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2.
Chem Sci ; 15(1): 195-203, 2023 Dec 20.
Artículo en Inglés | MEDLINE | ID: mdl-38131086

RESUMEN

The threat of antimicrobial resistance to antibiotics requires a continual effort to develop alternative treatments. Arylglycines (or phenylglycines) are one of the signature amino acids found in many natural peptide antibiotics, but their propensity for epimerization in solid-phase peptide synthesis (SPPS) has prevented their use in long peptide sequences. We have now identified an optimized protocol that allows the synthesis of challenging non-ribosomal peptides including precursors of the glycopeptide antibiotics and an analogue of feglymycin (1 analogue, 20%). We have exploited this protocol to synthesize analogues of the peptide antibiotic ramoplanin using native chemical ligation/desulfurization (1 analogue, 6.5%) and head-to-tail macrocyclization in excellent yield (6 analogues, 3-9%), with these compounds extensively characterized by NMR (U-shaped structure) and antimicrobial activity assays (two clinical isolates). This method significantly reduces synthesis time (6-9 days) when compared with total syntheses (2-3 months) and enables drug discovery programs to include arylglycines in structure-activity relationship studies and drug development.

3.
Bioengineered ; 13(4): 8893-8914, 2022 04.
Artículo en Inglés | MEDLINE | ID: mdl-35333141

RESUMEN

Increasing population, industrialization, and economic growth cause several adverse impacts on the existing environment and living being. Therefore, rising pollutants load and their mitigation strategies, as well as achieving energy requirements while reducing reliance on fossil fuels are the key areas, which needs significant consideration for sustainable environment. Since India has considerable biomass resources, bioenergy is a significant part of the country's energy policy. However, the selection of feedstock is a crucial step in bioenergy production that could produce raw material without compromising food reserve along with the sustainable environment. Higher growth capacity of bamboo species makes them a suitable lignocellulosic substrate for the production of high-value greener products such as fuels, chemicals, and biomaterials as well as an appropriate candidate for eco-restoration of degraded land. In that context, the current review discusses the multidimensional applications of bamboo species in India. The bioenergy potency of bamboo and probability of aligning its production, cultivation, and operation with economic and social development agendas are also addressed, making it an exceptional crop in India. Additionally, its fast growth, perennial root systems, and capability to restore degraded land make it an essential part of ecological restoration. Furthermore, this review explores additional benefits of bamboo plantation on the environment, economy, and society along with future research prospects.


Asunto(s)
Estudios Prospectivos , Biomasa
4.
Dalton Trans ; 50(37): 13002-13011, 2021 Sep 28.
Artículo en Inglés | MEDLINE | ID: mdl-34581361

RESUMEN

Five isostructural 1D porous coordination polymers (PCPs) with a general formula of {[M(L)(DMF)(H2O)]·1.5H2O}n [M = TbIII (1), EuIII (2), YbIII (3), NdIII (4) and ErIII (5)] have been synthesized using a flexible tripodal organic linker (L) and characterized. TbIII (1) and EuIII (2) PCPs exhibit metal-based green and red emission, respectively, whereas YbIII (3), NdIII (4) and ErIII (5) PCPs show near-infrared (NIR) emission. Doping EuIII in 1 in a precisely controlled stoichiometric amount leads to different mixed lanthanide PCPs, {[Tb1-xEux(L)(DMF)(H2O)]·1.5H2O}n (1a-1f) that show tunable emission including that of bright white light. The PCPs decorated with Lewis basic -O- binding sites make them potential candidates for the binding and selective sensing of traces of CuII ions, and this is illustrated for PCP 2 (limit of detection = 0.69 ± 0.02 ppm). The photoluminescence of 2 can be recovered by the introduction of a chelating ligand ethylenediaminetetraacetic acid (EDTA) without any structural disintegration, indicating the potential of the lanthanide PCPs for future sensing applications.

5.
Sci Rep ; 9(1): 10986, 2019 07 29.
Artículo en Inglés | MEDLINE | ID: mdl-31358880

RESUMEN

We have studied differentially regulated nuclear proteome of the clinical tissue specimens of glioblastoma (GBM, WHO Grade IV) and lower grades of gliomas (Grade II and III) using high resolution mass spectrometry- based quantitative proteomics approach. The results showed altered expression of many regulatory proteins from the nucleus such as DNA binding proteins, transcription and post transcriptional processing factors and also included enrichment of nuclear proteins that are targets of granzyme signaling - an immune surveillance pathway. Protein - protein interaction network analysis using integrated proteomics and transcriptomics data of transcription factors and proteins for cell invasion process (drawn from another GBM dataset) revealed YBX1, a ubiquitous RNA and DNA-binding protein and a transcription factor, as a key interactor of major cell invasion-associated proteins from GBM. To verify the regulatory link between them, the co-expression of YBX1 and six of the interacting proteins (EGFR, MAPK1, CD44, SOX2, TNC and MMP13) involved in cell invasion network was examined by immunohistochemistry on tissue micro arrays. Our analysis suggests YBX1 as a potential regulator of these key molecules involved in tumor invasion and thus as a promising target for development of new therapeutic strategies for GBM.


