Oil pollution is a common type of soil organic pollution that is harmful to the ecosystem. Bioremediation, particularly microbe-assisted phytoremediation of oil-contaminated soil, has become a research hotspot in recent years. In order to explore more appropriate bioremediation strategies for soil oil contamination and the mechanism of remediation, we compared the remediation effects of three plants when applied in combination with a microbial agent and biochar. The combined remediation approach of Tagetes erecta, microbial agent, and biochar exhibited the best plant growth and the highest total petroleum hydrocarbons degradation efficiency (76.60%). In addition, all of the remediation methods provided varying degrees of restoration of carbon and nitrogen contents of soils. High-throughput sequencing found that microbial community diversity and richness were enhanced in most restored soils. Some soil microorganisms associated with oil degradation and plant growth promotion such as Cavicella, C1_B045, Sphingomonas, MND1, Bacillus and Ramlibacter were identified in this study, among which Bacillus was the major component in the microbial agent. Bacillus was positively correlated with all soil remediation indicators tested and was substantially enriched in the rhizosphere of T. erecta. Functional gene prediction of the soil bacterial community based on the KEGG database revealed that pathways of carbohydrate metabolism and amino acid metabolism were up-regulated during remediation of oil-contaminated soils. This study provides a potential method for efficient remediation of oil-contaminated soils and thoroughly examines the biochar-bacteria-plant combined remediation mechanisms of oil-contaminated soil, as well as the combined effects from the perspective of soil bacterial communities.
The interaction between invasive plants and soil microbial communities is critical for plant establishment. However, little is known about the assembly and co-occurrence patterns of fungal communities in the rhizosphere soil of Amaranthus palmeri. The soil fungal communities and co-occurrence networks were investigated in 22 invaded patches and 22 native patches using high-throughput Illumina sequencing. Despite having little effect on alpha diversity, plant invasion significantly altered the composition of the soil fungal community (ANOSIM, p < 0.05). Fungal taxa associated with plant invasion were identified using linear discriminant analysis effect size (LEfSe). In the rhizosphere soil of A. palmeri, Basidiomycota was significantly enriched, while Ascomycota and Glomeromycota were significantly reduced when compared to native plants. At the genus level, the invasion of A. palmeri dramatically increased the abundance of beneficial fungi and potential antagonists such as Dioszegia, Tilletiopsis, Colacogloea, and Chaetomium, while it significantly decreased the abundance of pathogenic fungi such as Alternaria and Phaeosphaeria. Plant invasion reduced the average degree and average path length, and increased the modularity value, resulting in a less complex but more effective and stable network. Our findings improved the knowledge of the soil fungal communities, network co-occurrence patterns, and keystone taxa in A. palmeri-invaded ecosystems.
Introduction: Plant invasion can profoundly alter ecosystem processes driven by microorganisms. The fundamental mechanisms linking microbial communities, functional genes, and edaphic characteristics in invaded ecosystems are, nevertheless, poorly understood. Methods: Here, soil microbial communities and functions were determined across 22 Amaranthus palmeri (A. palmeri) invaded patches by pairwise 22 native patches located in the Jing-Jin-Ji region of China using high-throughput amplicon sequencing and quantitative microbial element cycling technologies. Results: As a result, the composition and structure of rhizosphere soil bacterial communities differed significantly between invasive and native plants according to principal coordinate analysis. A. palmeri soils exhibited higher abundance of Bacteroidetes and Nitrospirae, and lower abundance of Actinobacteria than native soils. Additionally, compared to native rhizosphere soils, A. palmeri harbored a much more complex functional gene network with higher edge numbers, average degree, and average clustering coefficient, as well as lower network distance and diameter. Furthermore, the five keystone taxa identified in A. palmeri rhizosphere soils belonged to the orders of Longimicrobiales, Kineosporiales, Armatimonadales, Rhizobiales and Myxococcales, whereas Sphingomonadales and Gemmatimonadales predominated in the native rhizosphere soils. Moreover, random forest model revealed that keystone taxa were more important indicators of soil functional attributes than edaphic variables in both A. palmeri and native rhizosphere soils. For edaphic variables, only ammonium nitrogen was a significant predictor of soil functional potentials in A. palmeri invaded ecosystems. We also found keystone taxa in A. palmeri rhizosphere soils had strong and positive correlations with functional genes compared to native soils. Discussion: Our study highlighted the importance of keystone taxa as a driver of soil functioning in invaded ecosystem.
Pear is a kind of common temperate fruit, whose metabolite composition that contributes to the difference in fruit quality is unclear. This study identified and quantified the metabolites using a widely targeted LC-MS/MS approach in three pear species, including Pyrus bretschneideri (PB), Pyrus usssuriensis (PU) and Pyrus pyrifolia (PP). A total of 493 metabolites were identified, consisting of 68 carbohydrates, 47 organic acids, 50 polyphenols, 21 amino acids, 20 vitamins, etc. The results of PCA and OPLS-DA demonstrated that the metabolite compositions differed distinctly with cultivar variability. Our results also involved some metabolic pathways that may link to the fruit quality based on KEGG pathway analysis, the pathway of phenylalanine metabolism revealed significant differences between PB and PP (p < 0.05). Furthermore, the study selected D-xylose, formononetin, procyanidin A1 and ß-nicotinamide mononucleotide as the major differentially expressed metabolites in the three species. The present study can open new avenues for explaining the differences in fruit quality of the major commercial pear cultivars in China.
