Coaxial Dielectric Spectroscopy as an In-Line Process Analytical Technique for Reaction Monitoring.

The suitability of broadband dielectric spectroscopy (DS) as a tool for in-line (in situ) reaction monitoring is demonstrated. Using the esterification of 4-nitrophenol as a test-case, we show that multivariate analysis of time-resolved DS data-collected across a wide frequency range with a coaxial dip-probe-allows reaction progress to be measured with both high precision and high accuracy. In addition to the workflows for data collection and analysis, we also establish a convenient method for rapidly assessing the applicability of DS to previously untested reactions or processes. We envisage that, given its orthogonality to other spectroscopic methods, its low cost, and its ease of implementation, DS will be a valuable addition to the process chemist's analytical toolbox.

HO2 + NO2: Kinetics, Thermochemistry, and Evidence for a Bimolecular Product Channel.

A master equation (ME) analysis of available experimental data has been carried out on the reaction HO2 + NO2 + M ⇋ HO2NO2 + M (1a)/(-1a). The analysis, based on the ME code MESMER, uses both the association and dissociation kinetic data from the literature, and provides improved thermochemistry on reaction 1a. Our preferred model assigns two low-frequency vibrations of HO2NO2 as hindered rotors and couples these to the external rotations. This model gives ΔrH°0(1a) = -93.9 ± 1.0 kJ mol-1, which implies that ΔfH°0 HO2NO2 = -42.0 ± 1.0 kJ mol-1 (uncertainties are 2σ). A significant contributor to the uncertainty derives from modeling the interaction between the internal and external rotors. Using this improved kinetics for reaction 1a/-1a, data at elevated temperatures, 353-423 K, which show no evidence of the expected equilibration, have been reanalyzed, indicating that an additional reaction is occurring that masks the equilibration. Based on a published ab initio study, this additional channel is assigned to the bimolecular reaction HO2 + NO2 → H-NO2 + O2 (1b); H-NO2 is nitryl hydride and has not previously been directly observed in experiments. The output of the master equation analysis has been parametrized and Troe expressions are provided for an improved description of k1a(p,T) and k-1a(p,T).

Global Master Equation Analysis of Rate Data for the Reaction C2H4 + H ⇄ C2H5: ΔfH0⊖C2H5.

While forward and reverse rate constants are frequently used to determine enthalpies of reaction and formation, this process is more difficult for pressure-dependent association/dissociation reactions, especially since the forward and reverse reactions are usually studied at very different temperatures. The problems can be overcome by using a data-fitting procedure based on a master equation model. This approach has been applied to existing experimental pressure-dependent forward and reverse rate coefficients for the reaction C2H4 + H ⇄ C2H5 (k1, k-1) using the MESMER code to determine ΔfH0⊖C2H5 from the enthalpy of the reaction. New measurements of k1, k-1 were included in analysis. They are based on laser flash photolysis with direct observation of H atom time profiles by vacuum ultraviolet laser-induced fluorescence under conditions where the approach to equilibrium could be observed. Measurements were made over the temperature range 798-828 K and with [He] from 2.33 to 7.21 × 1018 molecule cm-3. These data were then combined with a wide range of existing experimental data with helium as the bath gas (112 measurements of k1 and k-1, covering the temperature range 285-1094 K, and [He] = 7.1 × 1015-1.9 × 1019 molecule cm-3) and fitted using the master equation solver MESMER. The required vibrational frequencies and rotational constants of the system were obtained from ab initio calculations, and the activation threshold for association (ΔEthresh), enthalpy of reaction (ΔrH0⊖), imaginary frequency (υimag), and helium energy-transfer parameters (⟨ΔE⟩d,298(T/298)n) were optimized. The resulting parameters (errors are 2σ) are ΔEthresh = 11.43 ± 0.34 kJ mol-1, ΔrH0⊖ = -145.34 ± 0.60 kJ mol-1, υimag = 730 ± 130 cm-1, ⟨ΔE⟩d,298 = 54.2 ± 7.6 cm-1, and n = 1.17 ± 0.12. A value of ΔfH298.15⊖(C2H5) = 120.49 ± 0.57 kJ mol-1 is obtained by combining ΔrH0⊖ with standard enthalpies of formation for H and C2H4 and making the appropriate temperature corrections. The dependence of these parameters on how the internal rotor and CH2 inversion modes are treated has been explored. The experimental data for other bath gases have been analyzed, and data sets compatible with the potential energy surface parameters determined above have been identified. The parameters are virtually identical but with slightly smaller error limits. Parameterization of k1, k-1 using the Troe formalization has been used to investigate competition between ethyl decomposition and reaction with oxygen under combustion conditions.