Asunto(s)
Neoplasias Encefálicas/genética , Regulación Neoplásica de la Expresión Génica , Glioblastoma/genética , Invasividad Neoplásica/genética , Proteína 1 de Unión a la Caja Y/genética , Neoplasias Encefálicas/metabolismo , Neoplasias Encefálicas/patología , Redes Reguladoras de Genes , Glioblastoma/metabolismo , Glioblastoma/patología , Humanos , Invasividad Neoplásica/patología , Mapas de Interacción de Proteínas , Activación Transcripcional , Proteína 1 de Unión a la Caja Y/metabolismo
7.
Int Orthod ; 16(4): 684-697, 2018 12.
Artículo en Inglés | MEDLINE | ID: mdl-30385289

RESUMEN

OBJECTIVE: Orthodontic treatment aims at improving the perceived aesthetics; hence knowing which characteristics play a significant role in determining aesthetics is an important orthodontic objective. The aim of this study was to evaluate among laypersons, general dentists and orthodontists the importance of dental versus facial aesthetics. MATERIALS AND METHODS: Frontal face smile photographs of eight volunteers (4 males & 4 females), age group ranging from 16 to 24 years were used for the study. One hundred and fifty evaluators (50 - lay people, 50 general dentists and 50 orthodontists) were asked to select which face they found most attractive - an aesthetically pleasing face with a malocclusion evident in their smile or an average face with an aesthetic smile. A questionnaire method was followed. RESULTS: There was a statistical significant difference in the perception of the faces among the group of the evaluators. Crowding and midline diastema have more of an effect on the perception of attractiveness by laypersons than gumminess or increased buccal corridor space. CONCLUSION: Facial attractiveness is the dominating factor compared to dental aesthetics in cases where the malocclusion is less noticeable.


Asunto(s)
Belleza , Estética Dental , Cara/anatomía & histología , Adolescente , Estética , Femenino , Humanos , Masculino , Maloclusión , Sonrisa , Adulto Joven
8.
OMICS ; 22(6): 437-448, 2018 06.
Artículo en Inglés | MEDLINE | ID: mdl-29927716

RESUMEN

Splice variants are known to be important in the pathophysiology of tumors, including the brain cancers. We applied a proteogenomics pipeline to identify splice variants in glioblastoma (GBM, grade IV glioma), a highly malignant brain tumor, using in-house generated mass spectrometric proteomic data and public domain RNASeq dataset. Our analysis led to the identification of a novel exon that maps to the long isoform of Neural cell adhesion molecule 1 (NCAM1), expressed on the surface of glial cells and neurons, important for cell adhesion and cell signaling. The presence of the novel exon is supported with the identification of five peptides spanning it. Additional peptides were also detected in sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gel separated proteins from GBM patient tissue, underscoring the presence of the novel peptides in the intact brain protein. The novel exon was detected in the RNASeq dataset in 18 of 25 GBM samples and separately validated in additional 10 GBM tumor tissues using quantitative real-time-polymerase chain reaction (qRT-PCR). Both transcriptomic and proteomic data indicate downregulation of NCAM1, including the novel variant, in GBM. Domain analysis of the novel NCAM1 sequence indicates that the insertion of the novel exon contributes extra low-complexity region in the protein that may be important for protein-protein interactions and hence for cell signaling associated with tumor development. Taken together, the novel NCAM1 variant reported in this study exemplifies the importance of future multiomics research and systems biology applications in GBM.


Asunto(s)
Antígeno CD56/metabolismo , Glioblastoma/metabolismo , Moléculas de Adhesión de Célula Nerviosa/metabolismo , Western Blotting , Antígeno CD56/genética , Regulación Neoplásica de la Expresión Génica/genética , Regulación Neoplásica de la Expresión Génica/fisiología , Glioblastoma/genética , Humanos , Espectrometría de Masas , Moléculas de Adhesión de Célula Nerviosa/genética , Unión Proteica , Proteogenómica/métodos
9.
Inorg Chem ; 57(6): 2953-2956, 2018 Mar 19.
Artículo en Inglés | MEDLINE | ID: mdl-29485278

RESUMEN

A highly luminescent tetrameric zinc(II) complex, {[Zn4(adc)3(bpz)6(HCOO)2]·2H2O} (1; adc = 9,10-anthracenedicarboxylate and bpz = bipyridophenazine), was synthesized by a solvothermal technique and characterized by single-crystal X-ray diffraction. The linear tetrameric units extend into three dimensions via π stacking of adc/bpz and bpz/bpz and multiple CH-π interactions. The compound shows strong red emission at 597 nm (λex = 480 nm), which is attributed to charge-transfer (CT) emission within an adc/bpz donor-acceptor pair. This is also supported by density functional theory computations. Interestingly, the CT emission is amplified by energy transfer from another adc linker that is not involved in the CT interaction.

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