Increasing global oceanic wind speed partly counteracted water clarity management effectiveness: A case study of Hainan Island coastal waters.

A sustainable coastal "blue economy" is one of the most significant opportunities and challenges in the new era. However, the management and conservation of marine ecosystems must recognize the interdependence in the coupled human and natural systems. In this study, we employed satellite remote sensing to map the spatial and temporal distribution of Secchi disk depth (SDD) in Hainan coastal waters, China for the first time, and quantitatively revealed the impacts of environmental investments on the coastal water environment in the context of global climate change. Based on the moderate resolution imaging spectroradiometer (MODIS) in situ concurrent matchups (N = 123), a simple green band (555 nm)-based quadratic algorithm was first developed to estimate the SDD for the coastal waters of Hainan Island in China (R2 = 0.70, root mean square error (RMSE) = 1.74 m). The long time-series SDD dataset (2001-2021) for Hainan coastal waters was reconstructed from MODIS observations. Spatially, SDD showed a pattern of high water clarity in eastern and southern coastal waters and low water clarity in the western and northern coastal areas. This pattern is attributed to unbalanced distributions of bathymetry and pollution from seagoing rivers. Seasonally, the humid tropical monsoon climate drove the SDD into a general pattern of high in the wet season and low in the dry season. Annually, the SDD in Hainan coastal waters improved significantly (p < 0.1), benefiting from environmental investments over the last 20 years. However, the increasing global oceanic wind speed in recent years has exacerbated sediment resuspension and deep ocean mixing, counteracting approximately 14.14% of the remedial management's effectiveness in protecting and restoring the coastal ecosystem. This study offers ways to improve the ecological and environmental regulations under global changes and to strengthen the public service capacity for aquatic management authorities with methods that support the sustainable development of coastal areas.

Coastal corals during heat stress and eutrophication: A case study in Northwest Hainan coastal areas.

This study initially investigated the coral status during the unexpected bleaching event in three coastal areas in Northwest Hainan coastal areas and analyzed changes in coral holobionts of the healthy and bleached Galaxea fascicularis. Coral coverage had declined severely, and the bleaching rate was extremely high during heat stress. The bleached corals had lower maximum photosynthetic yield, actual photosynthetic yield, zooxanthellae density, and chlorophyll a content than the healthy G. fascicularis, but there was no significant difference in protein, carbohydrate and lipid in eutrophic waters. The diversity and community composition of Symbiodiniaceae and symbiotic bacteria between healthy and bleached G. fascicularis showed no difference. Function prediction of the symbiotic bacteria revealed that the metabolism process was the main pathway of annotation. Present findings suggested that energy reserve functioning and high stability of the holobiont structure and might provide opportunities to G. fascicularis to adapt to eutrophication and heat stress.

BERT-m7G: A Transformer Architecture Based on BERT and Stacking Ensemble to Identify RNA N7-Methylguanosine Sites from Sequence Information.

As one of the most prevalent posttranscriptional modifications of RNA, N7-methylguanosine (m7G) plays an essential role in the regulation of gene expression. Accurate identification of m7G sites in the transcriptome is invaluable for better revealing their potential functional mechanisms. Although high-throughput experimental methods can locate m7G sites precisely, they are overpriced and time-consuming. Hence, it is imperative to design an efficient computational method that can accurately identify the m7G sites. In this study, we propose a novel method via incorporating BERT-based multilingual model in bioinformatics to represent the information of RNA sequences. Firstly, we treat RNA sequences as natural sentences and then employ bidirectional encoder representations from transformers (BERT) model to transform them into fixed-length numerical matrices. Secondly, a feature selection scheme based on the elastic net method is constructed to eliminate redundant features and retain important features. Finally, the selected feature subset is input into a stacking ensemble classifier to predict m7G sites, and the hyperparameters of the classifier are tuned with tree-structured Parzen estimator (TPE) approach. By 10-fold cross-validation, the performance of BERT-m7G is measured with an ACC of 95.48% and an MCC of 0.9100. The experimental results indicate that the proposed method significantly outperforms state-of-the-art prediction methods in the identification of m7G modifications.

Physiological Characteristics and Environment Adaptability of Reef-Building Corals at the Wuzhizhou Island of South China Sea.

The health of coral reef has declined significantly around the world due to the impact of human activities and natural environment changes, and corals have to develop effective resistance mechanisms to survive. In this study, we examined the physiological characteristics and Symbiodiniaceae types of four dominant scleractinian corals in the reefs at the Wuzhizhou Island (WZZ) in South China Sea. The water environmental conditions are complex on the north side of WZZ due to regional geography and tourism development, and all corals had their unique physiological conditions and Symbiodiniaceae types. For all corals of this study, the rETRm ax and protein content were significantly lower and the SOD enzyme activity was significantly higher in the north than in the south. Interestingly, ITS2 genotyping showed that Galaxea fascicularis contained dominant Symbiodiniaceae either genotype C21 or D1a depending on the regional environmental stress, and had stronger heterotrophy than the other three coral species. In addition, the light use efficiency of the dominant Symbiodiniaceae type C1 for Pocillopora verrucosa was significantly lower in the north and the half saturating irradiance was stable. Besides, Montipora truncata and P. verrucosa increased their density of the symbiotic zooxanthella C1 in the north to offset the decline of photosynthetic efficiency and thus supply energy. For Porites lutea and G. fascicularis, their half saturating irradiance declined sharply in the north, where P. lutea resorted to heterotrophic feeding to balance the energy budget when the number of zooxanthellas fell short and G. fascicularis reduced its energy reserve significantly when the energy source was limited. We thus demonstrated the differences in the physiological responses and energy metabolism strategies between the zooxanthella and the host coral of the four reef-building coral species under the stress of complex water environment on the north side of WZZ. The corals were found to cope with natural and anthropogenic stressors by adjusting the nutrient input sources and the energy structure metabolism of coral hosts or adapting to more sustainable relationship with Symbiodiniaceae clades. The corals exhibited their capacity against long-term disturbances by developing their own successful resistance mechanisms at symbiotic relationship and energy metabolism level.