Energy transfer in intermolecular collisions of polycyclic aromatic hydrocarbons with bath gases He and Ar.

Classical trajectory simulations of intermolecular collisions were performed for a series of polycyclic aromatic hydrocarbons interacting with the bath gases helium and argon for bath gas temperature from 300 to 2500 K. The phase-space average energy transferred per deactivating collision, ⟨∆Edown⟩, was obtained. The Buckingham pairwise intermolecular potentials were validated against high-level quantum chemistry calculations and used in the simulations. The reactive force-field was used to describe intramolecular potentials. The dependence of ⟨∆Edown⟩ on initial vibrational energy is discussed. A canonical sampling method was compared with a microcanonical sampling method for selecting initial vibrational energy at high bath gas temperatures. Uncertainties introduced by the initial angular momentum distribution were identified. The dependence of the collisional energy transfer parameters on the type of bath gas and the molecular structure of polycyclic aromatic hydrocarbons was examined.

Stereoretentive Etherification of an α-Aryl-ß-amino Alcohol Using a Selective Aziridinium Ring Opening for the Synthesis of AZD7594.

A selective aziridinium ring-opening was used to etherify an α-aryl-ß-amino alcohol with stereochemical retention. This transformation was achieved in a biphasic system to address phenoxide solubility and the formation of a sulfonate ester impurity. The protecting group strategy was directed by a stability study of the activated α-aryl-ß-amino alcohol in this system. Process analytical techniques were used to establish reaction understanding, and mixing on large scale was modeled in silico. The process provided a selective and efficient method of preparing the nonsteroidal, inhaled selective glucocorticoid receptor modulator AZD7594.

Quantum Cascade Laser Spectral Histopathology: Breast Cancer Diagnostics Using High Throughput Chemical Imaging.

Fourier transform infrared (FT-IR) microscopy coupled with machine learning approaches has been demonstrated to be a powerful technique for identifying abnormalities in human tissue. The ability to objectively identify the prediseased state and diagnose cancer with high levels of accuracy has the potential to revolutionize current histopathological practice. Despite recent technological advances in FT-IR microscopy, sample throughput and speed of acquisition are key barriers to clinical translation. Wide-field quantum cascade laser (QCL) infrared imaging systems with large focal plane array detectors utilizing discrete frequency imaging have demonstrated that large tissue microarrays (TMA) can be imaged in a matter of minutes. However, this ground breaking technology is still in its infancy, and its applicability for routine disease diagnosis is, as yet, unproven. In light of this, we report on a large study utilizing a breast cancer TMA comprised of 207 different patients. We show that by using QCL imaging with continuous spectra acquired between 912 and 1800 cm-1, we can accurately differentiate between 4 different histological classes. We demonstrate that we can discriminate between malignant and nonmalignant stroma spectra with high sensitivity (93.56%) and specificity (85.64%) for an independent test set. Finally, we classify each core in the TMA and achieve high diagnostic accuracy on a patient basis with 100% sensitivity and 86.67% specificity. The absence of false negatives reported here opens up the possibility of utilizing high throughput chemical imaging for cancer screening, thereby reducing pathologist workload and improving patient care.

Obtaining effective rate coefficients to describe the decomposition kinetics of the corannulene oxyradical at high temperatures.

