Cold Adapted Nitrosospira sp.: A Potential Crucial Contributor of Ammonia Oxidation in Cryosols of Permafrost-Affected Landscapes in Northeast Siberia.

Permafrost-affected landscape soils are rich in organic matter and contain a high fraction of organic nitrogen, but much of this organic matter remains inaccessible due to nitrogen limitation. Microbial nitrification is a key process in the nitrogen cycle, controlling the availability of dissolved inorganic nitrogen (DIN) such as ammonium and nitrate. In this study, we investigate the microbial diversity of canonical nitrifiers and their potential nitrifying activity in the active layer of different Arctic cryosols in the Lena River Delta in North-East Siberia. These cryosols are located on Samoylov Island, which has two geomorphological landscapes with mineral soils in the modern floodplain and organic-rich soils in the low-centered polygonal tundra of the Holocene river terrace. Microcosm incubations show that the highest potential ammonia oxidation rates are found in low organic soils, and the rates depend on organic matter content and quality, vegetation cover, and water content. As shown by 16S rRNA amplicon sequencing, nitrifiers represented 0.6% to 6.2% of the total microbial community. More than 50% of the nitrifiers belonged to the genus Nitrosospira. Based on PCR amoA analysis, ammonia-oxidizing bacteria (AOB) were found in nearly all soil types, whereas ammonia-oxidizing archaea (AOA) were only detected in low-organic soils. In cultivation-based approaches, mainly Nitrosospira-like AOB were enriched and characterized as psychrotolerant, with temperature optima slightly above 20 °C. This study suggests a ubiquitous distribution of ammonia-oxidizing microorganisms (bacteria and archaea) in permafrost-affected landscapes of Siberia with cold-adapted AOB, especially of the genus Nitrosospira, as potentially crucial ammonia oxidizers in the cryosols.

Optimisation of bioscrubber systems to simultaneously remove methane and purify wastewater from intensive pig farms.

The use of bioscrubber is attracting increasing attention for exhaust gas treatment in intensive pig farming. However, the challenge is to improve the methane (CH4) removal efficiency as well as the possibility of pig house wastewater treatment. Three laboratory-scale bioscrubbers, each equipped with different recirculation water types, livestock wastewater (10-times-diluted pig house wastewater supernatant), a methanotroph growth medium (10-times-diluted), and tap water, were established to evaluate the performance of CH4 removal and wastewater treatment. The results showed that enhanced CH4 removal efficiency (25%) can be rapidly achieved with improved methanotrophic activity due to extra nutrient support from the wastewater. The majority of the CH4 was removed in the middle to end part of the bioscrubbers, which indicated that CH4 removal could be potentially optimised by extending the length of the reactor. Moreover, 52-86% of the ammonium (NH4+-N), total organic carbon (TOC), and phosphate (PO43--P) removal were simultaneously achieved with CH4 removal in the present study. Based on these results, this study introduces a low-cost and simple-to-operate method to improve CH4 removal and simultaneously treat pig farm wastewater in bioscrubbers.

Influence of Anthropogenic Activities on Metals in Arctic Permafrost: A Characterization of Benchmark Soils on the Yamal and Gydan Peninsulas in Russia.

Permafrost-affected region in Russian Arctic is an important study area for investigating fate of trace metals in soils by geological processes and human-induced trace metals through atmospheric deposition. Two plots of soils in Yamal region were selected: Northern Trans-Urals area (PU1, PU2, PU3) adjacent to urban areas and Gydan Peninsula representing reference groups as natural landscapes (Yavai, Gyda, Enysei). The levels of most metals in Urals area were more than those in Gydan Peninsula. In soil profile, Histic horizon revealed the accumulation of most metals. Cd and Pb were classified as metals, which were transported by atmosphere from urban areas and accumulated in surficial organic layers. Gleying processes and cryogenic mass exchanges transported metals from bottom to top layers in mineral horizons. Moreover, gleying horizon functioned as a geochemical barrier for metal transporting below permafrost table. The levels of As, Mn, and Fe were obliviously higher than threshold limit values of Russian Siberia. However, these values cannot represent the natural hydromorphic soils in Arctic tundra. The Geoaccumulation Index (Igeo) were determined for assessing surface soil samples regarding to metals' pollution. The results suggested local geology pollution for Gydan Peninsula and atmospheric transport pollution for Urals area. More investigations with respect to trace metals behavior in permafrost-affected soil profile needed to be studied for understanding levels of trace metals with changes of active layer depth due to climate changing.

