Environmentally stable common bean genotypes for production in different agro-ecological zones of Tanzania.

Genotype by environment interaction (GxE) complicates the process of selecting genotypes suitable for quantitative traits like seed yield in beans, hence slows down the development and release of varieties by breeding programs. GxE study on seed yield in beans enables identification of stable genotypes across sites and best site(s) for discriminating the tested genotypes in terms of seed yield. The purpose of this study was to evaluate the influence of the environment, genotype, and genotype by environment interaction on seed yield stability and adaptability of common bean landraces, lines, and improved varieties across three different agro-ecologies in Tanzania. The 99 common bean genotypes (Landraces, lines, and improved varieties) were planted following alpha lattice design in three replications each contained five blocks with 20 plots. Soil properties from the experimental sites, days to 75% flowering, Seed yield, 100 seed weight, number of seeds/pod, and number of pods/plant were recorded. Data on seed yield and its components were analyzed using Additive main effect and multiplicative interaction (AMMI), genotype main effects plus genotype × environment interaction (GGE), and yield stability index (YSI). The AMMI revealed very highly significant (P ≤ 0.001) effects of genotypes, environmental, and genotype × environment interaction on all the traits. AMMI analysis revealed that genotype main effects accounted for 39.3% of the total sum square of seed yield, whereas the environment and genotype × environmental interaction accounted for 31.4% and 26.8 % respectively. Genotype main effects largely influenced the variation in days to 75% flowering (55.5%), number of pods/plant (49.2%), number of seeds/pod (73.3%), and 100 seed weight (71.2%). Among soil properties recorded, available soil phosphorus, soil pH, soil exchangeable K, Ca, and Na had a strong positive association with common bean seed yield, while soil organic carbon and total nitrogen exhibited a strong negative association with seed yield. GGE revealed that E1 (TARI-Selian) was the most discriminative and representative site for common bean genotypes seed yield. Based on the yield stability index, the most stable and high seed yielding genotypes were ACC 714, Selian 14, Selian 9, Katuku, and Msolini. The identified high seed yielding and stable genotypes can be further tested in participatory variety selection involving farmers and later on released as varieties and can also be used for different breeding purposes in different agro-ecologies of Tanzania.

Linking rhizosphere bacterial diversity and soil fertility in tobacco plants under different soil types and cropping pattern in Tanzania: A pilot study.

Tobacco (Nicotiana tabacum L.), one of the major crop plants in Tanzania, cropping affects the level of soil fertility, but the reason has not been known. Plant rhizosphere plays an important role in affecting soil fertility through changing microbial composition. We planned a pilot study to understand the changes in microbial composition and soil nutrients in the rhizosphere soils of tobacco in three agro-ecological zone, namely Sikonge, Tabora and Urambo in Tanzania. This study assessed bacteriota composition using 16S rRNA sequencing and soil fertility in the rhizosphere of tobacco plants. The results showed that bacterial diversity in tobacco rhizosphere soils belonged to Proteobacteria phyla, associated significantly (p < 0.05) with solubilization of insoluble P, K and S. The solubilization of P, K and S in soils facilitates the availability of these nutrients to the tobacco plants (a heavy feeder crop) allows low levels of these nutrients in the soils for the subsequent crop. The Proteobacteria phyla also associated with an increase in soil N content through fixation. Therefore, bacteria diversity in tobacco rhizosphere influence solubilities of macronutrients (P, K, S) and quickly up taken by the tobacco plant and reduces their levels in soils, some bacteria involved in fixing N and increases total N in the soil.

Multilocation dataset on seed Fe and Zn contents of bean (Phaseolus vulgaris L.) genotypes grown in Tanzania.

There are over a hundred genotypes of Phaseolus vulgaris L. grown and consumed in Tanzania. Currently, identification of bean genotypes containing high seed iron and zinc contents has been the focus globally for common bean iron and zinc biofortification. Diversity in seed iron and zinc contents were investigated in 99 bean genotypes grown in Tanzania to identify high seed iron and zinc-containing genotypes for use in iron and zinc biofortification. Flour obtained by grinding seeds of each bean genotypes was used in the determination of iron and zinc concentrations. Data were subjected to analysis of variance (ANOVA) to determine significant differences among common bean genotypes in terms of seed iron and zinc contents. Additive main effects and multiplicative interaction (AMMI) and genotype plus genotype by environment interaction (GGE) were conducted to determine stability and adaptation across sites (TARI-Selian, SUA, and TARI-Uyole) of bean genotypes in terms of seed iron and zinc contents. Data in this data article show that some landraces had high seed iron and zinc contents compared to release varieties thus can be used for iron and zinc genetic biofortification in common beans breeding programs. For more explanation of the data presented in this data article, please follow the related research article "Environmental and genotypes influence on seed iron and zinc levels of landraces and improved varieties of common bean (Phaseolus vulgaris L.) in Tanzania" [1].

