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1.
NPJ Genom Med ; 6(1): 21, 2021 Mar 04.
Artículo en Inglés | MEDLINE | ID: mdl-33664273

RESUMEN

Here we report an infant with clinical findings suggestive of Jervell and Lange-Nielsen syndrome (JLNS), including a prolonged QT interval (LQTS) and chronic bilateral sensorineural deafness. NGS analysis revealed one known heterozygous pathogenic missense variant, KCNQ1 p.R259L, previously associated with LQTS but insufficient to explain the cardioauditory disorder. In a screening of proximal intronic regions, we found a heterozygous variant, KCNQ1 c.1686-9 T > C, absent from controls and previously undescribed. Several splicing prediction tools returned low scores for this intronic variant. Driven by the proband's phenotype rather than the neutral predictions, we have characterized this rare intronic variant. Family analysis has shown that the proband inherited the missense and the intronic variants from his mother and father, respectively. A minigene splicing assay revealed that the intronic variant induced an additional transcript, arising from skipping of exon 14, which was translated into a truncated protein in transfected cells. The splice-out of exon 14 creates a frameshift in exon 15 and a stop codon in exon 16, which is the last exon of KCNQ1. This mis-spliced transcript is expected to escape nonsense-mediated decay and predicted to encode a truncated loss-of-function protein, KCNQ1 p.L563Kfs*73. The analysis of endogenous KCNQ1 expression in the blood of the proband's parents detected the aberrant transcript only in the patient's father. Taken together, these analyses confirmed the proband's diagnosis of JLNS1 and indicated that c.1686-9 T > C is a cryptic splice-altering variant, expanding the known genetic spectrum of biallelic KCNQ1 variant combinations leading to JLNS1.

2.
PLoS Pathog ; 14(1): e1006797, 2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-29385212

RESUMEN

Very solid evidence suggests that the core of full length PrPSc is a 4-rung ß-solenoid, and that individual PrPSc subunits stack to form amyloid fibers. We recently used limited proteolysis to map the ß-strands and connecting loops that make up the PrPSc solenoid. Using high resolution SDS-PAGE followed by epitope analysis, and mass spectrometry, we identified positions ~116/118, 133-134, 141, 152-153, 162, 169 and 179 (murine numbering) as Proteinase K (PK) cleavage sites in PrPSc. Such sites likely define loops and/or borders of ß-strands, helping us to predict the threading of the ß-solenoid. We have now extended this approach to recombinant PrPSc (recPrPSc). The term recPrPSc refers to bona fide recombinant prions prepared by PMCA, exhibiting infectivity with attack rates of ~100%. Limited proteolysis of mouse and bank vole recPrPSc species yielded N-terminally truncated PK-resistant fragments similar to those seen in brain-derived PrPSc, albeit with varying relative yields. Along with these fragments, doubly N- and C-terminally truncated fragments, in particular ~89/97-152, were detected in some recPrPSc preparations; similar fragments are characteristic of atypical strains of brain-derived PrPSc. Our results suggest a shared architecture of recPrPSc and brain PrPSc prions. The observed differences, in particular the distinct yields of specific PK-resistant fragments, are likely due to differences in threading which result in the specific biochemical characteristics of recPrPSc. Furthermore, recombinant PrPSc offers exciting opportunities for structural studies unachievable with brain-derived PrPSc.


Asunto(s)
Encéfalo/metabolismo , Proteínas PrPSc/química , Priones/química , Proteolisis , Proteínas Recombinantes/química , Animales , Arvicolinae , Femenino , Ratones , Ratones Transgénicos , Proteínas PrPSc/metabolismo , Priones/metabolismo , Estructura Secundaria de Proteína
3.
Int J Mol Sci ; 20(1)2018 12 29.
Artículo en Inglés | MEDLINE | ID: mdl-30597994

RESUMEN

A balanced chromosomal translocation disrupting DISC1 (Disrupted in Schizophrenia 1) gene has been linked to psychiatric diseases, such as major depression, bipolar disorder and schizophrenia. Since the discovery of this translocation, many studies have focused on understating the role of the truncated isoform of DISC1, hypothesizing that the gain of function of this protein could be behind the neurobiology of mental conditions, but not so many studies have focused in the mechanisms impaired due to its loss of function. For that reason, we performed an analysis on the cellular proteome of primary neurons in which DISC1 was knocked down with the goal of identifying relevant pathways directly affected by DISC1 loss of function. Using an unbiased proteomic approach, we found that the expression of 31 proteins related to neurodevelopment (e.g., CRMP-2, stathmin) and synaptic function (e.g., MUNC-18, NCS-1) is altered by DISC1 in primary mouse neurons. Hence, this study reinforces the idea that DISC1 is a unifying regulator of both neurodevelopment and synaptic function, thereby providing a link between these two key anatomical and cellular circuitries.