Biofilter with mixture of pine bark and expanded clay as packing material for methane treatment in lab-scale experiment and field-scale implementation.

Low methane (CH4) emission reduction efficiency (< 25%) has been prevalent due to inefficient biological exhaust gas treatment facilities in mechanic biological waste treatment plants (MBTs) in Germany. This study aimed to quantify the improved capacity of biofilters composed of a mixture of organic (pine bark) and inorganic (expanded clay) packing materials in reducing CH4 emissions in both a lab-scale experiment and field-scale implementation. CH4 removal performance was evaluated using lab-scale biofilter columns under varied inflow CH4 concentrations (70, 130, and 200 g m-3) and corresponding loading rates of 8.2, 4.76, and 3.81 g m-3 h-1, respectively. The laboratory CH4 removal rates (1.2-2.2 g m-3 h-1) showed positive correlation with the inflow CH4 loading rates (4-8.2 g m-3 h-1), indicating high potential for field-scale implementation. Three field-scale biofilter systems with the proposed mixture packing materials were constructed in an MBT in Neumünster, northern Germany. A relatively stable CH4 removal efficiency of 38-50% was observed under varied inflow CH4 concentrations of 28-39 g m-3 (loading rates of 1120-2340 g m-3 h-1) over a 24-h period. The CH4 removal rate was approximately 500-700 g m-3 h-1, which was significantly higher than relevant previously reported field-scale biofilter systems (16-50 g m-3 h-1). The present study provides a promising configuration of biofilter systems composed of a mixture of organic (pine bark) and inorganic (expanded clay) packing materials to achieve high CH4 emission reduction. Graphic abstract ᅟ.

Bioscrubber treatment of exhaust air from intensive pig production: Case study in northern Germany at mild climate condition.

Treatment by field-scale bioscrubber of exhaust air, including ammonia (NH3) and the greenhouse gases methane (CH4), nitrous oxide (N2O), and carbon dioxide (CO2), from 13 intensive pig production houses located in northern Germany were investigated in 2013 and 2015. NH3 removal efficiencies varied between 35 and 100% with an overall average value of 79% under the NH3 inlet fluctuations from 34 to 755 g d-1 m-3 in both 2013 and 2015. Results of the electron microscopic analyses demonstrated that the bacteria Nitrosomonas sp. and methanotrophs type I were the dominant NH3 and CH4 oxidizers, respectively. However, overall average removal efficiencies of CH4 was approximately zero, which means CH4 is hard to remove in bioscrubbers under normal operation. The pH of recirculation water in the bioscrubber varied from 6.1 to 8.1, and the bioscrubbers with low pH values (<7.0) had high NH3 removal efficiencies (>79%). Electrical conductivity was commonly used to diagnose the bioscrubbers' performance; in the present study, electrical conductivity presented a significant linear relationship with dissolved inorganic nitrogen, which indicates the performance stability of the 13 selected bioscrubbers.

Performance evaluation and optimization of field-scale bioscrubbers for intensive pig house exhaust air treatment in northern Germany.

