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1.
J Phys Chem B ; 117(27): 8150-8, 2013 Jul 11.
Artículo en Inglés | MEDLINE | ID: mdl-23768138

RESUMEN

Ion-specific effects on salting-in and salting-out of proteins, protein denaturation, as well as enzymatic activity are typically rationalized in terms of the Hofmeister series. Here, we demonstrate by means of NMR spectroscopy and molecular dynamics simulations that the traditional explanation of the Hofmeister ordering of ions in terms of their bulk hydration properties is inadequate. Using triglycine as a model system, we show that the Hofmeister series for anions changes from a direct to a reversed series upon uncapping the N-terminus. Weakly hydrated anions, such as iodide and thiocyanate, interact with the peptide bond, while strongly hydrated anions like sulfate are repelled from it. In contrast, reversed order in interactions of anions is observed at the positively charged, uncapped N-terminus, and by analogy, this should also be the case at side chains of positively charged amino acids. These results demonstrate that the specific chemical and physical properties of peptides and proteins play a fundamental role in ion-specific effects. The present study thus provides a molecular rationalization of Hofmeister ordering for the anions. It also provides a route for tuning these interactions by titration or mutation of basic amino acid residues on the protein surface.


Asunto(s)
Péptidos/química , Iones/química , Espectroscopía de Resonancia Magnética , Simulación de Dinámica Molecular , Oligopéptidos/química
2.
J Phys Chem B ; 117(21): 6394-402, 2013 May 30.
Artículo en Inglés | MEDLINE | ID: mdl-23627286

RESUMEN

Cationic specificity which follows the Hofmeister series has been established for the catalytic efficiency of haloalkane dehalogenase LinB by a combination of molecular dynamics simulations and enzyme kinetic experiments. Simulations provided a detailed molecular picture of cation interactions with negatively charged residues on the protein surface, particularly at the tunnel mouth leading to the enzyme active site. On the basis of the binding affinities, cations were ordered as Na(+) > K(+) > Rb(+) > Cs(+). In agreement with this result, a steady-state kinetic analysis disclosed that the smaller alkali cations influence formation and productivity of enzyme-substrate complexes more efficiently than the larger ones. A subsequent systematic investigation of two LinB mutants with engineered charge in the cation-binding site revealed that the observed cation affinities are enhanced by increasing the number of negatively charged residues at the tunnel mouth, and vice versa, reduced by decreasing this number. However, the cation-specific effects are overwhelmed by strong electrostatic interactions in the former case. Interestingly, the substrate inhibition of the mutant LinB L177D in the presence of chloride salts was 7 times lower than that of LinB wild type in glycine buffer. Our work provides new insight into the mechanisms of specific cation effects on enzyme activity and suggests a potential strategy for suppression of substrate inhibition by the combination of protein and medium engineering.


Asunto(s)
Hidrolasas/química , Sitios de Unión , Biocatálisis , Cationes/química , Cesio/química , Hidrolasas/genética , Hidrolasas/metabolismo , Cinética , Simulación de Dinámica Molecular , Mutagénesis Sitio-Dirigida , Potasio/química , Estructura Terciaria de Proteína , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Rubidio/química , Sodio/química
3.
J Am Chem Soc ; 134(24): 10039-46, 2012 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-22687192

RESUMEN

The specific binding sites of Hofmeister ions with an uncharged 600-residue elastin-like polypeptide, (VPGVG)(120), were elucidated using a combination of NMR and thermodynamic measurements along with molecular dynamics simulations. It was found that the large soft anions such as SCN(-) and I(-) interact with the polypeptide backbone via a hybrid binding site that consists of the amide nitrogen and the adjacent α-carbon. The hydrocarbon groups at these sites bear a slight positive charge, which enhances anion binding without disrupting specific hydrogen bonds to water molecules. The hydrophobic side chains do not contribute significantly to anion binding or the corresponding salting-in behavior of the biopolymer. Cl(-) binds far more weakly to the amide nitrogen/α-carbon binding site, while SO(4)(2-) is repelled from both the backbone and hydrophobic side chains of the polypeptide. The Na(+) counterions are also repelled from the polypeptide. The identification of these molecular-level binding sites provides new insights into the mechanism of peptide-anion interactions.


Asunto(s)
Iones/química , Péptidos/química , Secuencia de Aminoácidos , Aniones/química , Sitios de Unión , Enlace de Hidrógeno , Simulación de Dinámica Molecular , Resonancia Magnética Nuclear Biomolecular , Termodinámica
4.
J Phys Chem A ; 115(25): 6813-9, 2011 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-21469716

RESUMEN

Electrospray ionization of aqueous solutions of magnesium(II) acetate leads to microhydrated magnesium acetate cations of the type [(CH(3)COO)(2m-1)Mg(m)(H(2)O)(n)](+) with m = 1-4 and n = 0-4, which are characterized by mass spectrometry and, for the cluster with three water molecules, also by infrared multiphoton dissociation spectroscopy. Density functional theory is used to determine the energies of microhydration for the mononuclear species [(CH(3)COO)Mg(H(2)O)(n)](+) with n = 0-6 and the associated changes in molecular structure. While bidentate coordination of the acetato ligand is generally preferred, at higher values of n, a switch to a monodentate coordination becomes energetically competitive.


Asunto(s)
Acetatos/química , Gases/química , Magnesio/química , Compuestos Organometálicos/química , Agua/química , Cationes Bivalentes/química , Ligandos , Teoría Cuántica , Soluciones/química , Espectrofotometría Infrarroja
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