosis with polyangiitis. Combined treatments with corticosteroid plus azathioprine resolved the choroidal mass region. Although treatment with corticosteroid and immunosuppressive agents improves the prognosis of the disease, ocular morbidity is still well recognized. Clinicians should consider a differential diagnosis of GPA in patients with inflammatory choroidal tumors.

15.
BMC Plant Biol ; 15: 73, 2015 Mar 04.
Artículo en Inglés | MEDLINE | ID: mdl-25849633

RESUMEN

BACKGROUND: The major wheat seed proteins are storage proteins that are synthesized in the rough endoplasmic reticulum (ER) of starchy endosperm cells. Many of these proteins have intra- and intermolecular disulfide bonds. In eukaryotes, the formation of most intramolecular disulfide bonds in the ER is thought to be catalyzed by protein disulfide isomerase (PDI) family proteins. The cDNAs that encode eight groups of bread wheat (Triticum aestivum L.) PDI family proteins have been cloned, and their expression levels in developing wheat grains have been determined. The purpose of the present study was to characterize the enzymatic properties of the wheat PDI family proteins and clarify their expression patterns in wheat caryopses. RESULTS: PDI family cDNAs, which are categorized into group I (TaPDIL1Aα, TaPDIL1Aß, TaPDIL1Aγ, TaPDIL1Aδ, and TaPDIL1B), group II (TaPDIL2), group III (TaPDIL3A), group IV (TaPDIL4D), and group V (TaPDIL5A), were cloned. The expression levels of recombinant TaPDIL1Aα, TaPDIL1B, TaPDIL2, TaPDIL3A, TaPDIL4D, and TaPDIL5A in Escherichia coli were established from the cloned cDNAs. All recombinant proteins were expressed in soluble forms and purified. Aside from TaPDIL3A, the recombinant proteins exhibited oxidative refolding activity on reduced and denatured ribonuclease A. Five groups of PDI family proteins were distributed throughout wheat caryopses, and expression levels of these proteins were higher during grain filling than in the late stage of maturing. Localization of these proteins in the ER was confirmed by fluorescent immunostaining of the immature caryopses. In mature grains, the five groups of PDI family proteins remained in the aleurone cells and the protein matrix of the starchy endosperm. CONCLUSIONS: High expression of PDI family proteins during grain filling in the starchy endosperm suggest that these proteins play an important role in forming intramolecular disulfide bonds in seed storage proteins. In addition, these PDI family proteins that remain in the aleurone layers of mature grains likely assist in folding newly synthesized hydrolytic enzymes during germination.


Asunto(s)
Pan , Regulación de la Expresión Génica de las Plantas , Familia de Multigenes , Proteínas de Plantas/genética , Triticum/enzimología , Clonación Molecular , Endospermo/metabolismo , Genes de Plantas , Oxidación-Reducción , Proteínas de Plantas/metabolismo , Proteína Disulfuro Isomerasas , Transporte de Proteínas , Proteínas Recombinantes/metabolismo , Almidón/metabolismo , Fracciones Subcelulares/metabolismo , Triticum/genética
16.
Biosci Biotechnol Biochem ; 79(1): 45-50, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25252615

RESUMEN

Chitinase hydrolyzes the ß-1,4-glycosidic bond in chitin. In higher plants, this enzyme has been regarded as a pathogenesis-related protein. Recently, we identified a class III chitinase, which functions as a calcium storage protein in pomegranate (Punica granatum) seed (PSC, pomegranate seed chitinase). Here, we solved a crystal structure of PSC at 1.6 Å resolution. Although its overall structure, including the structure of catalytic site and non-proline cis-peptides, was closely similar to those of other class III chitinases, PSC had some unique structural characteristics. First, there were some metal-binding sites with coordinated water molecules on the surface of PSC. Second, many unconserved aspartate residues were present in the PSC sequence which rendered the surface of PSC negatively charged. This acidic electrostatic property is in contrast to that of hevamine, well-characterized plant class III chitinase, which has rather a positively charged surface. Thus, the crystal structure provides a clue for metal association property of PSC.