Unimolecular reactions play an important role in combustion kinetics. An important task of reaction kinetic analysis is to obtain the phenomenological rate coefficients for unimolecular reactions based on the master equation approach. In most cases, the eigenvalues of the transition matrix describing collisional internal energy relaxation are of much larger magnitude than and well separated from the chemically significant eigenvalues, so that phenomenological rate coefficients may be unequivocally derived for incorporation in combustion mechanisms. However, when dealing with unimolecular reactions for a large molecule, especially at high temperatures, the large densities of states of the reactant cause the majority of the population distribution to lie at very high energy levels where the microcanonical reaction rate constants are large and the relaxation and chemical eigenvalues overlap, so that well-defined phenomenological rate coefficients cannot be determined. This work attempts to analyze the effect of overlapping eigenvalues on the high-temperature kinetics of a large oxyradical, based on microcanonical reaction rates and population distributions as well as the eigenvalue spectrum of the transition matrix from the master equation. The aim is to provide a pragmatic method for obtaining the most effective rate coefficients for competing elimination, dissociation, and bimolecular reactions for incorporation in combustion mechanisms. Our approach is demonstrated with a representative example, thermal decomposition and H addition reactions of the corannulene oxyradical.

Infrared spectral histopathology using haematoxylin and eosin (H&E) stained glass slides: a major step forward towards clinical translation.

Infrared spectral histopathology has shown great promise as an important diagnostic tool, with the potential to complement current pathological methods. While promising, clinical translation has been hindered by the impracticalities of using infrared transmissive substrates which are both fragile and prohibitively very expensive. Recently, glass has been proposed as a potential replacement which, although largely opaque in the infrared, allows unrestricted access to the high wavenumber region (2500-3800 cm-1). Recent studies using unstained tissue on glass have shown that despite utilising only the amide A band, good discrimination between histological classes could be achieved, and suggest the potential of discriminating between normal and malignant tissue. However unstained tissue on glass has the potential to disrupt the pathologist workflow, since it needs to be stained following infrared chemical imaging. In light of this, we report on the very first infrared Spectral Histopathology SHP study utilising coverslipped H&E stained tissue on glass using samples as received from the pathologist. In this paper we present a rigorous study using results obtained from an extended patient sample set consisting of 182 prostate tissue cores obtained from 100 different patients, on 18 separate H&E slides. Utilising a Random Forest classification model we demonstrate that we can rapidly classify four classes of histology of an independent test set with a high degree of accuracy (>90%). We investigate different degrees of staining using nine separate prostate serial sections, and demonstrate that we discriminate on biomarkers rather than the presence of the stain. Finally, using a four-class model we show that we can discriminate normal epithelium, malignant epithelium, normal stroma and cancer associated stroma with classification accuracies over 95%.

Thermal decomposition of graphene oxyradicals under the influence of an embedded five-membered ring.

In this study, we examined the influence of an embedded five-membered ring on the thermal decomposition of graphene oxyradicals. Their decomposition potential energy surfaces were explored at the B3LYP/6-311g(d,p) level. The temperature and pressure dependence of the rate coefficients was computed by master equation modeling. The results suggest that the embedded five-membered ring leads to a generally slower decomposition rate for CO elimination than that of graphene oxyradicals with only six-membered rings, but the impact of the embedded five-membered ring diminishes when it is two layers away from the edge. Well-behaved first-order kinetics was demonstrated at 1500 K, but collisional relaxation was incomplete on the dissociation timescale at higher temperatures. The ways of determining the effective rate coefficient were discussed and the influence of the uncertainty in rate constants on the predictions of species profiles was also estimated by performing kinetic modeling.

High-throughput quantum cascade laser (QCL) spectral histopathology: a practical approach towards clinical translation.

