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1.
Environ Sci Technol ; 58(6): 2750-2761, 2024 Feb 13.
Artículo en Inglés | MEDLINE | ID: mdl-38294931

RESUMEN

With the increased occurrences of wildfires worldwide, there has been an increase in scientific interest surrounding the chemistry of fire-derived "black" carbon (BC). Traditionally, wildfire research has assumed that condensed aromatic carbon (ConAC) is exclusively produced via combustion, and thus, ConAC is equated to BC. However, the lack of correlations between ConAC in soils or rivers and wildfire history suggests that ConAC may be produced non-pyrogenically. Here, we show quantitative evidence that this occurs during the oxidation of biomass with environmentally ubiquitous hydroxyl radicals. Pine wood boards exposed to iron nails and natural weather conditions for 12 years yielded a charcoal-like ConAC-rich material. ConAC was also produced during laboratory oxidations of pine, maple, and brown-rotted oak woods, as well as algae, corn root, and tree bark. Back-of-the-envelope calculations suggest that biomass oxidation could be producing massive non-pyrogenic ConAC fluxes to terrestrial and aquatic environments. These estimates (e.g., 163-182 Tg-ConAC/year to soils) are much higher than the estimated pyrogenic "BC" fluxes (e.g., 128 Tg-ConAC/year to soils) implying that environmental ConAC is primarily non-pyrogenic. This novel perspective suggests that wildfire research trajectories should shift to assessing non-pyrogenic ConAC sources and fluxes, developing new methods for quantifying true BC, and establishing a new view of ConAC as an intermediate species in the biogeochemical processing of biomass during soil humification, aquatic photochemistry, microbial degradation, or mineral-organic matter interactions. We also advise against using BC or pyrogenic carbon (pyC) terminologies for ConAC measured in environmental matrices, unless a pyrogenic source can be confidently assigned.


Asunto(s)
Carbono , Incendios , Biomasa , Carbón Orgánico , Hollín/análisis , Suelo
2.
Environ Sci Technol ; 57(8): 3104-3113, 2023 02 28.
Artículo en Inglés | MEDLINE | ID: mdl-36781166

RESUMEN

Mining wastes or combustion ash are materials of high carbon sequestration potential but are also known for their toxicity in terms of heavy metal content. To utilize such waste materials for engineered carbon mineralization purposes, there is a need to investigate the fate and mobility of toxic metals. This is a study of the coprecipitation of metals with calcium carbonate for environmental heavy metal mitigation. The study also examines the stability of precipitated phases under environmentally relevant acid conditions. For a wide range of cadmium (Cd) and zinc (Zn) concentrations (10 to 5000 mg/L), induced coprecipitation led to greater than 99% uptake from water. The calcium carbonate phases were found to contain amounts as high as 9.9 wt % (Cd) and 17 wt % (Zn), as determined by novel synchrotron techniques, including X-ray fluorescence element mapping and three-dimensional (3D) nanotransmission X-ray microscopy (TXM). TXM imaging revealed first-of-a-kind observations of chemical gradients and internal nanoporosity within particles. These observations provided new insights into the mechanisms leading to the retention of coprecipitated heavy metals during the dissolution of calcite in acidic (pH 4) solutions. These observations highlight the feasibility of utilizing carbonate coprecipitation as an engineered approach to the durable sequestration of toxic metals.


Asunto(s)
Metales Pesados , Zinc , Cadmio , Metales Pesados/química , Carbonatos , Carbonato de Calcio
3.
PLoS One ; 15(4): e0226180, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32302305