Asunto(s)
Calcio/química , Quitinasas/química , Lythraceae/química , Proteínas de Plantas/química , Semillas/química , Agua/química , Secuencia de Aminoácidos , Ácido Aspártico/química , Dominio Catalítico , Quitinasas/genética , Cristalografía por Rayos X , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Lythraceae/enzimología , Modelos Moleculares , Datos de Secuencia Molecular , Muramidasa/química , Proteínas de Plantas/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Semillas/enzimología , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Especificidad de la Especie , Electricidad Estática
17.
Biosci Biotechnol Biochem ; 79(1): 74-81, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25315337

RESUMEN

Iron is one of the essential trace elements for humans. In this study, the iron contents in fresh, dried, and toasted nori (Pyropia yezoensis) were analyzed. The mean iron content of fresh, dried, and toasted nori were 19.0, 22.6, and 26.2 mg/100 g (dry weight), respectively. These values were superior to other food of plant origin. Furthermore, most of the iron in nori was maintained during processing, such as washing, drying, and toasting. Then, the form of iron in fresh, dried, and toasted nori was analyzed. As a result, an iron storage protein ferritin contributed to iron storage in raw and dried nori, although the precise rate of its contribution is yet to be determined, while ferritin protein cage was degraded in the toasted nori. It is the first report that verified the ferritin contribution to iron storage in such edible macroalgae with commercial importance.


Asunto(s)
Proteínas Algáceas/química , Ferritinas/química , Hierro/análisis , Porphyra/química , Algas Marinas/química , Proteínas Algáceas/genética , Proteínas Algáceas/metabolismo , Secuencia de Aminoácidos , Culinaria , Escherichia coli/genética , Escherichia coli/metabolismo , Ferritinas/genética , Ferritinas/metabolismo , Alimentos , Análisis de los Alimentos , Expresión Génica , Humanos , Hierro/química , Hierro/metabolismo , Modelos Moleculares , Datos de Secuencia Molecular , Unión Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Alineación de Secuencia , Homología de Secuencia de Aminoácido
18.
FEBS J ; 281(23): 5341-55, 2014 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-25265152

RESUMEN

UNLABELLED: Multiple enzymatic systems can catalyse protein disulfide bond formation in the endoplasmic reticulum (ER) of eukaryotic cells. The enzyme quiescin sulfhydryl oxidase (QSOX) catalyses disulfide bond formation in unfolded proteins via the reduction of oxygen. We found two QSOX homologues in the soybean genome database, Glycine max QSOX (GmQSOX)1 and GmQSOX2, which encode proteins composed of an N-terminal signal peptide, a thioredoxin-like domain, an FAD-binding domain, Erv/ALR, and a transmembrane region near the C terminus. We subsequently cloned two GmQSOX1 cDNAs, GmQSOX1a and GmQSOX1b, which may be generated by alternative splicing. The GmQSOX1a, GmQSOX1b and GmQSOX2 mRNA levels increased during seed storage protein synthesis in the cotyledon, and were also upregulated under conditions causing ER stress. Recombinant GmQSOX1 expressed in Escherichia coli formed disulfide bonds on reduced and denatured RNase A, but did not show any refolding activity. The reduced and denatured RNase A was effectively refolded by recombinant GmQSOX1 in the presence of the soybean protein disulfide isomerase family protein GmPDIL-2 in the absence of glutathione redox buffer, suggesting that GmQSOX1 plays a role in protein folding in the ER. DATABASES: The nucleotide sequence data for the GmQSOX1a, GmQSOX1b, GmQSOX2a, GmQSOX2b and glycinin AaB1b cDNAs are available in the DDBJ/EMBL/GenBank databases under the accession numbers AB196647, AB195548, XM-006589586, XM-003536592, and AB113349, respectively.


