Variants of a major DNA satellite discriminate parental subgenomes in a hybrid parthenogenetic lizard Darevskia unisexualis (Darevsky, 1966).

Hybrid parthenogenetic animals are an exceptionally interesting model for studying the mechanisms and evolution of sexual and asexual reproduction. A diploid parthenogenetic lizard Darevskia unisexualis is a result of an ancestral cross between a maternal species Darevskia raddei nairensis and a paternal species Darevskia valentini and presents a unique opportunity for a cytogenetic and computational analysis of a hybrid karyotype. Our previous results demonstrated a significant divergence between the pericentromeric DNA sequences of the parental Darevskia species; however, an in-depth comparative study of their pericentromeres is still lacking. Here, using target sequencing of microdissected pericentromeric regions, we reveal and compare the repertoires of the pericentromeric tandem repeats of the parental Darevskia lizards. We found species-specific sequences of the major pericentromeric tandem repeat CLsat, which allowed computational prediction and experimental validation of fluorescent DNA probes discriminating parental chromosomes within the hybrid karyotype of D. unisexualis. Moreover, we have implemented a generalizable computational method, based on the optimization of the Levenshtein distance between tandem repeat monomers, for finding species-specific fluorescent probes for pericentromere staining. In total, we anticipate that our comparative analysis of Darevskia pericentromeric repeats, the species-specific fluorescent probes that we found and the pipeline that we developed will form a basis for the future detailed cytogenomic studies of a wide range of natural and laboratory hybrids.

Perifocal Zone of Brain Gliomas: Application of Diffusion Kurtosis and Perfusion MRI Values for Tumor Invasion Border Determination.

(1) Purpose: To determine the borders of malignant gliomas with diffusion kurtosis and perfusion MRI biomarkers. (2) Methods: In 50 high-grade glioma patients, diffusion kurtosis and pseudo-continuous arterial spin labeling (pCASL) cerebral blood flow (CBF) values were determined in contrast-enhancing area, in perifocal infiltrative edema zone, in the normal-appearing peritumoral white matter of the affected cerebral hemisphere, and in the unaffected contralateral hemisphere. Neuronavigation-guided biopsy was performed from all affected hemisphere regions. (3) Results: We showed significant differences between the DKI values in normal-appearing peritumoral white matter and unaffected contralateral hemisphere white matter. We also established significant (p < 0.05) correlations of DKI with Ki-67 labeling index and Bcl-2 expression activity in highly perfused enhancing tumor core and in perifocal infiltrative edema zone. CBF correlated with Ki-67 LI in highly perfused enhancing tumor core. One hundred percent of perifocal infiltrative edema tissue samples contained tumor cells. All glioblastoma samples expressed CD133. In the glioblastoma group, several normal-appearing white matter specimens were infiltrated by tumor cells and expressed CD133. (4) Conclusions: DKI parameters reveal changes in brain microstructure invisible on conventional MRI, e.g., possible infiltration of normal-appearing peritumoral white matter by glioma cells. Our results may be useful for plotting individual tumor invasion maps for brain glioma surgery or radiotherapy planning.

Structure and Frictional Properties of Ultrahard AlMgB14 Thin Coatings.

This paper presents the results of studies on AlMgB14-based ceramic coatings deposited on WC-Co hard alloy substrates using RF plasma sputtering. The aim of this work is to study the structure, phase composition, and mechanical properties of AlMgB14-based coatings depending on the sputtering mode. According to the results of the microstructural study, the bias voltage applied to the substrate during the sputtering process significantly contributed to the formation of the coating morphology. Based on the results of compositional and structural studies by energy dispersive X-ray spectroscopy, X-ray diffraction, and Raman spectroscopy, it was found that the coatings are composed of nanocrystalline B12 icosahedrons distributed in an amorphous matrix consisting of Al, Mg, B, and O elements. The nanohardness of the coatings varied from 24 GPa to 37 GPa. The maximum value of the hardness together with the lowest coefficient of friction (COF) equal to 0.12 and wear resistance of 7.5 × 10-5 mm3/N·m were obtained for the coating sputtered at a bias voltage of 100 V. Compared with the COF of the original hard alloy substrate, which is equal to 0.31, it can be concluded that the AlMgB14-based coatings could reduce the COF of WC-based hard alloys by more than two times. The hardness and tribological properties of the coatings obtained in this study are in good agreement with the properties of AlMgB14-based materials obtained by other methods reported in the literature.