Asunto(s)
Proteínas del Tejido Nervioso/genética , Neurogénesis , Transmisión Sináptica , Animales , Línea Celular Tumoral , Células Cultivadas , Humanos , Ratones , Proteínas del Tejido Nervioso/metabolismo , Neuronas/metabolismo , Proteoma/genética , Proteoma/metabolismo
4.
PLoS One ; 12(9): e0185176, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28934328

RESUMEN

VGF (non-acronymic)is a secreted chromogranin/secretogranin that gives rise to a number of bioactive peptides by a complex proteolysis mechanism. VGF-derived peptides exert an extensive array of biological effects in energy metabolism, mood regulation, pain, gastric secretion function, reproduction and, perhaps, cancer. It is therefore surprising that very little is known about receptors and binding partners of VGF-derived peptides and their downstream molecular mechanisms of action. Here, using affinity chromatography and mass spectrometry-based protein identification, we have identified the heat shock cognate 71 kDa protein A8 (HSPA8)as a binding partner of human TLQP-21 on the surface of human neuroblastomaSH-SY5Y cells. Binding of TLQP-21 to membrane associated HSPA8 in live SH-SY5Y cells was further supported by cross-linking to live cells. Interaction between HSPA8 and TLQP-21 was confirmed in vitro by label-free Dynamic Mass Redistribution (DMR) studies. Furthermore, molecular modeling studies show that TLQP-21 can be docked into the HSPA8 peptide binding pocket. Identification of HSPA8 as a cell surface binding partner of TLQP-21 opens new avenues to explore the molecular mechanisms of its physiological actions, and of pharmacological modulation thereof.


Asunto(s)
Proteínas del Choque Térmico HSC70/metabolismo , Neuropéptidos/química , Fragmentos de Péptidos/metabolismo , Biotinilación , Línea Celular Tumoral , Membrana Celular/efectos de los fármacos , Membrana Celular/metabolismo , Proteínas del Choque Térmico HSC70/química , Humanos , Simulación del Acoplamiento Molecular , Fragmentos de Péptidos/química , Unión Proteica , Conformación Proteica , Propiedades de Superficie
5.
Sci Rep ; 6: 39603, 2016 12 22.
Artículo en Inglés | MEDLINE | ID: mdl-28004756

RESUMEN

The platelet-specific collagen receptor glycoprotein VI (GPVI) is critical for the formation of arterial thrombosis in vivo. We analyzed GPVI-activated platelets from ST-elevation myocardial infarction (STEMI) patients and matched stable coronary artery disease (SCAD) controls in order to provide novel clues on the degree of involvement of GPVI signaling in the acute event. Firstly, platelets were isolated from systemic venous blood and activated with the GPVI specific agonist CRP (collagen-related peptide). STEMI and SCAD samples were compared by a phosphoproteomics approach. Validations were by immunoblotting in systemic and intracoronary blood from independent cohorts of patients. Twenty-six differentially regulated proteins were identified when comparing CRP-activated systemic platelets from STEMI and SCAD patients, 4 of which were selected for validation studies: PLCÉ£2, G6f, SLP-76, and Dok-2. Immunoblot analyses showed these four proteins had higher tyrosine phosphorylation levels in response to CRP in platelets from STEMI patients, being these levels more pronounced at the culprit site of coronary artery occlusion. Moreover, platelet aggregation studies showed a higher response to GPVI agonists in STEMI patients compared to SCAD controls. In conclusion, we show an altered activation state of GPVI signaling in STEMI patients, confirming this receptor as a promising anti-thrombotic target for myocardial infarction.


Asunto(s)
Plaquetas/metabolismo , Activación Plaquetaria , Agregación Plaquetaria , Glicoproteínas de Membrana Plaquetaria/metabolismo , Infarto del Miocardio con Elevación del ST/metabolismo , Transducción de Señal , Anciano , Estudios de Cohortes , Colágeno/química , Enfermedad de la Arteria Coronaria/metabolismo , Femenino , Humanos , Masculino , Persona de Mediana Edad , Fosforilación , Proteómica , Trombosis/metabolismo
6.
PLoS Pathog ; 12(9): e1005835, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-27606840