Intensification of common bean and maize production through rotations to improve food security for smallholder farmers.

A field experiment was conducted to understand whether non-formalized monocultures of maize could be substituted by the rotations with common bean on smallholder farms. This study was installed in the northern highlands of Tanzania along the slopes of the highest African peak of Mt. Kilimanjaro with the predominance of smallholder farmers. Cropping seasons (S), cropping systems (C), bean varieties (V), and their interactions were evaluated. Data collected were plant height, ground coverage, total biomass, number of pods per bean and seeds per pod, 100-seed weight, and grain yield. Results indicated that bean in long rainy seasons produced significantly larger grain yields as an effect of S (3.3 t ha-1) in 2015, C (3.4 t ha-1) in intercrop, V (2.7 t ha-1) in local bean, S × C (4.4 t ha-1) in 2015 in intercrop, S × V (3.4 t ha-1) in improved bean in 2015, C × V (4.6 t ha-1) in intercropped local bean, and S × C × V (5.0 t ha-1) in intercropped local bean in 2017. In a short rainy season, significantly larger bean grain yield (1.8 t ha-1) was recorded as an effect of C when sown subsquent to maize. The effects of V and/or C × V were not significant on bean grain yield during short rainy season. Maize in long rainy seasons produced significantly larger grain yields as an effect of C (2.9 t ha-1) but not for S and S × C in rotation with the local bean. In short rainy seasons, significantly larger maize grain yield was produced in 2015 (2.6 t ha-1) but the effects of C and S × C were not significant in 2015 and 2016. This study concluded that inclusion of intercrops (of maize and common bean) as part of a rotation with one of these crops significantly improved grain yields and hence provided promising grounds of the options for sustainable food production on smallholder farms.

Status and Epidemiology of Maize Lethal Necrotic Disease in Northern Tanzania.

Sustainable control of plant diseases requires a good understanding of the epidemiological aspects such as the biology of the causal pathogens. In the current study, we used RT-PCR and Next Generation Sequencing (NGS) to contribute to the characterization of maize lethal necrotic (MLN) viruses and to identify other possible viruses that could represent a future threat in maize production in Tanzania. RT-PCR screening for Maize Chlorotic Mottle Virus (MCMV) detected the virus in the majority (97%) of the samples (n=223). Analysis of a subset (n=48) of the samples using NGS-Illumina Miseq detected MCMV and Sugarcane Mosaic Virus (SCMV) at a co-infection of 62%. The analysis further detected Maize streak virus with an 8% incidence in samples where MCMV and SCMV were also detected. In addition, signatures of Maize dwarf mosaic virus, Sorghum mosaic virus, Maize yellow dwarf virus-RMV and Barley yellow dwarf virus were detected with low coverage. Phylogenetic analysis of the viral coat protein showed that isolates of MCMV and SCMV were similar to those previously reported in East Africa and Hebei, China. Besides characterization, we used farmers' interviews and direct field observations to give insights into MLN status in different agro-ecological zones (AEZs) in Kilimanjaro, Mayara, and Arusha. Through the survey, we showed that the prevalence of MLN differed across regions (P = 0.0012) and villages (P < 0.0001) but not across AEZs (P > 0.05). The study shows changing MLN dynamicsin Tanzania and emphasizes the need for regional scientists to utilize farmers' awareness in managing the disease.

Identification and Management Challenges Associated with Ralstonia solanacearum (Smith), Causal Agent of Bacterial Wilt Disease of Tomato in Sub-Saharan Africa.

Tomato is the world's most consumed vegetable crop after potato and it is source of vitamins, minerals, fiber, lycopene, ß-carotene and income. Despite its significant importance tomato can heavily be attacked by different pathogens including Ralstonia solanacearum that incites bacteria wilt disease. The disease is very devastating causing a considerable yield loss worldwide. The pathogen can survive in plant debris, infected plants and host weeds and spread from one field to another by irrigation or flood water, soil, farm equipment and workers and weeds which usually grow along waterways and it is difficult to manage due to complication in biology, nature of infestation and wide host range. In areas like the Sub-Saharan Africa where there exists a wide diversity of plant species, the pathogen becomes even more difficult to manage. It is on this basis that this review article, clearly discusses challenges for bacterial wilt disease identification and management in tomato farming systems with respect to the diagnosis methods used, pathogen genetic diversity and host range and pathogen survival mechanisms under different environment. The information will empower the responsible personnel involved in tomato production chain to have clear information about the pathogen and management options available against the disease in Sub-Saharan Africa.