IL-38 blockade induces anti-tumor immunity by abrogating tumor-mediated suppression of early immune activation.

Immune checkpoint inhibitors that overcome T cell suppressive mechanisms in tumors have revolutionized the treatment of cancer but are only efficacious in a small subset of patients. Targeting suppressive mechanisms acting on innate immune cells could significantly improve the incidence of clinical response by facilitating a multi-lineage response against the tumor involving both adaptive and innate immune systems. Here, we show that intra-tumoral interleukin (IL)-38 expression is a feature of a large frequency of head and neck, lung and cervical squamous cancers and correlates with reduced immune cell numbers. We generated IMM20324, an antibody that binds human and mouse IL-38 proteins and inhibits the binding of IL-38 to its putative receptors, interleukin 1 receptor accessory protein-like 1 (IL1RAPL) and IL-36R. In vivo, IMM20324 demonstrated a good safety profile, delayed tumor growth in a subset of mice in an EMT6 syngeneic model of breast cancer, and significantly inhibited tumor expansion in a B16.F10 melanoma model. Notably, IMM20324 treatment resulted in the prevention of tumor growth following re-implantation of tumor cells, indicating the induction of immunological memory. Furthermore, exposure of IMM20324 correlated with decreased tumor volume and increased levels of intra-tumoral chemokines. Together, our data suggest that IL-38 is expressed in a high frequency of cancer patients and allows tumor cells to suppress anti-tumor immunity. Blockade of IL-38 activity using IMM20324 can re-activate immunostimulatory mechanisms in the tumor microenvironment leading to immune infiltration, the generation of tumor-specific memory and abrogation of tumor growth.

Optical Characterization of Thin Films by Surface Plasmon Resonance Spectroscopy Using an Acousto-Optic Tunable Filter.

The paper presents the application of the acousto-optic tunable filter (AOTF) in surface plasmon resonance (SPR) spectroscopy to measure the optical thickness of thin dielectric coatings. The technique presented uses combined angular and spectral interrogation modes to obtain the reflection coefficient under the condition of SPR. Surface electromagnetic waves were excited in the Kretschmann geometry, with the AOTF serving as a monochromator and polarizer of light from a white broadband radiation source. The experiments highlighted the high sensitivity of the method and the lower amount of noise in the resonance curves compared with the laser light source. This optical technique can be implemented for nondestructive testing in the production of thin films in not only the visible, but also the infrared and terahertz ranges.

Development of Glioblastoma from Stem Cells to a Full-Fledged Tumor.

OBJECTIVE: IDH wild-type glioblastomas (GBM) are one of the most malignant and complex tumors for treatment. The urgent question of new therapeutic and diagnostic tools searching should be resolved based on cellular and molecular pathogenesis mechanisms, which remain insufficiently studied. In this study, we aimed to investigate GBM pathogenesis. MATERIAL AND METHOD: /b > Using the isolation of different GBM cell populations and the cell cultures, animal models, and molecular genetic methods, we tried to clarify the picture of GBM pathogenesis by constructing a projection from different glioma stem cells types to an integral neoplasm. RESULTS: We have shown a potential transformation pathway for both glioma stem cells and four definitive cell populations during gliomagenesis. Moreover, we have characterized each population, taking into account its place in the pathogenetic continuum, with a description of the most fundamental molecular and functional properties. CONCLUSION: Finally, we have formed a complex holistic concept of the pathogenetic evolution of GBM at the cell-population level by integrating our results with the data of the world literature.