RESUMEN

The structure of the infectious prion protein (PrPSc), which is responsible for Creutzfeldt-Jakob disease in humans and bovine spongiform encephalopathy, has escaped all attempts at elucidation due to its insolubility and propensity to aggregate. PrPSc replicates by converting the non-infectious, cellular prion protein (PrPC) into the misfolded, infectious conformer through an unknown mechanism. PrPSc and its N-terminally truncated variant, PrP 27-30, aggregate into amorphous aggregates, 2D crystals, and amyloid fibrils. The structure of these infectious conformers is essential to understanding prion replication and the development of structure-based therapeutic interventions. Here we used the repetitive organization inherent to GPI-anchorless PrP 27-30 amyloid fibrils to analyze their structure via electron cryomicroscopy. Fourier-transform analyses of averaged fibril segments indicate a repeating unit of 19.1 Å. 3D reconstructions of these fibrils revealed two distinct protofilaments, and, together with a molecular volume of 18,990 Å3, predicted the height of each PrP 27-30 molecule as ~17.7 Å. Together, the data indicate a four-rung ß-solenoid structure as a key feature for the architecture of infectious mammalian prions. Furthermore, they allow to formulate a molecular mechanism for the replication of prions. Knowledge of the prion structure will provide important insights into the self-propagation mechanisms of protein misfolding.


Asunto(s)
Amiloide/ultraestructura , Proteínas PrPC/ultraestructura , Proteínas PrPSc/ultraestructura , Amiloide/genética , Animales , Bovinos , Síndrome de Creutzfeldt-Jakob/genética , Síndrome de Creutzfeldt-Jakob/metabolismo , Síndrome de Creutzfeldt-Jakob/patología , Microscopía por Crioelectrón , Encefalopatía Espongiforme Bovina/genética , Encefalopatía Espongiforme Bovina/metabolismo , Encefalopatía Espongiforme Bovina/patología , Humanos , Proteínas PrPC/genética , Proteínas PrPSc/genética
7.
J Proteomics ; 148: 75-84, 2016 10 04.
Artículo en Inglés | MEDLINE | ID: mdl-27457270

RESUMEN

UNLABELLED: Dilated cardiomyopathy (DCM) is a severe heart disease characterized by progressive ventricular dilation and impaired systolic function of the left ventricle. We recently identified a novel pathogenic mutation in the LMNA gene in a family affected by DCM showing sudden death background. We now aimed to identify potential biomarkers of disease status, as well as sudden death predictors, in members of this family. We analysed plasma samples from 14 family members carrying the mutation, four of which (with relevant clinical symptoms) were chosen for the proteomic analysis. Plasma samples from these four patients and from four sex- and age-matched healthy controls were processed for their enrichment in low- and medium-abundance proteins (ProteoMiner™) prior to proteomic analysis by 2D-DIGE and MS. 111 spots were found to be differentially regulated between mutation carriers and control groups, 83 of which were successfully identified by MS, corresponding to 41 different ORFs. Some proteins of interest were validated either by turbidimetry or western blot in family members and healthy controls. Actin, alpha-1-antytripsin, clusterin, vitamin-D binding protein and antithrombin-III showed increased levels in plasma from the diseased group. We suggest following these proteins as putative biomarkers for the evaluation of DCM status in LMNA mutation carriers. BIOLOGICAL SIGNIFICANCE: We developed a proteomic analysis of plasma samples from a family showing history of dilated cardiomyopathy caused by a LMNA mutation, which may lead to premature death or cardiac transplant. We identified a number of proteins augmented in mutation carriers that could be followed as potential biomarkers for dilated cardiomyopathy on these patients.


Asunto(s)
Cardiomiopatía Dilatada/diagnóstico , Muerte Súbita Cardíaca/etiología , Lamina Tipo A/genética , Mutación , Adolescente , Adulto , Biomarcadores/sangre , Cardiomiopatía Dilatada/complicaciones , Cardiomiopatía Dilatada/genética , Estudios de Casos y Controles , Niño , Preescolar , Muerte Súbita Cardíaca/prevención & control , Salud de la Familia , Femenino , Humanos , Lactante , Masculino , Espectrometría de Masas , Persona de Mediana Edad , Linaje , Proteómica/métodos , Electroforesis Bidimensional Diferencial en Gel , Adulto Joven
8.
Proteomics Clin Appl ; 10(8): 851-8, 2016 08.
Artículo en Inglés | MEDLINE | ID: mdl-27095521

RESUMEN

PURPOSE: Platelets play a fundamental role in the atherothrombotic events that lead to an acute myocardial infarction. In the present study we compared the proteome of intracoronary and peripheral arterial platelets from ST-elevation myocardial infarction (STEMI) patients in the search for potential platelet biomarkers/drug targets related to what is happening at the culprit site. EXPERIMENTAL DESIGN: Ten STEMI patients were recruited and blood collected from the occluded coronary artery, at the culprit site, in the moment of reperfusion. Systemic blood obtained from the radial artery of the same patients was used as control. Proteome analysis was based on high-resolution 2D-DIGE and mass spectrometry. Validations were by western blotting in a group of 11 patients. RESULTS: Sixteen differentially regulated protein features were identified, corresponding to 15 ORFs, mostly related to cytoskeletal and signaling proteins. We demonstrate the up-regulation of integrin αIIb (ITA2B), the adapter Src kinase-associated phosphoprotein-2 (SKAP2), and thrombospondin-1 isoforms in intracoronary platelets. CONCLUSION AND CLINICAL RELEVANCE: This study constitutes the first analyzing in detail the proteome of arterial intracoronary platelets from STEMI patients. We show variations in the platelet proteome when comparing intracoronary and peripheral platelets. Observed differences might be related to platelet activation events at the culprit site.