RESUMEN

Heavy metal accumulation in edible plants grown in contaminated soils poses a major environmental risk to humans and grazing animals. This study focused on the concentration and speciation of Zn in different edible plants grown in soils contaminated with smelter wastes (Spelter, WV, USA) containing high levels of the metals Zn, Cu, Pb, Cd. Their accumulation was examined in different parts (roots, stem, and leaves) of plants and as a function of growth stage (dry seed, sprouting seed, cotyledon, and leaves) in the root vegetables radish, the leafy vegetable spinach and the legume clover. Although the accumulation of metals varied significantly with plant species, the average metal concentrations were [Zn] > [Pb] > [Cu] > [Cd]. Metal uptake studies were complemented with bulk and micro X-ray absorption spectroscopy (XAS) at Zn K-edge and micro X-ray fluorescence (µXRF) measurements to evaluate the speciation and distribution of Zn in these plant species. Dynamic interplay between the histidine and malate complexation of Zn was observed in all plant species. XRF mapping of spinach leaves at micron spatial resolution demonstrated the accumulation of Zn in vacuoles and leaf tips. Radish root showed accumulation of Zn in root hairs, likely as ZnS nanoparticles. At locations of high Zn concentration in spinach leaves, µXANES suggests Zn complexation with histidine, as opposed to malate in the bulk leaf. These findings shed new light on the dynamic nature of Zn speciation in plants.


Asunto(s)
Plantas Comestibles/metabolismo , Contaminantes del Suelo/análisis , Verduras/metabolismo , Zinc/análisis , Monitoreo del Ambiente , Hojas de la Planta/química , Hojas de la Planta/metabolismo , Raíces de Plantas/química , Raíces de Plantas/metabolismo , Plantas Comestibles/química , Raphanus/química , Raphanus/metabolismo , Semillas/química , Semillas/metabolismo , Suelo/química , Contaminantes del Suelo/metabolismo , Spinacia oleracea/química , Spinacia oleracea/metabolismo , Trifolium/química , Trifolium/metabolismo , Verduras/química , Zinc/metabolismo
4.
Environ Sci Process Impacts ; 22(3): 642-652, 2020 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-32108209

RESUMEN

Naturally formed halogenated organic compounds are common in terrestrial and marine environments and play an important role in the halogen cycle. Among these halogenated compounds, chlorinated organic compounds are the most common halogenated species in all soils and freshwater sediments. This study evaluated how a previously observed phenomenon of bromination of organic matter in coastal soils due to salt-water intrusion impacts the stability and fate of natural organochlorine (org-Cl) in coastal wetland soils. The reacted solid and liquid samples were analyzed using X-ray spectroscopy (in cm and at micron scales for solids) and ion chromatography. We find that introduction of Br- species and their subsequent reactions with organic carbon are associated with an average of 39% loss of org-Cl species from leaf litter and soil. The losses are more prominent in org-Cl hotspots of leaf litter, and both aliphatic and aromatic organochlorine compounds are lost from all samples at high Br- concentrations. The combination of solid and aqueous phase analysis suggests that org-Cl loss is most likely largely associated with volatilization of org-Cl. Release of labile org-Cl compounds has detrimental environmental implications for both ecosystem toxicity, and stratospheric ozone. The reactions similar to those observed here can also have implications for the reactions of xenobiotic chlorinated compounds in soils.


Asunto(s)
Bromuros , Contaminantes del Suelo/análisis , Humedales , Bahías , Ecosistema , Suelo , South Carolina
5.
Environ Sci Technol ; 54(7): 3960-3968, 2020 04 07.
Artículo en Inglés | MEDLINE | ID: mdl-32097551

RESUMEN

The conversion of inorganic mercury (Hg(II)) to methylmercury (MeHg) is central to the understanding of Hg toxicity in the environment. Hg methylation occurs in the cytosol of certain obligate anaerobic bacteria and archaea possessing the hgcAB gene cluster. However, the processes involved in Hg(II) biouptake and methylation are not well understood. Here, we examined the role of cell surface thiols, cellular ligands with the highest affinity for Hg(II) that are located at the interface between the outer membrane and external medium, on the sorption and methylation of Hg(II) by Geobacter sulfurreducens. The effect of added cysteine (Cys), which is known to greatly enhance Hg(II) biouptake and methylation, was also explored. By quantitatively blocking surface thiols with a thiol binding ligand (qBBr), we show that surface thiols have no significant effect on Hg(II) methylation, regardless of Cys addition. The results also identify a significant amount of cell-associated Hg-S3/S4 species, as studied by high energy-resolution X-ray absorption near edge structure (HR-XANES) spectroscopy, under conditions of high MeHg production (with Cys addition). In contrast, Hg-S2 are the predominant species during low MeHg production. Hg-S3/S4 species may be related to enhanced Hg(II) biouptake or the ability of Hg(II) to become methylated by HgcAB and should be further explored in this context.