Infrared microscopy has become one of the key techniques in the biomedical research field for interrogating tissue. In partnership with multivariate analysis and machine learning techniques, it has become widely accepted as a method that can distinguish between normal and cancerous tissue with both high sensitivity and high specificity. While spectral histopathology (SHP) is highly promising for improved clinical diagnosis, several practical barriers currently exist, which need to be addressed before successful implementation in the clinic. Sample throughput and speed of acquisition are key barriers and have been driven by the high volume of samples awaiting histopathological examination. FTIR chemical imaging utilising FPA technology is currently state-of-the-art for infrared chemical imaging, and recent advances in its technology have dramatically reduced acquisition times. Despite this, infrared microscopy measurements on a tissue microarray (TMA), often encompassing several million spectra, takes several hours to acquire. The problem lies with the vast quantities of data that FTIR collects; each pixel in a chemical image is derived from a full infrared spectrum, itself composed of thousands of individual data points. Furthermore, data management is quickly becoming a barrier to clinical translation and poses the question of how to store these incessantly growing data sets. Recently, doubts have been raised as to whether the full spectral range is actually required for accurate disease diagnosis using SHP. These studies suggest that once spectral biomarkers have been predetermined it may be possible to diagnose disease based on a limited number of discrete spectral features. In this current study, we explore the possibility of utilising discrete frequency chemical imaging for acquiring high-throughput, high-resolution chemical images. Utilising a quantum cascade laser imaging microscope with discrete frequency collection at key diagnostic wavelengths, we demonstrate that we can diagnose prostate cancer with high sensitivity and specificity. Finally we extend the study to a large patient dataset utilising tissue microarrays, and show that high sensitivity and specificity can be achieved using high-throughput, rapid data collection, thereby paving the way for practical implementation in the clinic.

Temperature and Pressure Studies of the Reactions of CH3O2, HO2, and 1,2-C4H9O2 with NO2.

A novel technique has been developed for the detection of peroxy radicals in order to study their kinetics with NO2. Peroxy radicals (RO2, where R = H, CH3, and 1,2-C4H9) were produced by laser flash photolysis and were probed by photodissociation of the RO2 and the subsequent detection of either OH or CH3O photofragments by laser-induced fluorescence. Reaction 1 , CH3O2 + NO2 + M ⇌ CH3O2NO2 + M (M = N2), was studied between 25 and 400 Torr at 295 K, giving results in excellent agreement with the literature. At temperatures between 333 and 363 K, equilibration was observed and yielded ΔrH(⊖)298(1) = -93.5 ± 0.3 kJ mol(-1). Reaction 2, HO2 + NO2 + M ⇌ HO2NO2 + M (M = N2), was studied at 295 K and showed kinetics in fair agreement with the literature. Equilibration at higher temperatures was obscured by an additional loss of HO2NO2 from the system. In addition, the OH quantum yield from photolysis of HO2NO2 at 248 nm was determined to be 0.15 ± 0.03. Reaction 3 , 1,2-C4H9O2 + NO2 + M ⇌ 1,2-C4H9O2NO2 + M (M = He), was studied between 241 and 341 K, and at the higher temperatures equilibration was observed, which yielded ΔrH(⊖)298(3) = -93.5 ± 0.6 kJ mol(-1). The low uncertainties in the enthalpies of formation for both CH3O2 and 1,2-C4H9O2 are a result of using a master equation method that allows global analysis of all the available rate data (present measurements and literature values) for forward and reverse reactions under all conditions of temperature and pressure.

Comparison of transmission and transflectance mode FTIR imaging of biological tissue.

FTIR microscopy is a powerful technique which has become popular due to its ability to provide complementary information during histopathological assessment of biomedical tissue samples. Recently however, questions have been raised on the suitability of the transflection mode of operation for clinical diagnosis due to the so called Electric Field Standing Wave (EFSW) effect. In this paper we compare chemical images measured in transmission and transflection from prostate tissue obtained from five different patients, and discuss the variability of the spectra acquired with each sampling modality. We find that spectra obtained in transflection undergo a non-linear distortion, i.e. non-linear variations in absorption band strength across the spectra, and that there are significant differences in spectra measured from the same area of tissue depending on the mode of operation. Principal Component Analysis (PCA) is used to highlight that poorer discrimination between benign and cancerous tissue is obtained in transflection mode. In addition we show that use of second derivatives, while qualitatively improves spectral discrimination, does not completely alleviate the underlying problem.