Experimental and Theoretical Study of Ultra-Hard AlMgB14-TiB2 Composites: Structure, Hardness and Self-Lubricity.

It is known that the presence of oxygen phases in hard materials leads to an undesirable decrease in the mechanical properties. In materials based on AlMgB14, the main oxygen impurity is spinel MgAl2O4; it significantly reduces the hardness of AlMgB14 and its formation during sintering is inevitable. In this work, the ultra-hard spark plasma sintered (SPSed) AlMgB14-TiB2 composite material was fabricated from the AlMgB14-TiB2 precursor obtained by self-propagating high-temperature synthesis (SHS). Due to the high synthesis temperatures, the main oxygen phase in the obtained composite was Al4B2O9 instead of spinel MgAl2O4. It was found that the obtained composite has excellent mechanical properties. The maximum hardness of the sample is 44.1 GPa. The presence of oxygen in the form of the Al4B2O9 phase led to unexpected results: the friction coefficient of the obtained AlMgB14-TiB2 composite under dry conditions against the Al2O3 counter-specimen is approximately four times lower than the friction coefficient of pure ceramic AlMgB14 (0.18 against 0.7, respectively). Based on the observed results, it was found that the Al4B2O9 particles formed during the SHS are responsible for the low friction coefficient. The quantum chemical calculations showed that the elastic moduli of Al4B2O9 are significantly smaller than the elastic moduli of AlMgB14 and TiB2. Thus, during sliding, Al4B2O9 particles are squeezed out onto the composite surface, form the lubricating layer and reduce the friction coefficient.

Acousto-Optic Modulation and Deflection of Terahertz Radiation.

It is known that one of the ways to increase the energy efficiency of acousto-optic devices is to use ultrasound beams with a higher power density. It has been established experimentally that the use of a partially electroded ultrasonic transducer significantlyincreases the energy efficiency of the acousto-optic modulator of terahertz radiation. In addition, the operation of an acousto-optic deflector of terahertz radiation with the use of a sectioned ultrasound transducer was theoretically investigated. It showed that a deflector of this kind enables one to achieve higher angular resolution.

On the Tensile Strength of Spark Plasma Sintered AlMgB14 Ceramics.

In this work, the structure, phase composition, hardness and tensile strength of the AlMgB14-based material obtained by spark plasma sintering (SPS) were investigated. According to the XRD results, the spark plasma sintered material contains 94 wt% AlMgB14 phase and 6 wt% spinel MgAl2O4. Analysis of the SEM images showed that the obtained AlMgB14 sample has a dense structure; the relative density of the sample is 98.6%. The average microhardness of the spark plasma sintered (SPSed) sample is 29 ± 0.88 GPa. According to the results of the Brazilian test, the tensile strength of AlMgB14 is 56 MPa. The fracture is characterized by a single straight tensile crack that divides the sample along the compression line into two halves. The type of fracture in the AlMgB14 sample can be characterized as a cleavage fracture due to crack growth occurring in accordance with the transcrystalline fracture. The tensile strength of the obtained material is in good agreement with the tensile strength of boride and oxide ceramics studied in other works.

Fabrication of Conductive Tissue Engineering Nanocomposite Films Based on Chitosan and Surfactant-Stabilized Graphene Dispersions.

Chitosan (CS)/graphene nanocomposite films with tunable biomechanics, electroconductivity and biocompatibility using polyvinylpyrrolidone (PVP) and Pluronic F108 (Plu) as emulsion stabilizers for the purpose of conductive tissue engineering were successfully obtained. In order to obtain a composite solution, aqueous dispersions of multilayered graphene stabilized with Plu/PVP were supplied with CS at a ratio of CS to stabilizers of 2:1, respectively. Electroconductive films were obtained by the solution casting method. The electrical conductivity, mechanical properties and in vitro and in vivo biocompatibility of the resulting films were assessed in relation to the graphene concentration and stabilizer type and they were close to that of smooth muscle tissue. According to the results of the in vitro cytotoxicity analysis, the films did not release soluble cytotoxic components into the cell culture medium. The high adhesion of murine fibroblasts to the films indicated the absence of contact cytotoxicity. In subcutaneous implantation in Wistar rats, we found that stabilizers reduced the brittleness of the chitosan films and the inflammatory response.