Asunto(s)
Mercurio , Compuestos de Metilmercurio , Bacterias , Ligandos , Metilación
6.
J Phys Chem Lett ; 10(10): 2585-2592, 2019 May 16.
Artículo en Inglés | MEDLINE | ID: mdl-31039606

RESUMEN

Identifying the zinc (Zn) ligation and coordination environment in complex biological and environmental systems is crucial to understand the role of Zn as a biologically essential but sometimes toxic metal. Most studies on Zn coordination in biological or environmental samples rely on the extended X-ray absorption fine structure (EXAFS) region of a Zn K-edge X-ray absorption spectroscopy (XAS) spectrum. However, EXAFS analysis cannot identify unique nearest neighbors with similar atomic number (i.e., O versus N) and provides little information on Zn ligation. Herein, we demonstrate that high energy resolution-X-ray absorption near edge structure (HR-XANES) spectroscopy enables the direct determination of Zn ligation in whole cell bacteria, providing additional insights lost from EXAFS analysis at a fraction of the scan time and Zn concentration. HR-XANES is a relatively new technique that has improved our understanding of trace metals (e.g., Hg, Cu, and Ce) in dilute systems. This study is the first to show that HR-XANES can unambiguously detect Zn coordination to carboxyl, phosphoryl, imidazole, and/or thiol moieties in model microorganisms.


Asunto(s)
Bacillus subtilis/química , Pseudomonas putida/química , Zinc/química , Bacillus subtilis/citología , Pseudomonas putida/citología , Espectroscopía de Absorción de Rayos X
7.
J Environ Qual ; 48(2): 233-235, 2019 03.
Artículo en Inglés | MEDLINE | ID: mdl-30951138

RESUMEN

Natural organic matter (NOM) is ubiquitous on the Earth surface and influences every biogeochemical reaction wherever it is present, and its impact on reactions varies with its abundance, structure, and chemistry. Because of decades of field and laboratory studies conducted on NOM in different environments, we are moving away from treating it as a black box to developing molecular structure-based approaches in investigations of soil, sediment, and aquatic systems and are beginning to make major advances in the detailed understanding of the molecular and structural characteristics of NOM, which in turn are helping in deciphering the biochemical processes involved in its evolution in the environment. Yet, many questions remain: How does NOM exist in different soil and aquatic environments? How should we obtain NOM from a sample, and does the isolated NOM represent the NOM in a sample? Do the geochemical reactions explored with extracted NOM represent the reality? How can we study NOM in situ? Here I present a synopsis of critical perspectives on the state of NOM research and a commentary on the reviews and debate presented in this special section on the NOM nomenclature, extraction procedures, and studies involving NOM in different environmental processes.


Asunto(s)
Ecosistema , Sustancias Húmicas/análisis , Álcalis , Suelo
8.
Chemosphere ; 187: 130-139, 2017 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-28846968

RESUMEN

Although abiotic process of competitive sorption between phosphate (P) and arsenate (As(V)), especially onto iron oxides, are well understood, P-mediated biotic processes of Fe and As redox transformation contributing to As mobilization and speciation in wetlands remain poorly defined. To gain new insights into the effects of P on As mobility, speciation, and bioavailability in wetlands, well-controlled greenhouse experiments were conducted. As expected, increased P levels contributed to more As desorption, but more interestingly the interactions between P and wetland plants played a synergistic role in the microbially-mediated As mobilization and enhanced As uptake by plants. High levels of P promoted plant growth and the exudation of labile organic carbon from roots, enhancing the growth of heterotrophic bacteria, including As and Fe reducers. This in turn resulted in both, more As desorption into solution due to reductive iron dissolution, and a higher fraction of the dissolved As in the form of As(III) due to the higher number of As(V) reducers. Consistent with the dissolved As results, arsenic-XANES spectra from solid medium samples demonstrated that more As was sequestered in the rhizosphere as As(III) in the presence of high P levels than for low P levels. Hence, increased P loading to wetlands stimulates both abiotic and biotic processes in the wetland rhizosphere, resulting in more As mobilization, more As reduction, as well as more As uptake by plants. These interactions are important to be taken into account in As fate and transport models in wetlands and management of wetlands containing As.