Reactions of hydrocarbon radicals and biradicals.

Experimental measurements of the rate coefficients for several types of gas phase radical reactions are reviewed. They include radical isomerization and dissociation, radical + radical association, and unimolecular reactions of peroxy radicals. Some reactions of methylene in its lowest singlet state are also considered. The links to theories of chemical reaction rates and especially of capture rates for radical + radical reactions are examined. Many of the reactions involve formation of adducts, which can isomerize and dissociate. Such reactions frequently involve energy distributions of the adducts that are far from Boltzmann, and the interpretation of measurements requires the use of master equation techniques. The basis of these methods and the use of matrix diagonalization and eigenvector/eigenvalue analysis to extract phenomenological rate coefficients are discussed. The relevance of the measurements to applications in atmospheric chemistry and, especially, in combustion is briefly considered.

Pressure and temperature dependent photolysis of glyoxal in the 355-414 nm region: evidence for dissociation from multiple states.

The photolysis of glyoxal has been investigated in the 355-414 nm region by dye laser photolysis coupled with cavity ring-down spectroscopy. Absolute quantum yields of HCO, ΦHCO, were determined using the reaction of chlorine atoms with formaldehyde as an actinometer. The dependence of the quantum yield on pressure was investigated in 3-400 Torr of nitrogen buffer gas and at four temperatures: 233 K, 268 K, 298 K and 323 K. For 355 nm ≤ λ < 395 nm the HCO quantum yield is pressure dependent with linear Stern-Volmer (SV) plots (1/ΦHCO vs. pressure). The zero pressure quantum yield, obtained by extrapolation of the SV plots, rises from 1.6 to 2 between 355 and 382 nm and remains at 2 up to 395 nm. For λ ≥ 395 nm ΦHCO shows a stronger pressure dependence and non-linear SV plots, compatible with formation of HCO by dissociation from two electronic states of glyoxal with significantly different lifetimes. These observations are used to develop a mechanism for the photolysis of glyoxal over the wavelength range studied.

Quantum yields for the photolysis of glyoxal below 350 nm and parameterisations for its photolysis rate in the troposphere.

The formation of HCO and of H in the photolysis of glyoxal have been investigated over the wavelength ranges 310-335 nm for HCO and 193-340 nm for H. Dye laser photolysis was coupled with cavity ring-down spectroscopy for HCO, and with laser induced fluorescence spectroscopy for H. Absolute quantum yields were determined using actinometers based on (a) Cl2 photolysis and the Cl + HCHO reaction for HCO and (b) N2O photolysis (and O(1)D + H2) and CH2CO photolysis (and CH2 + O2) for H. The quantum yields were found to be pressure independent in this wavelength region. Quantum yields for all product channels under atmospheric conditions were calculated and compared with literature values. Differences between this work and previously published work and their atmospheric implications are discussed.

Interception of excited vibrational quantum states by O2 in atmospheric association reactions.

Bimolecular reactions in Earth's atmosphere are generally assumed to proceed between reactants whose internal quantum states are fully thermally relaxed. Here, we highlight a dramatic role for vibrationally excited bimolecular reactants in the oxidation of acetylene. The reaction proceeds by preliminary adduct formation between the alkyne and OH radical, with subsequent O(2) addition. Using a detailed theoretical model, we show that the product-branching ratio is determined by the excited vibrational quantum-state distribution of the adduct at the moment it reacts with O(2). Experimentally, we found that under the simulated atmospheric conditions O(2) intercepts ~25% of the excited adducts before their vibrational quantum states have fully relaxed. Analogous interception of excited-state radicals by O(2) is likely common to a range of atmospheric reactions that proceed through peroxy complexes.