The treatment of exhaust air from three intensive pig houses in northern Germany by field-scale bioscrubbers (BS.1, BS.2, and BS.3) were evaluated monthly in 2015. The simultaneous removal of NH3 and CH4 was investigated by connecting a second bioscrubber (BS.2-2) to one of the three bioscrubbers (BS.2) to create a two-series connected bioscrubber (BS.2+BS.2-2). Additionally, whether isolated methanotrophic bacterial inoculation in BS.2-2 intensified CH4 removal was examined. Average NH3 removal efficiencies of 86%, 80%, and 77% were observed for BS.1, BS.2, and BS.3, respectively, under fluctuate NH3 inlet concentrations (variation of 22%-54%) throughout the study year. However, average CH4 removal efficiencies were lower than 10% in the three bioscrubbers. The pH of the recirculation water, which ranged from 5.7 to 8.1, was demonstrated to be an important factor for NH3 removal and negatively correlated with NH3 removal and NH4+-N concentration in the recirculation water. The dominant NH3-oxidizing and methanotrophic bacteria in the bioscrubbers, analysed by transmission electron microscopy, were Nitrosomonas sp. and Type I methanotrophs, respectively. NH3 removal efficiency reached 100% in the two-series connected bioscrubber, however, CH4 removal was still low (average of 2%). After inoculating isolated methanotrophic bacteria into BS.2-2, the average CH4 removal was enhanced to 35%, offering a great option for bioscrubbers application to intensify CH4 removal. Therefore, a two-series connected bioscrubber inoculated with methanotrophic bacteria would be an option for simultaneous removal of NH3 and CH4 from the exhaust air of animal houses.

Validation of a simple model to predict the performance of methane oxidation systems, using field data from a large scale biocover test field.

On a large scale test field (1060m(2)) methane emissions were monitored over a period of 30months. During this period, the test field was loaded at rates between 14 and 46gCH4m(-2)d(-1). The total area was subdivided into 60 monitoring grid fields at 17.7m(2) each, which were individually surveyed for methane emissions and methane oxidation efficiency. The latter was calculated both from the direct methane mass balance and from the shift of the carbon dioxide - methane ratio between the base of the methane oxidation layer and the emitted gas. The base flux to each grid field was back-calculated from the data on methane oxidation efficiency and emission. Resolution to grid field scale allowed the analysis of the spatial heterogeneity of all considered fluxes. Higher emissions were measured in the upslope area of the test field. This was attributed to the capillary barrier integrated into the test field resulting in a higher diffusivity and gas permeability in the upslope area. Predictions of the methane oxidation potential were estimated with the simple model Methane Oxidation Tool (MOT) using soil temperature, air filled porosity and water tension as input parameters. It was found that the test field could oxidize 84% of the injected methane. The MOT predictions seemed to be realistic albeit the higher range of the predicted oxidations potentials could not be challenged because the load to the field was too low. Spatial and temporal emission patterns were found indicating heterogeneity of fluxes and efficiencies in the test field. No constant share of direct emissions was found as proposed by the MOT albeit the mean share of emissions throughout the monitoring period was in the range of the expected emissions.

Predicting long-term carbon mineralization and trace gas production from thawing permafrost of Northeast Siberia.

The currently observed Arctic warming will increase permafrost degradation followed by mineralization of formerly frozen organic matter to carbon dioxide (CO2 ) and methane (CH4 ). Despite increasing awareness of permafrost carbon vulnerability, the potential long-term formation of trace gases from thawing permafrost remains unclear. The objective of the current study is to quantify the potential long-term release of trace gases from permafrost organic matter. Therefore, Holocene and Pleistocene permafrost deposits were sampled in the Lena River Delta, Northeast Siberia. The sampled permafrost contained between 0.6% and 12.4% organic carbon. CO2 and CH4 production was measured for 1200 days in aerobic and anaerobic incubations at 4 °C. The derived fluxes were used to estimate parameters of a two pool carbon degradation model. Total CO2 production was similar in Holocene permafrost (1.3 ± 0.8 mg CO2 -C gdw(-1) aerobically, 0.25 ± 0.13 mg CO2 -C gdw(-1) anaerobically) as in 34 000-42 000-year-old Pleistocene permafrost (1.6 ± 1.2 mg CO2 -C gdw(-1) aerobically, 0.26 ± 0.10 mg CO2 -C gdw(-1) anaerobically). The main predictor for carbon mineralization was the content of organic matter. Anaerobic conditions strongly reduced carbon mineralization since only 25% of aerobically mineralized carbon was released as CO2 and CH4 in the absence of oxygen. CH4 production was low or absent in most of the Pleistocene permafrost and always started after a significant delay. After 1200 days on average 3.1% of initial carbon was mineralized to CO2 under aerobic conditions while without oxygen 0.55% were released as CO2 and 0.28% as CH4 . The calibrated carbon degradation model predicted cumulative CO2 production over a period of 100 years accounting for 15.1% (aerobic) and 1.8% (anaerobic) of initial organic carbon, which is significantly less than recent estimates. The multiyear time series from the incubation experiments helps to more reliably constrain projections of future trace gas fluxes from thawing permafrost landscapes.