Asunto(s)
Plaquetas/metabolismo , Vasos Coronarios/patología , Infarto del Miocardio/sangre , Activación Plaquetaria , Proteómica/métodos , Electroforesis Bidimensional Diferencial en Gel , Regulación hacia Arriba , Enfermedad Aguda , Anciano , Artefactos , Plaquetas/fisiología , Femenino , Humanos , Péptidos y Proteínas de Señalización Intracelular/metabolismo , Masculino , Infarto del Miocardio/metabolismo , Infarto del Miocardio/fisiopatología , Glicoproteína IIb de Membrana Plaquetaria/metabolismo , Talina/metabolismo , Trombospondina 1/metabolismo
9.
Neurobiol Dis ; 83: 44-53, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26282322

RESUMEN

Celia's Encephalopathy (MIM #615924) is a recently discovered fatal neurodegenerative syndrome associated with a new BSCL2 mutation (c.985C>T) that results in an aberrant isoform of seipin (Celia seipin). This mutation is lethal in both homozygosity and compounded heterozygosity with a lipodystrophic BSCL2 mutation, resulting in a progressive encephalopathy with fatal outcomes at ages 6-8. Strikingly, heterozygous carriers are asymptomatic, conflicting with the gain of toxic function attributed to this mutation. Here we report new key insights about the molecular pathogenic mechanism of this new syndrome. Intranuclear inclusions containing mutant seipin were found in brain tissue from a homozygous patient suggesting a pathogenic mechanism similar to other neurodegenerative diseases featuring brain accumulation of aggregated, misfolded proteins. Sucrose gradient distribution showed that mutant seipin forms much larger aggregates as compared with wild type (wt) seipin, indicating an impaired oligomerization. On the other hand, the interaction between wt and Celia seipin confirmed by coimmunoprecipitation (CoIP) assays, together with the identification of mixed oligomers in sucrose gradient fractionation experiments can explain the lack of symptoms in heterozygous carriers. We propose that the increased aggregation and subsequent impaired oligomerization of Celia seipin leads to cell death. In heterozygous carriers, wt seipin might prevent the damage caused by mutant seipin through its sequestration into harmless mixed oligomers.


Asunto(s)
Encefalopatías/genética , Encefalopatías/metabolismo , Encéfalo/metabolismo , Subunidades gamma de la Proteína de Unión al GTP/genética , Mutación , Deficiencias en la Proteostasis/genética , Deficiencias en la Proteostasis/metabolismo , Adipocitos/metabolismo , Adulto , Anciano , Encéfalo/patología , Encefalopatías/patología , Niño , Retículo Endoplásmico/metabolismo , Femenino , Heterocigoto , Humanos , Masculino , Agregado de Proteínas , Proteómica , Deficiencias en la Proteostasis/patología
10.
Sci Rep ; 5: 8198, 2015 Feb 03.
Artículo en Inglés | MEDLINE | ID: mdl-25645904

RESUMEN

Upon stimulation, platelets release a high number of proteins (the releasate). There are clear indications that these proteins are involved in the pathogenesis of several diseases, such as atherosclerosis. In the present study we compared the platelet releasate following platelet activation with two major endogenous agonists: thrombin and collagen. Proteome analysis was based on 2D-DIGE and LC-MS/MS. Firstly, we showed the primary role of thrombin and collagen receptors in platelet secretion by these agonists; moreover, we demonstrated that GPVI is the primary responsible for collagen-induced platelet activation/aggregation. Proteomic analysis allowed the detection of 122 protein spots differentially regulated between both conditions. After excluding fibrinogen spots, down-regulated in the releasate of thrombin-activated platelets, 84 differences remained. From those, we successfully identified 42, corresponding to 37 open-reading frames. Many of the differences identified correspond to post-translational modifications, primarily, proteolysis induced by thrombin. Among others, we show vitamin K-dependent protein S, an anticoagulant plasma protein, is up-regulated in thrombin samples. Our results could have pathological implications given that platelets might be playing a differential role in various diseases and biological processes through the secretion of different subsets of granule proteins and microvesicles following a predominant activation of certain receptors.