Phase Composition, Structure and Properties of the Spark Plasma Sintered Ceramics Obtained from the Al12Mg17-B-Si Powder Mixtures.

In this work, composite materials were obtained by spark plasma sintering of an Al12Mg17-B-Si powder mixture. The structure, phase composition, and mechanical properties of the obtained composites were studied. It was found that various compounds based on B12 icosahedrons, such as AlB12, B4Si, and B6Si, are formed during spark plasma sintering. Based on the SEM images and results of XRD analysis of the obtained specimens, a probable scheme for the formation of the phase composition of composite materials during spark plasma sintering was proposed. An increase in the Al12Mg17-B powder content in the initial mixture from 30 to 70 wt% leads to an increase in hardness from 16.55 to 21.24 GPa and a decrease in the friction coefficient and wear rate from 0.56 to 0.32 and 13.60 to 5.60 10-5 mm-3/(N/m), respectively.

IMM-BCP-01, a patient-derived anti-SARS-CoV-2 antibody cocktail, is active across variants of concern including Omicron BA.1 and BA.2.

Monoclonal antibodies are an efficacious therapy against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, rapid viral mutagenesis led to escape from most of these therapies, outlining the need for an antibody cocktail with a broad neutralizing potency. Using an unbiased interrogation of the memory B cell repertoire of patients with convalescent COVID-19, we identified human antibodies with broad antiviral activity in vitro and efficacy in vivo against all tested SARS-CoV-2 variants of concern, including Delta and Omicron BA.1 and BA.2. Here, we describe an antibody cocktail, IMM-BCP-01, that consists of three patient-derived broadly neutralizing antibodies directed at nonoverlapping surfaces on the SARS-CoV-2 Spike protein. Two antibodies, IMM20184 and IMM20190, directly blocked Spike binding to the ACE2 receptor. Binding of the third antibody, IMM20253, to its cryptic epitope on the outer surface of RBD altered the conformation of the Spike Trimer, promoting the release of Spike monomers. These antibodies decreased Omicron SARS-CoV-2 infection in the lungs of Syrian golden hamsters in vivo and potently induced antiviral effector response in vitro, including phagocytosis, ADCC, and complement pathway activation. Our preclinical data demonstrated that the three-antibody cocktail IMM-BCP-01 could be a promising means for preventing or treating infection of SARS-CoV-2 variants of concern, including Omicron BA.1 and BA.2, in susceptible individuals.

Effect of Mechanical Activation of Al-Ti-B Powder Mixture on Phase Composition and Structure of Al-TiB2 Composite Materials Obtained by Self-Propagating High-Temperature Synthesis (SHS).

In this study, we successfully obtained Al-TiB2 composite materials using self-propagating high-temperature synthesis and preliminary mechanical activation of the initial Al-(Ti + 2B) powder mixture with a high aluminum content (70 wt.%). We investigated the possibility of controlling the structure of synthesis products, in particular, the size and shape of ceramic particles. We examined the effects of the mechanical activation of the initial powder mixture on the structure and particle size of titanium diboride in the synthesis products. We proposed a mechanism of structure formation in the synthesis products obtained by SHS using the method of preliminary mechanical activation of the initial mixture. We found that mechanical activation for 60-180 s led to the formation of isolated TiB2 particles of prolate and irregular shape. The average particle size of TiB2 in the synthesis products was 0.77 (after 60 s of mechanical activation) and 1.5 µm (after 180 s of mechanical activation), respectively. An increase in the duration of mechanical activation to 900 s led to the formation of an island (skeletal) structure, in which there were interconnected aggregates and isolated particles of titanium diboride. The average size of these particles was 4.3 µm.

