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1.
NAR Genom Bioinform ; 6(3): lqae105, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-39165676

RESUMEN

Prokaryotes encode an arsenal of highly diverse immune systems to protect themselves against invading nucleic acids such as viruses, plasmids and transposons. This includes invader-interfering systems that neutralize invaders to protect their host, and abortive-infection systems, which trigger dormancy or cell death in their host to offer population-level immunity. Most prokaryotic immune systems are found across different environments and prokaryotic phyla, but their distribution appears biased and the factors that influence their distribution are largely unknown. Here, we compared and combined the prokaryotic immune system identification tools DefenseFinder and PADLOC to obtain an expanded view of the immune system arsenal. Our results show that the number of immune systems encoded is positively correlated with genome size and that the distribution of specific immune systems is linked to phylogeny. Furthermore, we reveal that certain invader-interfering systems are more frequently encoded by hosts with a relatively high optimum growth temperature, while abortive-infection systems are generally more frequently encoded by hosts with a relatively low optimum growth temperature. Combined, our study reveals several factors that correlate with differences in the distribution of prokaryotic immune systems and extends our understanding of how prokaryotes protect themselves from invaders in different environments.

2.
Cell ; 180(3): 427-439.e12, 2020 02 06.
Artículo en Inglés | MEDLINE | ID: mdl-32004461

RESUMEN

Cell polarity is fundamental for tissue morphogenesis in multicellular organisms. Plants and animals evolved multicellularity independently, and it is unknown whether their polarity systems are derived from a single-celled ancestor. Planar polarity in animals is conferred by Wnt signaling, an ancient signaling pathway transduced by Dishevelled, which assembles signalosomes by dynamic head-to-tail DIX domain polymerization. In contrast, polarity-determining pathways in plants are elusive. We recently discovered Arabidopsis SOSEKI proteins, which exhibit polar localization throughout development. Here, we identify SOSEKI as ancient polar proteins across land plants. Concentration-dependent polymerization via a bona fide DIX domain allows these to recruit ANGUSTIFOLIA to polar sites, similar to the polymerization-dependent recruitment of signaling effectors by Dishevelled. Cross-kingdom domain swaps reveal functional equivalence of animal and plant DIX domains. We trace DIX domains to unicellular eukaryotes and thus show that DIX-dependent polymerization is an ancient mechanism conserved between kingdoms and central to polarity proteins.


Asunto(s)
Arabidopsis/química , Arabidopsis/citología , Polaridad Celular/fisiología , Células Vegetales/fisiología , Polimerizacion , Dominios Proteicos , Animales , Arabidopsis/genética , Arabidopsis/crecimiento & desarrollo , Proteínas de Arabidopsis/química , Proteínas de Arabidopsis/metabolismo , Proteína Axina/química , Proteína Axina/metabolismo , Bryopsida/química , Bryopsida/citología , Bryopsida/genética , Bryopsida/crecimiento & desarrollo , Células COS , Chlorocebus aethiops , Proteínas Dishevelled/metabolismo , Células HEK293 , Humanos , Marchantia/química , Marchantia/citología , Marchantia/genética , Marchantia/crecimiento & desarrollo , Proteínas de la Membrana/química , Proteínas de la Membrana/metabolismo , Plantas Modificadas Genéticamente , Proteínas Represoras/metabolismo , Vía de Señalización Wnt
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