Asunto(s)
Plaquetas/efectos de los fármacos , Colágeno/farmacología , Proteoma/análisis , Trombina/farmacología , Electroforesis Bidimensional Diferencial en Gel , Anticuerpos/inmunología , Anticuerpos/farmacología , Plaquetas/metabolismo , Cromatografía Líquida de Alta Presión , Humanos , Agregación Plaquetaria/efectos de los fármacos , Proteína S/metabolismo , Proteómica , Pirroles/farmacología , Quinazolinas/farmacología , Espectrometría de Masas en Tándem , Regulación hacia Arriba/efectos de los fármacos
11.
Thromb Haemost ; 112(4): 716-26, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25007837

RESUMEN

Membrane microvesicles (MVs) are released from activated cells, most notably platelets, into the circulation. They represent an important mode of intercellular communication, and their number is increased in patients with acute coronary syndromes. We present here a differential proteomic analysis of plasma MVs from ST-elevation myocardial infarction (STEMI) patients and stable coronary artery disease (SCAD) controls. The objective was the identification of MVs biomarkers/drug targets that could be relevant for the pathogenesis of the acute event. Proteome analysis was based on 2D-DIGE, and mass spectrometry. Validations were by western blotting in an independent cohort of patients and healthy individuals. A systems biology approach was used to predict protein-protein interactions and their relation with disease. Following gel image analysis, we detected 117 protein features that varied between STEMI and SCAD groups (fold change cut-off ≥2; p<0.01). From those, 102 were successfully identified, corresponding to 25 open-reading frames (ORFs). Most of the proteins identified are involved in inflammatory response and cardiovascular disease, with 11 ORFs related to infarction. Among others, we report an up-regulation of α2-macroglobulin isoforms, fibrinogen, and viperin in MVs from STEMI patients. Interestingly, several of the proteins identified are involved in thrombogenesis (e.g. α2-macroglobulin, and fibrinogen). In conclusion, we provide a unique panel of proteins that vary between plasma MVs from STEMI and SCAD patients and that might constitute a promising source of biomarkers/drug targets for myocardial infarction.


Asunto(s)
Infarto del Miocardio/sangre , Síndrome Coronario Agudo/sangre , Adulto , Anciano , Anciano de 80 o más Años , Biomarcadores/sangre , Enfermedad de la Arteria Coronaria/sangre , Electroforesis en Gel Bidimensional , Femenino , Fibrinógeno/química , Humanos , Procesamiento de Imagen Asistido por Computador , Masculino , Espectrometría de Masas , Persona de Mediana Edad , Sistemas de Lectura Abierta , Oxidorreductasas actuantes sobre Donantes de Grupo CH-CH , Mapeo de Interacción de Proteínas , Proteínas/química , Proteoma , Proteómica/métodos , Biología de Sistemas , alfa-Macroglobulinas/química
12.
Hum Mol Genet ; 23(22): 5859-65, 2014 Nov 15.
Artículo en Inglés | MEDLINE | ID: mdl-24934694

RESUMEN

In a large Scottish pedigree, disruption of the gene coding for DISC1 clearly segregates with major depression, schizophrenia and related mental conditions. Thus, study of DISC1 may provide a clue to understand the biology of major mental illness. A neuropeptide precursor VGF has potent antidepressant effects and has been reportedly associated with bipolar disorder. Here we show that DISC1 knockdown leads to a reduction of VGF, in neurons. VGF is also downregulated in the cortices from sporadic cases with major mental disease. A positive correlation of VGF single-nucleotide polymorphisms (SNPs) with social anhedonia was also observed. We now propose that VGF participates in a common pathophysiology of major mental disease.


Asunto(s)
Encéfalo/metabolismo , Regulación hacia Abajo , Trastornos Mentales/genética , Factores de Crecimiento Nervioso/genética , Proteínas del Tejido Nervioso/metabolismo , Anhedonia , Estudios de Cohortes , Humanos , Trastornos Mentales/metabolismo , Trastornos Mentales/psicología , Factores de Crecimiento Nervioso/metabolismo , Proteínas del Tejido Nervioso/genética , Neuronas/metabolismo , Linaje , Polimorfismo de Nucleótido Simple
13.
Blood ; 120(26): e117-26, 2012 Dec 20.
Artículo en Inglés | MEDLINE | ID: mdl-23053573