Asunto(s)
Arsénico/química , Fosfatos/química , Rizosfera , Humedales , Adsorción , Arseniatos , Bacterias/crecimiento & desarrollo , Bacterias/metabolismo , Disponibilidad Biológica , Compuestos Férricos/química , Oxidación-Reducción , Raíces de Plantas/metabolismo
9.
J Hazard Mater ; 321: 382-389, 2017 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-27669379

RESUMEN

Microbial redox transformations of arsenic (As) are coupled to dissimilatory iron and sulfate reduction in the wetlands, however, the processes involved are complex and poorly defined. In this study, we investigated the effect of dissimilatory iron and sulfate reduction on As dynamics in the wetland rhizosphere and its bioaccumulation in plants using greenhouse mesocosms. Results show that high Fe (50µM ferrihydrite/g solid medium) and SO42- (5mM) treatments are most favorable for As sequestration in the presence of wetland plants (Scirpus actus), probably because root exudates facilitate the microbial reduction of Fe(III), SO42-, and As(V) to sequester As(III) by incorporation into iron sulfides and/or plant uptake. As retention in the solid medium and accumulation in plants were mainly controlled by SO42- rather than Fe levels. Compared to the low SO42- (0.1mM) treatment, high SO42- resulted in 2 times more As sequestered in the solid medium, 30 times more As in roots, and 49% less As in leaves. An As speciation analysis in pore water indicated that 19% more dissolved As was reduced under high SO42- than low SO42- levels, which is consistent with the fact that more dissimilatory arsenate-respiring bacteria were found under high SO42- levels.


Asunto(s)
Arsénico/análisis , Cyperaceae/metabolismo , Contaminantes Ambientales/análisis , Compuestos Férricos/química , Sulfatos/química , Humedales , Arsénico/metabolismo , Biodegradación Ambiental , Cyperaceae/crecimiento & desarrollo , Cyperaceae/microbiología , Contaminantes Ambientales/metabolismo , Oxidación-Reducción , Raíces de Plantas/metabolismo , Raíces de Plantas/microbiología , Rizosfera
10.
J Am Chem Soc ; 137(41): 13325-33, 2015 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-26403582

RESUMEN

Nacre, or mother-of-pearl, the iridescent inner layer of many mollusk shells, is a biomineral lamellar composite of aragonite (CaCO3) and organic sheets. Biomineralization frequently occurs via transient amorphous precursor phases, crystallizing into the final stable biomineral. In nacre, despite extensive attempts, amorphous calcium carbonate (ACC) precursors have remained elusive. They were inferred from non-nacre-forming larval shells, or from a residue of amorphous material surrounding mature gastropod nacre tablets, and have only once been observed in bivalve nacre. Here we present the first direct observation of ACC precursors to nacre formation, obtained from the growth front of nacre in gastropod shells from red abalone (Haliotis rufescens), using synchrotron spectromicroscopy. Surprisingly, the abalone nacre data show the same ACC phases that are precursors to calcite (CaCO3) formation in sea urchin spicules, and not proto-aragonite or poorly crystalline aragonite (pAra), as expected for aragonitic nacre. In contrast, we find pAra in coral.


Asunto(s)
Minerales/química , Nácar/química , Nanotecnología , Microscopía Electrónica de Rastreo , Espectroscopía de Absorción de Rayos X
11.
Environ Sci Technol ; 48(10): 5798-807, 2014 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-24766407

RESUMEN

Elevated levels of fluoride (F(-)) in groundwaters of granitic and basaltic terrains pose a major environmental problem and are affecting millions of people all over the world. Hydroxyapatite (HA) has been shown to be a strong sorbent for F(-); however, low permeability of synthetic HA results in poor sorption efficiency. Here we provide a novel method of synthesizing nano- to micrometer sized HA on the surfaces of granular limestone to improve the sorption efficiency of the HA-based filter. Our experiments with granular limestone (38-63, 125-500 µm) and dissolved PO4(3-) (0.5-5.3 mM) as a function of pH (6-8) and temperature (25-80 °C) indicated rapid formation of nano- to micrometer sized HA crystals on granular limestone with the maximum surface coverage at lower pH and in the presence of multiple additions of aqueous PO4(3-). The HA crystal morphology varied with the above variables. The sorption kinetics and magnitude of F(-) sorption by HA-coated-fine limestone are comparable to those of pure HA, and the F(-) levels dropped to below the World Health Organization's drinking water limit of 79 µM for F(-) concentrations commonly encountered in contaminated potable waters, suggesting that these materials could be used as effective filters. Fluorine XANES spectra of synthetic HA reacted with F(-) suggest that the mode of sorption is through the formation of fluoridated-HA or fluorapatite at low F(-) levels and fluorite at high F(-) loadings.