Optimal Design of an Ultrasound Transducer for Efficient Acousto-Optic Modulation of Terahertz Radiation.

Acousto-optic (AO) interaction in the terahertz range was investigated with the use of monolithic ultrasound transducers of various widths. Sulfur hexafluoride (SF6) liquefied at a temperature of about 23 °C and a pressure of 25 bar was used as a medium for AO interaction. The angular and frequency bandwidths of effective AO interaction, as well as the diffraction efficiency per 1 W of the driving electric power, were determined. For the first time, a correct comparison of the AO diffraction efficiency in SF6 with the use of ultrasound transducers with different widths was carried out. In the experiments performed, the highest energy efficiency of the AO modulator was achieved with a transducer with a width of 12 mm.

Proof of concept for the sapphire scalpel combining tissue dissection and optical diagnosis.

OBJECTIVES: The development of compact diagnostic probes and instruments with an ability to direct access to organs and tissues and integration of these instruments into surgical workflows is an important task of modern physics and medicine. The need for such tools is essential for surgical oncology, where intraoperative visualization and demarcation of tumor margins define further prognosis and survival of patients. In this paper, the possible solution for this intraoperative imaging problem is proposed and its feasibility to detect tumorous tissue is studied experimentally. METHODS: For this aim, the sapphire scalpel was developed and fabricated using the edge-defined film-fed growth technique aided by mechanical grinding, polishing, and chemical sharpening of the cutting edge. It possesses optical transparency, mechanical strength, chemical inertness, and thermal resistance alongside the presence of the as-grown hollow capillary channels in its volume for accommodating optical fibers. The rounding of the cutting edge exceeds the same for metal scalpels and can be as small as 110 nm. Thanks to these features, sapphire scalpel combines tissue dissection with light delivering and optical diagnosis. The feasibility for the tumor margin detection was studied, including both gelatin-based tissue phantoms and ex vivo freshly excised specimens of the basal cell carcinoma from humans and the glioma model 101.8 from rats. These tumors are commonly diagnosed either non-invasively or intraoperatively using different modalities of fluorescence spectroscopy and imaging, which makes them ideal candidates for our feasibility test. For this purpose, fiber-based spectroscopic measurements of the backscattered laser radiation and the fluorescence signals were carried out in the visible range. RESULTS: Experimental studies show the feasibility of the proposed sapphire scalpel to provide a 2-mm-resolution of the tumor margins' detection, along with an ability to distinguish the tumor invasion region, which results from analysis of the backscattered optical fields and the endogenous or exogenous fluorescence data. CONCLUSIONS: Our findings justified a strong potential of the sapphire scalpel for surgical oncology. However, further research and engineering efforts are required to optimize the sapphire scalpel geometry and the optical diagnosis protocols to meet the requirements of oncosurgery, including diagnosis and resection of neoplasms with different localizations and nosologies.

Cell-Population Dynamics in Diffuse Gliomas during Gliomagenesis and Its Impact on Patient Survival.

Diffuse gliomas continue to be an important problem in neuro-oncology. To solve it, studies have considered the issues of molecular pathogenesis from the intratumoral heterogeneity point. Here, we carried out a comparative dynamic analysis of the different cell populations' content in diffuse gliomas of different molecular profiles and grades, considering the cell populations' functional properties and the relationship with patient survival, using flow cytometry, immunofluorescence, multiparametric fluorescent in situ hybridization, polymerase chain reaction, and cultural methods. It was shown that an increase in the IDH-mutant astrocytomas and oligodendrogliomas malignancy is accompanied by an increase in stem cells' proportion and mesenchymal cell populations' appearance arising from oligodendrocyte-progenitor-like cells with cell plasticity and cells' hypoxia response programs' activation. In glioblastomas, malignancy increase is accompanied by an increase in both stem and definitive cells with mesenchymal differentiation, while proneuronal glioma stem cells are the most likely the source of mesenchymal glioma stem cells, which, in hypoxic conditions, further give rise to mesenchymal-like cells. Clinical confirmation was a mesenchymal-like cell and mesenchymal glioma stem cell number, and the hypoxic and plastic molecular programs' activation degree had a significant effect on relapse-free and overall survival. In general, we built a multi-vector model of diffuse gliomas' pathogenetic tracing up to the practical plane.