RESUMEN

C-type lectin-like receptor 2 (CLEC-2) is an essential platelet-activating receptor in hemostasis and thrombosis that is activated by the snake venom rhodocytin. We present here a differential proteomic analysis of basal and rhodocytin-activated platelets with the aim of providing novel clues on CLEC-2 signaling regulation. Proteome analysis was based on 2D-DIGE, phosphotyrosine immunoprecipitations followed by 1D SDS-PAGE and mass spectrometry. Protein-protein interactions were studied by coimmunoprecipitations and a systems biology approach. Overall, we identified 132 proteins differentially regulated after CLEC-2 platelet activation, including most of the major players reported so far in the signaling cascade. In addition, we identified various proteins not previously known to participate in CLEC-2 signaling, such as the adapters Dok-2 and ADAP, tyrosine kinase Fer, and tyrosine phosphatase SHIP-1. We also report an increased association between Dok-2 and SHIP-1 in rhodocytin-stimulated platelets, which might negatively regulate CLEC-2 signaling. Moreover, we also present a comparative analysis of proteomic data for CLEC-2 and glycoprotein VI signaling. We think that our data provide thrombosis-relevant information on CLEC-2 signaling regulation, contributing to a better understanding of this important signaling cascade.


Asunto(s)
Péptidos y Proteínas de Señalización Intracelular/metabolismo , Lectinas Tipo C/metabolismo , Lectinas Tipo C/fisiología , Glicoproteínas de Membrana/metabolismo , Glicoproteínas de Membrana/fisiología , Activación Plaquetaria/efectos de los fármacos , Proteoma/análisis , Venenos de Víboras/farmacología , Plaquetas/química , Plaquetas/efectos de los fármacos , Plaquetas/metabolismo , Proteínas Sanguíneas/análisis , Humanos , Péptidos y Proteínas de Señalización Intracelular/sangre , Fosfoproteínas/análisis , Fosfoproteínas/sangre , Fosfoproteínas/metabolismo , Unión Proteica/efectos de los fármacos , Proteoma/efectos de los fármacos , Proteómica/métodos , Transducción de Señal/efectos de los fármacos , Electroforesis Bidimensional Diferencial en Gel , Tirosina/metabolismo , Estudios de Validación como Asunto
14.
Hum Mol Genet ; 21(20): 4406-18, 2012 Oct 15.
Artículo en Inglés | MEDLINE | ID: mdl-22798627

RESUMEN

Schizophrenia is a chronic illness of heterogenous biological origin. We hypothesized that, similar to chronic progressive brain conditions, persistent functional disturbances of neurons would result in disturbed proteostasis in the brains of schizophrenia patients, leading to increased abundance of specific misfolded, insoluble proteins. Identification of such proteins would facilitate the elucidation of molecular processes underlying these devastating conditions. We therefore generated antibodies against pooled insoluble proteome of post-mortem brains from schizophrenia patients in order to identify unique, disease-specific epitopes. We successfully identified such an epitope to be present on collapsin-response mediator protein 1 (CRMP1) in biochemically purified, insoluble brain fractions. A genetic association analysis for the CRMP1 gene in a large Finnish population cohort (n = 4651) corroborated the association of physical and social anhedonia with the CRMP1 locus in a DISC1 (Disrupted-in-schizophrenia 1)-dependent manner. Physical and social anhedonia are heritable traits, present as chronic, negative symptoms of schizophrenia and severe major depression, thus constituting serious vulnerability factors for mental disease. Strikingly, lymphoblastoid cell lines derived from schizophrenia patients mirrored aberrant CRMP1 immunoreactivity by showing an increase of CRMP1 expression, suggesting its potential role as a blood-based diagnostic marker. CRMP1 is a novel candidate protein for schizophrenia traits at the intersection of the reelin and DISC1 pathways that directly and functionally interacts with DISC1. We demonstrate the impact of an interdisciplinary approach where the identification of a disease-associated epitope in post-mortem brains, powered by a genetic association study, is rapidly translated into a potential blood-based diagnostic marker.


Asunto(s)
Proteínas del Tejido Nervioso/genética , Proteínas del Tejido Nervioso/metabolismo , Proteoma/metabolismo , Adulto , Animales , Encéfalo/metabolismo , Línea Celular Tumoral , Estudios de Cohortes , Predisposición Genética a la Enfermedad , Genómica , Humanos , Ratones , Proteoma/genética , Proteómica , Proteína Reelina , Esquizofrenia/genética , Esquizofrenia/metabolismo , Transfección
15.
J Proteomics ; 76 Spec No.: 275-86, 2012 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-22579745

RESUMEN

Platelets play a fundamental role in hemostasis. Because they do not have a nucleus, proteomics is an ideal way to approach their biochemistry. Platelet proteomics is still a young field that emerged a decade ago. Initial platelet proteomic research focused on general proteome mapping followed by the exploration of sub-cellular compartments, the membrane proteome, and signaling pathways. The initial studies were later completed with the analysis of the platelet releasate and microparticle proteome. The success of these studies led to the application of platelet proteomics to the study of several pathologies where platelets play a fundamental role. Those include platelet-related disorders, such as storage pool disease, gray platelet syndrome, and Quebec platelet disorder; diseases where unwanted platelet activation is highly relevant, such as thrombosis and cardiovascular disease; and other diseases, such as cystic fibrosis, uremia, or Alzheimer's disease. In the present review article, we revise the most relevant proteomic studies on platelet-related diseases carried out to date, paying special attention to sample preparation requirements for platelet clinical proteomic studies. This article is part of a Special Issue entitled: Integrated omics.