Asunto(s)
Carbonato de Calcio/química , Carbonato de Calcio/síntesis química , Durapatita/síntesis química , Fluoruros/aislamiento & purificación , Nanopartículas/química , Adsorción , Cristalización , Durapatita/química , Ambiente , Fluoruros/química , Concentración de Iones de Hidrógeno , Cinética , Minerales/química , Fosfatos/química , Espectroscopía Infrarroja por Transformada de Fourier , Temperatura , Factores de Tiempo , Espectroscopía de Absorción de Rayos X , Difracción de Rayos X
12.
Environ Sci Technol ; 46(18): 9854-61, 2012 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-22916681

RESUMEN

Organic thiols are highly reactive ligands and play an important role in the speciation of several metals and organic pollutants in the environment. Although small thiols can be isolated and their concentrations can be estimated using chromatographic and derivatization techniques, estimating concentrations of thiols associated with biomacromolecules and humic substances has been difficult. Here we present a fluorescence-spectroscopy-based method for estimating thiol concentrations in biomacromolecules and cell membranes using one of the soluble bromobimanes, monobromo(trimethylammonio)bimane (qBBr). The fluorescence of this molecule increases significantly when it binds to a thiol. The change in the sample fluorescence due to thiols reacting with qBBr is used to determine thiol concentration in a sample. Using this method, small thiols such as cysteine and glutathione can be detected in clean solutions down to ~50 nM without their separation and prior concentration. Thiols associated with dissolved organic matter (DOM) can be detected down to low micromolar concentration, depending on the DOM background fluorescence. The charge on qBBr prevents its rapid diffusion across cell membranes, so qBBr is ideal for estimating thiol concentration at the cell membrane-water interface. This method was successfully used to determine the thiol concentration on the cell envelope of intact Bacillus subtilis to nanomolar concentration without any special sample preparation. Among the chemical species tested for potential interferences (other reduced sulfides methionine and cystine, carboxylate, salt (MgCl(2))), carboxylates significantly influenced the absolute fluorescence signal of the thiol-qBBr complex. However, this does not affect the detection of thiols in heterogeneous mixtures using the presented method.


Asunto(s)
Bacillus subtilis/química , Colorantes Fluorescentes/química , Sustancias Húmicas/análisis , Compuestos de Amonio Cuaternario/química , Espectrometría de Fluorescencia/métodos , Compuestos de Sulfhidrilo/análisis , Cisteína/análisis , Glutatión/análisis , Sensibilidad y Especificidad
13.
Appl Environ Microbiol ; 78(2): 393-401, 2012 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22101035

RESUMEN

The phylum Chloroflexi contains several isolated bacteria that have been found to respire a diverse array of halogenated anthropogenic chemicals. The distribution and role of these Chloroflexi in uncontaminated terrestrial environments, where abundant natural organohalogens could function as potential electron acceptors, have not been studied. Soil samples (116 total, including 6 sectioned cores) from a range of uncontaminated sites were analyzed for the number of Dehalococcoides-like Chloroflexi 16S rRNA genes present. Dehalococcoides-like Chloroflexi populations were detected in all but 13 samples. The concentrations of organochlorine ([organochlorine]), inorganic chloride, and total organic carbon (TOC) were obtained for 67 soil core sections. The number of Dehalococcoides-like Chloroflexi 16S rRNA genes positively correlated with [organochlorine]/TOC while the number of Bacteria 16S rRNA genes did not. Dehalococcoides-like Chloroflexi were also observed to increase in number with a concomitant accumulation of chloride when cultured with an enzymatically produced mixture of organochlorines. This research provides evidence that organohalide-respiring Chloroflexi are widely distributed as part of uncontaminated terrestrial ecosystems, they are correlated with the fraction of TOC present as organochlorines, and they increase in abundance while dechlorinating organochlorines. These findings suggest that organohalide-respiring Chloroflexi may play an integral role in the biogeochemical chlorine cycle.