Asunto(s)
Disulfuros/química , Glycine max/enzimología , Oxidorreductasas/metabolismo , Secuencia de Bases , Ditiotreitol/farmacología , Datos de Secuencia Molecular , Pliegue de Proteína , Ribonucleasa Pancreática/metabolismo
19.
FEBS J ; 281(11): 2659-73, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-24720693

RESUMEN

UNLABELLED: Phenoloxidase (PO), which is classified as a type 3 copper protein, catalyzes the hydroxylation of monophenol to o-diphenol and subsequent oxidation to the corresponding o-quinone. The geometry and coordination environment of the active site of the arthropod PO are very similar to those of the arthropod hemocyanin (Hc). However, unlike the POs, Hc is an oxygen carrier in crustaceans, and does not possess PO activity in general. Recently, we identified a new type of proPO from a crustacean and designated it proPOß. This enzyme has many characteristics that are rather similar to those of Hc, such as its maturation, localization, and oligomeric state. Here, we determined the crystal structure of proPOß prepared from the hemolymph of kuruma prawns (Marsupenaeus japonicus) at 1.8-Å resolution. M. japonicus proPOß forms a homohexamer rather similar to that of arthropod Hc. The geometry of the active copper site in proPOß is nearly identical to that of arthropod Hc. Furthermore, the well-characterized 'place-holder' phenylalanine is present (Phe72). However, the accessibility to the active site differs in several ways. First, another phenylalanine, which shields the active site by interacting with a copper-coordinated histidine in crustacean Hc, is replaced by valine in the proPOß structure. Second, two tyrosines, Tyr208 and Tyr209, both of which are absent in Hc, show the alternative conformations and form a pathway providing access to the reaction center. Thus, the present crystal structure clarifies the similarities and differences in the activity of two closely related proteins, PO and Hc. DATABASE: Structural data are available in the RSCB protein data bank under the accession number 3WKY. ray crystallography (View interaction).


Asunto(s)
Artrópodos/enzimología , Catecol Oxidasa/metabolismo , Precursores Enzimáticos/metabolismo , Animales , Catecol Oxidasa/química , Precursores Enzimáticos/química
20.
Transgenic Res ; 23(4): 609-20, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-24676962

RESUMEN

Soybean 7S globulin, known as ß-conglycinin, has been shown to regulate human plasma cholesterol and triglyceride levels. Furthermore, the α' subunit of ß-conglycinin has specifically been shown to possess low-density lipoprotein (LDL)-cholesterol-lowering activity. Therefore, accumulation of the α' subunit of ß-conglycinin in rice seeds could lead to the production of new functional rice that could promote human health. Herein, we used the low-glutelin rice mutant 'Koshihikari' (var. a123) and suppressed its glutelins and prolamins, the major seed storage proteins of rice, by RNA interference. The accumulation levels of the α' subunit in the lines with suppressed glutelin and prolamin levels were >20 mg in 1 g of rice seeds, which is considerably higher than those in previous studies. Oral administration of the transgenic rice containing the α' subunit exhibited a hypocholesterolemic activity in rats; the serum total cholesterol and LDL cholesterol levels were significantly reduced when compared to those of the control rice (var. a123). The cholesterol-lowering action by transgenic rice accumulating the α' subunit induces a significant increase in fecal bile acid excretion and a tendency to increase in fecal cholesterol excretion. This is the first report that transgenic rice exhibits a hypocholesterolemic activity in rats in vivo by using the ß-conglycinin α' subunit.


Asunto(s)
Anticolesterolemiantes/metabolismo , Antígenos de Plantas/administración & dosificación , Antígenos de Plantas/metabolismo , Globulinas/administración & dosificación , Globulinas/metabolismo , Glycine max/metabolismo , Oryza/metabolismo , Plantas Modificadas Genéticamente/metabolismo , Proteínas de Almacenamiento de Semillas/administración & dosificación , Proteínas de Almacenamiento de Semillas/metabolismo , Proteínas de Soja/administración & dosificación , Proteínas de Soja/metabolismo , Administración Oral , Animales , Western Blotting , Colesterol/metabolismo , LDL-Colesterol/metabolismo , Cromatografía Liquida , Electroforesis en Gel Bidimensional , Glútenes/metabolismo , Humanos , Masculino , Oryza/genética , Oryza/crecimiento & desarrollo , Plantas Modificadas Genéticamente/genética , Plantas Modificadas Genéticamente/crecimiento & desarrollo , Ratas , Ratas Sprague-Dawley , Semillas/química , Semillas/metabolismo , Glycine max/química , Espectrometría de Masas en Tándem
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