Asunto(s)
Trastornos de las Plaquetas Sanguíneas/sangre , Plaquetas/metabolismo , Micropartículas Derivadas de Células/metabolismo , Sistemas de Liberación de Medicamentos , Proteoma/metabolismo , Proteómica/métodos , Animales , Biomarcadores/sangre , Trastornos de las Plaquetas Sanguíneas/tratamiento farmacológico , Plaquetas/patología , Micropartículas Derivadas de Células/patología , Humanos , Activación Plaquetaria
16.
J Proteomics ; 76 Spec No.: 287-96, 2012 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-22415276

RESUMEN

Platelet-derived microparticles (PMP) are elevated in a number of disorders (e.g. cardiovascular disease and cancer). In the present study, we have carried out a high-resolution 2-DE-based proteomic analysis of PMP originated following platelet activation with different stimulus. Flow cytometric analysis revealed a higher average number of microparticles when platelets are activated with shear (1800 s(-1)) compared to 0.5 U/mL thrombin. Regarding the proteomic analysis, 30 protein features were found to be differentially regulated between shear and thrombin groups in the pI 4-7 range, from which 28 were successfully identified by MS, corresponding to 26 open-reading frames. Signaling proteins constituted the major functional group, including membrane receptors, and adapters. Ingenuity Pathways Analysis (IPA) software revealed that 21 of the 26 differentially regulated unique proteins identified are part of a common network related to cell assembly and organization and cell morphology. Western blotting analyses confirmed that Dok-2 and the integrin α6 are differentially regulated in PMP depending on the platelet stimulus. Interestingly, both proteins participate in mechanisms regulating angiogenesis so could be part of PMP regulation of endothelial cells function. In conclusion, this study shows that platelets shed microparticles in different amounts and with a different proteome depending on the stimulus.This article is part of a Special Issue entitled: Integrated omics.


Asunto(s)
Plaquetas/metabolismo , Micropartículas Derivadas de Células/metabolismo , Activación Plaquetaria/fisiología , Proteoma/metabolismo , Adulto , Plaquetas/citología , Femenino , Humanos , Masculino
17.
Arterioscler Thromb Vasc Biol ; 31(12): 2957-64, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-21921262

RESUMEN

OBJECTIVE: Our aim in this study was to provide novel information on the molecular mechanisms playing a major role in the unwanted platelet activation associated with ST-elevation myocardial infarction (STEMI). METHODS AND RESULTS: We compared the platelet proteome of 11 STEMI patients to a matched control group of 15 stable chronic ischemic cardiopathy patients. In addition, we did a prospective study to follow the STEMI patients over time. Proteins were separated by high-resolution 2D gel electrophoresis, identified by mass spectrometry, and validated by Western blotting. Platelets from STEMI patients on admission displayed 56 protein spot differences (corresponding to 42 unique genes) compared with the control group. The number of differences decreased with time during the patients' follow-up. Interestingly, the adapter protein CrkL and the active form of Src (phosphorylated in Tyr418) were found to be upregulated in platelets from STEMI patients. Major signaling pathways related to the proteins identified include integrin, integrin-linked kinase, and glycoprotein VI (GPVI) signaling. Interestingly, a study on an independent cohort of patients showed a higher degree of activation of GPVI signaling in STEMI patients. CONCLUSIONS: CrkL, the active form of Src, and GPVI signaling are upregulated in platelets from STEMI patients.