Asunto(s)
Chloroflexi/aislamiento & purificación , Chloroflexi/metabolismo , Hidrocarburos Halogenados/metabolismo , Microbiología del Suelo , Carga Bacteriana , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Datos de Secuencia Molecular , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Suelo/química
14.
J Phys Chem A ; 114(20): 6138-48, 2010 May 27.
Artículo en Inglés | MEDLINE | ID: mdl-20443586

RESUMEN

Aqueous-phase X-ray absorption near-edge structure (XANES) spectra were collected on dissolved Al complexes with organic ligands, including desferrioxamine B, EDTA, acetohydroxamate, malate, oxalate, and salicylate. Spectral interpretations were made using the density functional theory-based modeling package StoBe. The goals of this work were to study the geometric and electronic structural characteristics of these complexes relative to Al(H(2)O)(6)(3+) and to examine the utility of the aqueous Al XANES technique as a tool for probing Al speciation and structure. In the case of EDTA, aqueous Fourier-transform infrared spectroscopy was also used to corroborate the structures of the Al(EDTA)(-) and AlOH(EDTA)(2-) complexes. Synthetic XANES spectra calculated with StoBe reproduced the observed spectral differences between Al(H(2)O)(6)(3+), Al(dfoB)(+), and Al(EDTA)(-). The narrower XANES feature observed for Al(dfoB)(+) relative to Al(H(2)O)(6)(3+) can be attributed to a weaker splitting of the Al 3p-O 2p interactions in the former, while Al(EDTA)(-) exhibits split Al 3p-ligand interactions that likely result from the mixed O/N coordination. In complexes with mixed aqua/organic-oxygen ligation (Al-acetohydroxamate, Al-malate, Al-oxalate, and Al-salicylate), spectra exhibit linear, systematic changes in peak width as a function of H(2)O to organic ligand ratio in the Al coordination sphere. These results highlight the sensitivity of the aqueous Al K-edge XANES spectrum to coordination environment and demonstrate its utility as an experimental probe for future studies of Al speciation in complex solutions.

15.
J Phys Chem A ; 112(42): 10595-603, 2008 Oct 23.
Artículo en Inglés | MEDLINE | ID: mdl-18826294

RESUMEN

The bonding environment of the aqueous Al(H2O)6(3+) complex was studied using X-ray absorption near-edge structure (XANES) spectroscopy at the Al K-edge, with spectral interpretations based on density functional theory (DFT). Calculations for a highly symmetric complex (T(h) symmetry) indicate electron transitions into Al3 p-O 2s and Al3 p-O 2p antibonding orbitals, with a split O 2p contribution that appears to be due to a weak pi-interaction of the Al 3p orbitals with water ligands off-axis (equatorial) with respect to the Al 3p axis. Calculations were performed with several hypothetical structures to assess the effects of Al-O bond length, orientation of water ligands in the first coordination shell, and the presence of a second solvation shell on the XANES spectrum. Similar transitions were observed in all of these cases, but with further splitting on addition of 12 solvation waters, inward tilting and random twisting of the water ligands, and nonuniform Al-O bond lengths. Although it was previously hypothesized that the broadness of the XANES spectrum for this complex is due to an asymmetric geometry, these results illustrate how an Al(H 2O)6(3+) geometry that is octahedral (O(h)) with respect to the Al-O6 core could produce the broad spectrum observed. Because geometric distortions would affect relative Al-O bond strengths, an understanding of the equilibrium Al(H2O)6(3+) geometry is prerequisite to a quantitative description of reaction chemistry, including acidity and ligand exchange.