DNA Environment of Centromeres and Non-Homologous Chromosomes Interactions in Mouse.

Although the pericentromeric regions of chromosomes that are enriched in tandemly repeated satellite DNA represent a significant part of eukaryotic genomes, they remain understudied, which is mainly due to interdisciplinary knowledge gaps. Recent studies suggest their important role in genome regulation, karyotype stability, and evolution. Thus, the idea of satellite DNA as a junk part of the genome has been refuted. The integration of data regarding molecular composition, chromosome behaviour, and the details of the in situ organization of pericentromeric regions is of great interest. The objective of this work was a cytogenetic analysis of the interactions between pericentromeric regions from non-homologous chromosomes in mouse spermatocytes using immuno-FISH. We analysed two events: the associations between centromeric regions of the X chromosome and autosomes and the associations between the centromeric regions of the autosomal bivalents that form chromocenters. We concluded that the X chromosome forms temporary synaptic associations with different autosomes in early meiotic prophase I, which can normally be found until the pachytene-diplotene, without signs of pachytene arrest. These associations are formed between the satellite-DNA-rich centromeric regions of the X chromosome and different autosomes but do not involve the satellite-DNA-poor centromeric region of the Y chromosome. We suggest the hypothetical model of X chromosome competitive replacement from such associations during synaptic correction. We showed that the centromeric region of the X chromosome in association remains free of γH2Ax-dependent chromatin inactivation, while the Y chromosome is completely inactivated. This finding highlights the predominant role of associations between satellite DNA-rich regions of different chromosomes, including the X chromosome. We suppose that X-autosomal transient associations are a manifestation of an additional synaptic disorder checkpoint. These associations are normally corrected before the late diplotene stage. We revealed that the intense spreading conditions that were applied to the spermatocyte I nuclei did not lead to the destruction of stretched chromatin fibers of elongated chromocenters enriched in satellite DNA. The tight associations that we revealed between the pericentromeric regions of different autosomal bivalents and the X chromosome may represent the basis for a mechanism for maintaining the repeats stability in the autosomes and in the X chromosome. The consequences of our findings are discussed.

AlN Production in Co-Flow Filtration Mode at Low Pressures.

In this work, the process for obtaining aluminum nitride in the combustion mode of co-flow filtration of a nitrogen-argon mixture was investigated. The combustion of granules consisting of aluminum and aluminum nitride as an inert diluent was studied under conditions of co-current filtration in a flow of nitrogen and a nitrogen-argon mixture in the range of a specific flow rate of 1.5-5.0 cm3/(s∙cm2). It was found that the specific flow rate of the gas mixture and the amount of argon in the nitrogen-argon mixture had a significant effect on the rate and the temperature of combustion. The structure and phase composition of the synthesis products were studied. The maximum achieved yield of the AlN phase was 95 wt.%. Moreover, this method is energy efficient and allows the production of metal nitrides without the use of high-pressure reactors.

Temperature Effects in an Acousto-Optic Modulator of Terahertz Radiation Based on Liquefied SF6 Gas.

The acousto-optic (AO) diffraction of terahertz (THz) radiation in liquefied sulfur hexafluoride (SF6) was investigated in various temperature regimes. It was found that with the increase in the temperature from +10 to +23 °C, the efficiency of the AO diffraction became one order higher at the same amplitude of the driving electrical signal. At the same time, the efficiency of the AO diffraction per 1 W of the sound power as well as the angular bandwidth of the efficient AO interaction were temperature independent within the measurement error. Increase of the resonant sound frequency with decreasing temperature and strong narrowing of the sound frequency bandwidth of the efficient AO interaction were detected.