Asunto(s)
Síndrome Coronario Agudo/fisiopatología , Plaquetas/metabolismo , Proteínas Sanguíneas/metabolismo , Electrocardiografía , Infarto del Miocardio/sangre , Infarto del Miocardio/fisiopatología , Activación Plaquetaria/fisiología , Transducción de Señal/fisiología , Síndrome Coronario Agudo/sangre , Proteínas Adaptadoras Transductoras de Señales/sangre , Anciano , Estudios de Casos y Controles , Femenino , Estudios de Seguimiento , Humanos , Integrinas/sangre , Masculino , Persona de Mediana Edad , Proteínas Nucleares/sangre , Glicoproteínas de Membrana Plaquetaria/metabolismo , Estudios Prospectivos , Proteínas Serina-Treonina Quinasas/sangre , Proteómica , Regulación hacia Arriba , Familia-src Quinasas/sangre
18.
Int J Cardiol ; 150(3): 283-90, 2011 Aug 04.
Artículo en Inglés | MEDLINE | ID: mdl-20451270

RESUMEN

BACKGROUND: Atrial fibrillation (AF) is the most common cardiac arrhythmia found in clinical practice. We combined high-resolution two-dimensional gel electrophoresis (2-DE) and mass spectrometry (MS) to compare the atrial proteome of subjects with AF versus controls with sinus rhythm (SR). Our aim was to identify novel differentially regulated proteins that could be related to the development of the arrhythmia. METHODS: Human atrial appendage tissue samples from patients undergoing heart surgery with AF or SR were analyzed by high-resolution 2-DE. Proteins of interest were identified by MS and validated by western blotting and inmunohistochemistry. RESULTS: Our analysis allowed the detection of over 2300 protein spots per gel. Following differential image analysis, we found 22 spot differences between the AF and SR groups in the 4-7 isoelectric point range, leading to the identification of 15 differentially regulated proteins. The main group of proteins identified was that of heat shock proteins (HSPs), including TRAP-1, HspB3, HspΒ6 and AHA1. Some of the differences detected between AF and SR for the above proteins were due to post-translational modifications. In addition, we identified the structural protein fibulin-1 as down-regulated in atrial tissue from AF patients. CONCLUSIONS: High-resolution 2-DE analysis of human atrial tissue revealed that AF is associated with changes in structural proteins and an important number of HSPs. The lower expression of the structural protein fibulin-1 in atrial tissue from AF patients might reflect the myocardial structural changes that take place in the arrhythmia.


Asunto(s)
Apéndice Atrial/metabolismo , Fibrilación Atrial/metabolismo , Proteínas de Unión al Calcio/antagonistas & inhibidores , Regulación hacia Abajo/fisiología , Proteoma/antagonistas & inhibidores , Anciano , Anciano de 80 o más Años , Apéndice Atrial/química , Fibrilación Atrial/diagnóstico , Proteínas de Unión al Calcio/biosíntesis , Electroforesis en Gel Bidimensional/métodos , Femenino , Humanos , Masculino , Espectrometría de Masas/métodos , Persona de Mediana Edad , Proteoma/metabolismo
19.
PLoS One ; 5(10): e13404, 2010 Oct 14.
Artículo en Inglés | MEDLINE | ID: mdl-20976234

RESUMEN

BACKGROUND: Platelets play a fundamental role in pathological events underlying acute coronary syndrome (ACS). Because platelets do not have a nucleus, proteomics constitutes an optimal approach to follow platelet molecular events associated with the onset of the acute episode. METHODOLOGY/PRINCIPAL FINDINGS: We performed the first high-resolution two-dimensional gel electrophoresis-based proteome analysis of circulating platelets from patients with non-ST segment elevation ACS (NSTE-ACS). Proteins were identified by mass spectrometry and validations were by western blotting. Forty protein features (corresponding to 22 unique genes) were found to be differentially regulated between NSTE-ACS patients and matched controls with chronic ischemic cardiopathy. The number of differences decreased at day 5 (28) and 6 months after the acute event (5). Interestingly, a systems biology approach demonstrated that 16 of the 22 differentially regulated proteins identified are interconnected as part of a common network related to cell assembly and organization and cell morphology, processes very related to platelet activation. Indeed, 14 of those proteins are either signaling or cytoskeletal, and nine of them are known to participate in platelet activation by αIIbß3 and/or GPVI receptors. Several of the proteins identified participate in platelet activation through post-translational modifications, as shown here for ILK, Src and Talin. Interestingly, the platelet-secreted glycoprotein SPARC was down-regulated in NSTE-ACS patients compared to stable controls, which is consistent with a secretion process from activated platelets. CONCLUSIONS/SIGNIFICANCE: The present study provides novel information on platelet proteome changes associated with platelet activation in NSTE-ACS, highlighting the presence of proteins involved in platelet signaling. This investigation paves the way for future studies in the search for novel platelet-related biomarkers and drug targets in ACS.


Asunto(s)
Síndrome Coronario Agudo/metabolismo , Proteínas Sanguíneas/fisiología , Proteómica , Transducción de Señal , Anciano , Proteínas Sanguíneas/metabolismo , Western Blotting , Electroforesis en Gel Bidimensional , Femenino , Humanos , Masculino , Espectrometría de Masas , Persona de Mediana Edad , Activación Plaquetaria , Biología de Sistemas
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