Asunto(s)
Compuestos de Aluminio/química , Modelos Químicos , Agua/química , Simulación por Computador , Electrones , Estructura Molecular , Análisis Espectral , Rayos X
16.
J Biol Inorg Chem ; 12(3): 367-76, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-17171370

RESUMEN

Azotochelin is a biscatecholate siderophore produced by the nitrogen-fixing soil bacterium Azotobacter vinelandii. The complexation properties of azotochelin with a series of oxoanions [Mo(VI), W(VI) and V(V)] and divalent cations [Cu(II), Zn(II), Co(II) and Mn(II)] were investigated by potentiometry, UV-vis and X-ray spectroscopy. Azotochelin forms a strong 1:1 complex with molybdate (log K=7.6+/-0.4) and with tungstate and vanadate; the stability of the complexes increases in the order Mo

Asunto(s)
Lisina/análogos & derivados , Metales Pesados/química , Sideróforos/química , Aniones , Azotobacter vinelandii/química , Azotobacter vinelandii/metabolismo , Cationes Bivalentes , Concentración de Iones de Hidrógeno , Lisina/química , Estructura Molecular
17.
J Phys Chem A ; 110(42): 11809-18, 2006 Oct 26.
Artículo en Inglés | MEDLINE | ID: mdl-17048812

RESUMEN

X-ray absorption spectroscopy (XAS) is widely used to explore the coordination environments and structures of metal complexes in aqueous solutions and disordered phases. Although soft-XAS studies on gaseous phases, solid phases and their interfaces have shown that XAS is a versatile tool in studying the functional group composition of organic molecules, the application of XAS to studying aqueous solutions is seriously limited because of experimental difficulties. In this report, using a modified synchrotron endstation geometry, we show how soft-XAS was used to study the changes in electronic states of reactive functional groups in a bacterial macromolecule, desferrioxamine B (desB, a hydroxamate siderophore) and its structural analogue (acetohydroxamic acid (aHa)). We collected C, N, and O near edge X-ray absorption fine structure (NEXAFS) spectra of these molecules in aqueous solutions and complemented their spectral interpretation with calculated X-ray spectra of "hydrated" aHa. The experimental spectra of desB are similar to those for aHa at the C, N, and O K-edges. In addition, the electronic transitions of amide and hydroxamate functional groups in the macromolecule can be distinguished from the N spectra. Small energy differences in the pi*(C=O)NO and the transitions at the C- and N-edges of aHa and desB indicate that the substituent attached to N in desB ((CH2)n) determines the electron density in the (C=O)NO core. As the solution pH increased, the pi*(C=O)NO transition of the hydroxamate group of these two molecules exhibit energy shifts at the C-, N-, and O-edges, which are consistent with increased electron delocalization in the (C=O)NO core of aHa (and desB), predicted from the calculations. The spectra of the aHa(H2O)3- anion also provide evidence for partial N-deprotonation at pH values usually attributed to an O-acid. These results indicate that soft-XAS is well suited for studying the electronic states of different functional groups in aqueous organic macromolecules.


Asunto(s)
Bacterias/química , Deferoxamina/química , Ácidos Hidroxámicos/química , Sideróforos/química , Concentración de Iones de Hidrógeno , Modelos Moleculares , Análisis Espectral/instrumentación , Análisis Espectral/métodos
18.
Anal Chem ; 78(16): 5711-8, 2006 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-16906715

RESUMEN

An in situ procedure for quantifying total organic and inorganic Cl concentrations in environmental samples based on X-ray absorption near-edge structure (XANES) spectroscopy has been developed. Cl 1s XANES spectra reflect contributions from all Cl species present in a sample, providing a definitive measure of total Cl concentration in chemically heterogeneous samples. Spectral features near the Cl K-absorption edge provide detailed information about the bonding state of Cl, whereas the absolute fluorescence intensity of the spectra is directly proportional to total Cl concentration, allowing for simultaneous determination of Cl speciation and concentration in plant, soil, and natural water samples. Absolute Cl concentrations are obtained from Cl 1s XANES spectra using a series of Cl standards in a matrix of uniform bulk density. With the high sensitivity of synchrotron-based X-ray absorption spectroscopy, Cl concentration can be reliably measured down to the 5-10 ppm range in solid and liquid samples. Referencing the characteristic near-edge features of Cl in various model compounds, we can distinguish between inorganic chloride (Cl(inorg)) and organochlorine (Cl(org)), as well as between aliphatic Cl(org) and aromatic Cl(org), with uncertainties in the range of approximately 6%. In addition, total organic and inorganic Br concentrations in sediment samples are quantified using a combination of Br 1s XANES and X-ray fluorescence (XRF) spectroscopy. Br concentration is detected down to approximately 1 ppm by XRF, and Br 1s XANES spectra allow quantification of the Br(inorg) and Br(org) fractions. These procedures provide nondestructive, element-specific techniques for quantification of Cl and Br concentrations that preclude extensive sample preparation.