Spatial variability of soil gas concentration and methane oxidation capacity in landfill covers.

In order to devise design criteria for biocovers intended to enhance the microbial oxidation of landfill methane it is critical to understand the factors influencing gas migration and methane oxidation in landfill cover soils. On an old municipal solid waste landfill in north-western Germany soil gas concentrations (10, 40, 90 cm depth), topsoil methane oxidation capacity and soil properties were surveyed at 40 locations along a 16 m grid. As soil properties determine gas flow patterns it was hypothesized that the variability in soil gas composition and the subsequent methanotrophic activity would correspond to the variability of soil properties. Methanotrophic activity was found to be subject to high spatial variability, with values ranging between 0.17 and 9.80 g CH(4)m(-2)h(-1)(.) Considering the current gas production rate of 0.03 g CH(4)m(-2)h(-1), the oxidation capacity at all sampled locations clearly exceeded the flux to the cover, and can be regarded as an effective instrument for mitigating methane fluxes. The methane concentration in the cover showed a high spatial heterogeneity with values between 0.01 and 0.32 vol.% (10 cm depth), 22.52 vol.% (40 cm), and 36.85 vol.% (90 cm). The exposure to methane raised the oxidation capacity, suggested by a statistical correlation to an increase in methane concentration at 90 cm depth. Methane oxidation capacity was further affected by the methanotroph bacteria pH optimum and nutrient availability, and increased with decreasing pH towards neutrality, and increased with soluble ion concentration). Soil methane and carbon dioxide concentration increased with lower flow resistance of the cover, as represented by the soil properties of a reduced bulk density, increase in air capacity and in relative ground level.

Assessment of the methane oxidation capacity of compacted soils intended for use as landfill cover materials.

The microbial oxidation of methane in engineered cover soils is considered a potent option for the mitigation of emissions from old landfills or sites containing wastes of low methane generation rates. A laboratory column study was conducted in order to derive design criteria that enable construction of an effective methane oxidising cover from the range of soils that are available to the landfill operator. Therefore, the methane oxidation capacity of different soils was assessed under simulated landfill conditions. Five sandy potential landfill top cover materials with varying contents of silt and clay were investigated with respect to methane oxidation and corresponding soil gas composition over a period of four months. The soils were compacted to 95% of their specific proctor density, resulting in bulk densities of 1.4-1.7 g cm(-3), reflecting considerably unfavourable conditions for methane oxidation due to reduced air-filled porosity. The soil water content was adjusted to field capacity, resulting in water contents ranging from 16.2 to 48.5 vol.%. The investigated inlet fluxes ranged from 25 to about 100g CH(4)m(-2)d(-1), covering the methane load proposed to allow for complete oxidation in landfill covers under Western European climate conditions and hence being suggested as a criterion for release from aftercare. The vertical distribution of gas concentrations, methane flux balances as well as stable carbon isotope studies allowed for clear process identifications. Higher inlet fluxes led to a reduction of the aerated zone, an increase in the absolute methane oxidation rate and a decline of the relative proportion of oxidized methane. For each material, a specific maximum oxidation rate was determined, which varied between 20 and 95 g CH(4)m(-2)d(-1) and which was positively correlated to the air-filled porosity of the soil. Methane oxidation efficiencies and gas profile data imply a strong link between oxidation capacity and diffusive ingress of atmospheric air. For one material with elevated levels of fine particles and high organic matter content, methane production impeded the quantification of methane oxidation potentials. Regarding the design of landfill cover layers it was concluded that the magnitude of the expected methane load, the texture and expected compaction of the cover material are key variables that need to be known. Based on these, a column study can serve as an appropriate testing system to determine the methane oxidation capacity of a soil intended as landfill cover material.

Temporal variability of soil gas composition in landfill covers.