Antioxidant, antimicrobial and antiverotoxic potentials of extracts of Curtisia dentata.

ETHNOPHARMACOLOGICAL RELEVANCE: There is an increase in antimicrobial resistance and complexities arising from verotoxic related bacterial infections as well as rise in demand for application of natural antioxidants to combat oxidative damage by free radicals in many oxidative stress-mediated disease conditions such as cancer. Thus the potential of Curtisia dentata as antimicrobial, antioxidant and antiverotoxin against environmental isolates of Escherichia coli and Acinetobacter spp. as well as the presence of phytochemicals and some organic compounds, was determined. MATERIALS AND METHODS: Phytochemical analysis was carried out using standard methods and antioxidant activity was determined using the DPPH radical scavenging activity. Effect of extracts on bacterial cell wall was also determined. RESULTS: Extracts contained anthraquinones, alkaloids, essential oils, glycosides, phenols, steroids, saponins, tannins, quinones, anthocyanins, amines and carboxylic acids as phytochemicals. Extracts demonstrated high antimicrobial activity and low minimum inhibitory concentrations as well as inhibitory action against the expression of both Vtx1 and Vtx2 genes in Escherichia coli, Acinetobacter haemolyticus and Acinetobacter lwoffii. Ethanol root bark extracts consistently showed the highest DPPH radical scavenging activity (62.43%), total phenol content (TPH) (57.62 26 mg GAE/g) and reducing power (RP) (41.32%), followed by those of the stem bark and leaf extracts with the respective values of 54.68%, 37.77 mg GAE/g and 21.83%. The extracts induced the leakage of Na(+) and K(+) ions from both test bacteria. CONCLUSION: Curtisia dentata is a very effective source of antioxidant and a possible alternative to sourcing antiverotoxic antibiotics with novel mechanism of action.

Virulence, resistance genes, and transformation amongst environmental isolates of Escherichia coli and Acinetobacter spp.

The association of verotoxic E. coli and Acinetobacter spp. with various antibiotic-resistant, diarrhogenic, and nosocomial infections has been a cause for concern worldwide. E. coli and A. haemolyticus isolated on a number of selective media were screened for virulence factors, antibiotic resistance, and transformation of resistance genes. Out of 69 E. coli isolates obtained, 25 (35.23%), 14 (20.30%), and 28 (40.58%) were positive for Vtx1&2, Vtx1, and Vtx2, respectively, 49 (71.015%) for extendedspectrum beta-lactamases (ESBLs), 34 (49.28%) for serum resistance, 57 (82.61%) for cell surface hydrophobicity, 48 (69.57%) for gelatinase production, and 37 (53.62%) for hemolysin production. For the 14 A. haemolyticus isolates, only 2 (14.29%) in each case from all the samples investigated were positive for Vtx1, Vtx2 and Vtx1&2 respectively, 8 (57.14%) for ESBLs, 7 (50.00%) for serum resistance, 11 (78.57%) for cell surface hydrophobicity, 4 (28.57%) for gelatinase production, and 8 (57.14%) for hemolysin production. Although transformation occurred among the E. coli and Acinetobacter isolates (transformation frequency: 13.3 × 10(-7) -53.4(-7)), there was poor curing of the plasmid genes, a confirmation of the presence of stable antibiotic-resistant genes (DNA concentration between 42.7 and 123.8 microgram) and intragenetic transfer of multidrugresistant genes among the isolates. The isolates were potentially virulent and contained potentially transferable antibiotic resistance genes. Detection of virulence factors, antibiotic resistance genes, and transformation among these isolates is a very significant outcome that will influence approaches to proactive preventive and control measures and future investigations. However, continued surveillance for drug resistance among these bacteria and further investigation of the mechanism of action of their virulence factors are a necessity.

The ecology, biology and pathogenesis of Acinetobacter spp.: an overview.

Acinetobacter are a major concern because of their rapid development of resistance to a wide range of antimicrobials, and rapid profundity in transformation, surviving desiccation and persisting in the environment for a very long time. The organisms are associated with bacteraemia, pulmonary infections, meningitis, diarrhea and notorious nosocomial infections with mortality rates of 20 to 60%. Transmission is via person-to-person contact, water and food contamination, and contaminated hospital equipment. The increasing virulence and rapid development of multidrug resistance by these organisms highlights the need to search for alternatives for chemotherapy. A poor understanding of the organisms and dearth of information about their occurrence especially in developing countries informed the need for this review paper.