Asunto(s)
Bromo/análisis , Cloro/análisis , Monitoreo del Ambiente/métodos , Hidrocarburos Halogenados/análisis , Espectrometría por Rayos X/métodos
19.
Environ Sci Technol ; 39(11): 4027-34, 2005 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-15984779

RESUMEN

The influence of soil-derived fulvic acid (SFA) on Ni(II) sorption and speciation in aqueous boehmite (gamma-AIOOH) suspensions was evaluated using a combination of sorption experiments and Ni K-edge extended X-ray absorption fine structure (EXAFS) spectroscopy measurements. Co-sorption of SFA at the aqueous-boehmite interface modifies both the extent of Ni(II) sorption as well as the local structure of the sorbing Ni(II) ions. In SFA-free suspensions, Ni(II) sorbs by forming inner-sphere bidentate mononuclear complexes with surface aluminol groups. Addition of SFA increases Ni(II) sorption at pH conditions below the sorption edge observed in SFA-free suspensions and diminishes Ni(II) sorption at pH above the SFA-free sorption edge. When SFA is co-sorbed to boehmite, Ni(II) sorbs by forming both ligand-bridging ternary surface complexes (Ni(II)-SFA-boehmite) as well as surface complexes in which Ni(II) remains directly bonded to aluminol groups, that is, binary Ni(II)-boehmite or metal-bridging ternary surface complexes (SFA-Ni(II)-boehmite). The relative contribution of the individual sorption complexes depends heavily on geochemical conditions; the concentration of ligand-bridging complexes increases with increasing SFA sorption and decreasing pH. The local structure of sorbed Ni(II) does not change with increasing reaction time even though the extent of sorption continues to increase. This supports a slow uptake mechanism where surface or intraparticle diffusion processes are rate-limiting. This work demonstrates that the association of humic constituents with soil minerals can significantly modify the mechanisms controlling trace metal sorption and transport in heterogeneous aquatic environments.


Asunto(s)
Hidróxido de Aluminio/química , Óxido de Aluminio/química , Benzopiranos/química , Níquel/química , Suelo , Adsorción , Sitios de Unión , Concentración de Iones de Hidrógeno , Espectrometría por Rayos X , Factores de Tiempo
20.
Environ Sci Technol ; 39(1): 188-94, 2005 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-15667094

RESUMEN

Acid mine drainage (AMD) contaminates surface water bodies, groundwater, soils, and sediments at innumerable locations around the world. AMD usually originates by weathering of pyrite (FeS2) and is rich in Fe and sulfate. In this study, we investigated speciation of FeII, FeIII, and SO4 in acid waters by Fourier transform infrared and X-ray absorption spectroscopy. The molalities of sulfate (15 mmol/ kg) and iron (10, 20, and 50 mmol/kg), and pH (1, 2, and 3) were chosen to mimic the concentration of ions in AMD waters. Sulfate and FeII either associate in outer-sphere complexes or do not associate at all. In contrast, sulfate interacts strongly with FeIII. The predominating species in FeIII-SO4 solutions are hydrogen-bonded complexes; inner-sphere complexes account only for 10+/-10% of the total sulfate. Our results show that the mode of interaction between FeIII and sulfate is similar in aqueous phase and in nanocrystalline precipitate schwertmannite (approximately FeO(OH)3/4(SO4)1/8). Because of this similarity, schwert-mannite should be the phase that controls solubility and availability of FeIII, SO4, and indirectly also other components in the AMD solutions.


Asunto(s)
Hierro/química , Sulfatos/química , Contaminantes del Agua/análisis , Precipitación Química , Concentración de Iones de Hidrógeno , Minería , Solubilidad , Ácidos Sulfúricos/química , Agua/química
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