In order to assess the temporal variability of the conditions for the microbial oxidation of methane in landfill cover soils and their driving variables, gas composition at non-emissive and strongly emissive locations (hotspots) was monitored on a seasonal, daily and hourly time scale on an old, unlined landfill in northern Germany. Our study showed that the impact of the various environmental factors varied with the mode of gas transport and with the time scale considered. At non-emissive sites, governed by diffusive gas transport, soil gas composition was subject to a pronounced seasonal variation. A high extent of aeration, low methane concentrations and a high ratio of CO(2) to CH(4) were found across the entire depth of the soil cover during the warm and dry period, whereas in the cool and moist period aeration was less and landfill gas migrated further upward. Statistically, variation in soil gas composition was best explained by the variation in soil temperature. At locations dominated by advective gas transport and showing considerable emissions of methane, this pattern was far less pronounced with only little increase in the extent of aeration during drier periods. Here, the change of barometric pressure was found to impact soil gas composition. On a daily scale under constant conditions of temperature, gas transport at both types of locations was strongly impacted by the change in soil moisture. On an hourly scale, under constant conditions of temperature and moisture, gas migration was impacted most by the change in barometric pressure. It was shown that at diffusion-dominated sites complete methane oxidation was achieved even under adverse wintry conditions, whereas at hotspots, even under favorable dry and warm conditions, aerobic biological activity can be limited to the upper crust of the soil.

Cultivation of a novel cold-adapted nitrite oxidizing betaproteobacterium from the Siberian Arctic.

Permafrost-affected soils of the Siberian Arctic were investigated with regard to identification of nitrite oxidizing bacteria active at low temperature. Analysis of the fatty acid profiles of enrichment cultures grown at 4 degrees C, 10 degrees C and 17 degrees C revealed a pattern that was different from that of known nitrite oxidizers but was similar to fatty acid profiles of Betaproteobacteria. Electron microscopy of two enrichment cultures grown at 10 degrees C showed prevalent cells with a conspicuous ultrastructure. Sequence analysis of the 16S rRNA genes allocated the organisms to a so far uncultivated cluster of the Betaproteobacteria, with Gallionella ferruginea as next related taxonomically described organism. The results demonstrate that a novel genus of chemolithoautotrophic nitrite oxidizing bacteria is present in polygonal tundra soils and can be enriched at low temperatures up to 17 degrees C. Cloned sequences with high sequence similarities were previously reported from mesophilic habitats like activated sludge and therefore an involvement of this taxon in nitrite oxidation in nonarctic habitats is suggested. The presented culture will provide an opportunity to correlate nitrification with nonidentified environmental clones in moderate habitats and give insights into mechanisms of cold adaptation. We propose provisional classification of the novel nitrite oxidizing bacterium as 'Candidatus Nitrotoga arctica'.

Characterisation of microbial community composition of a Siberian tundra soil by fluorescence in situ hybridisation.

The bacterial community composition of the active layer (0-45 cm) of a permafrost-affected tundra soil was analysed by fluorescence in situ hybridisation (FISH). Arctic tundra soils contain large amounts of organic carbon, accumulated in thick soil layers and are known as a major sink of atmospheric CO(2). These soils are totally frozen throughout the year and only a thin active layer is unfrozen and shows biological activity during the short summer. To improve the understanding of how the carbon fluxes in the active layer are controlled, detailed analysis of composition, functionality and interaction of soil microorganisms was done. The FISH analyses of the active layer showed large variations in absolute cell numbers and in the composition of the active microbial community between the different horizons, which is caused by the different environmental conditions (e.g., soil temperature, amount of organic matter, aeration) in this vertically structured ecosystem. Universal protein stain 5-(4,6-dichlorotriazin-2-yl)aminofluorescein (DTAF) showed an exponential decrease of total cell counts from the top to the bottom of the active layer (2.3 x 10(9)-1.2 x 10(8) cells per gram dry soil). Using FISH, up to 59% of the DTAF-detected cells could be detected in the surface horizon, and up to 84% of these FISH-detected cells could be affiliated to a known phylogenetic group. The amount of FISH-detectable cells decreased with increasing depth and so did the diversity of ascertained phylogenetic groups.