The associations between functional traits and species distributions across environments have attracted increasing interest from ecologists and can enhance knowledge about how plants respond to the environments. Here, we applied a hierarchical generalized linear model to quantifying the role of functional traits in plant occurrence across topographic gradients. Functional trait data, including specific leaf area, maximum height, seed mass and stem wood density, together with elevation, aspect and slope, were used in the model. In our results, species responses to elevation and aspect were modulated by maximum height and seed mass. Generally, shorter tree species showed positive responses to incremental elevation, while this trend became negative as the maximum height exceeded 22 m. Most trees with heavy seeds (> 1 mg) preferred more southerly aspects where the soil was drier, and those light-seed trees were opposite. In this study, the roles of maximum height and seed mass in determining species distribution along elevation and aspect gradients were highlighted where plants are confronted with low-temperature and soil moisture deficit conditions. This work contributes to the understanding of how traits may be associated with species occurrence along mesoscale environmental gradients.
Glochidion plants and Epicephala moths played different roles and kept the balance in the mutualism. We studied the four coexisting Epicephala species on Glochidion sphaerogynum in detail and reconstructed the phylogenic tree of 40 Gracillariidae species. The results showed that one of them (Epicephala impolliniferens) did not pollinate G. sphaerogynum, because of lacking the specialized structure of carrying pollen. These results suggested that E. impolliniferens acted as a 'cheater' in the system. The phylogenetic analyses suggested that E. impolliniferens derived from a pollinating species, and had secondarily gave up the ability to pollinate. This is a typical phenomenon of mutualism reversal. The phenomenon exhibits the co-evolutionary diversification under selection pressures.
Biological Evolution , Herbivory , Malpighiales/physiology , Moths/physiology , Pollination , Symbiosis , Animals , Phylogeny
The ornamental plants of Althaea rosea Cavan. were exposed to cadmium (Cd) at concentrations of 0, 5, 10, 50 and 100 mg·kg-1 to evaluate the potential of accumulation capacity and tolerance ability. The results showed that A. rosea was a Cd tolerance plant, and Cd accumulation was 4.57 mg·kg-1 in shoot and 9.43 mg·kg-1 in root at 100 mg·kg-1 Cd concentration. The high tolerance ability could be explained by the distribution characteristics and the defense mechanism. The accumulated Cd was allocated in root, older leaves, and subcellular level of the cell wall and supernatant soluble fraction to protect the physiological leaves from damage. The defense systems included the enzyme systems of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT) and ascorbate peroxidase (APX) that could effectively eliminate the excessive ROS, and the non-enzymes system of total soluble proteins and non-protein thiols (NP-SH) that played an important role in detoxification. Thus, A. rosea could be used as a potential species for phytoremediation in Cd contaminated areas and beautify the environment.
Althaea , Cadmium , Antioxidants , Biodegradation, Environmental , Catalase , Plant Leaves , Plant Roots , Superoxide Dismutase
BACKGROUND: As global climate change accelerates, ecologists and conservationists are increasingly investigating changes in biodiversity and predicting species distribution based on species observed at sites, but rarely consider those plant species that could potentially inhabit but are absent from these areas (i.e., the dark diversity and its distribution). Here, we estimated the dark diversity of vascular plants in China and picked up threatened dark species from the result, and applied maximum entropy (MaxEnt) model to project current and future distributions of those dark species in their potential regions (those regions that have these dark species). METHODS: We used the Beals probability index to estimate dark diversity in China based on available species distribution information and explored which environmental variables had significant impacts on dark diversity by incorporating bioclimatic data into the random forest (RF) model. We collected occurrence data of threatened dark species (Eucommia ulmoides, Liriodendron chinense, Phoebe bournei, Fagus longipetiolata, Amentotaxus argotaenia, and Cathaya argyrophylla) and related bioclimatic information that can be used to predict their distributions. In addition, we used MaxEnt modeling to project their distributions in suitable areas under future (2050 and 2070) climate change scenarios. RESULTS: We found that every study region's dark diversity was lower than its observed species richness. In these areas, their numbers of dark species are ranging from 0 to 215, with a generally increasing trend from western regions to the east. RF results showed that temperature variables had a more significant effect on dark diversity than those associated with precipitation. The results of MaxEnt modeling showed that most threatened dark species were climatically suitable in their potential regions from current to 2070. DISCUSSIONS: The results of this study provide the first ever dark diversity patterns concentrated in China, even though it was estimated at the provincial scale. A combination of dark diversity and MaxEnt modeling is an effective way to shed light on the species that make up the dark diversity, such as projecting the distribution of specific dark species under global climate change. Besides, the combination of dark diversity and species distribution models (SDMs) may also be of value for ex situ conservation, ecological restoration, and species invasion prevention in the future.
The washed and unwashed current (C) and previous year (C + 1) needles, branches and top soils of Pinus tabulaeformis trees were sampled at five sites Haitai industrial district (HT), Puji River (PJ), Fukang road (FK), Residential area (RA) and Baxian Mountain (BX) in Tianjin along an urban-rural gradient and analyzed for heavy metals (Cu, Mn, Zn, Pb and Cd) concentrations via ICP. C + 1 needles generally had higher Mn, Pb, Cd than C needles while the opposite was for Cu and Zn. Total Cu, Zn, Pb, Cd in soils peaked at HT and decreased at RA and BX. Heavy metals were generally higher in the unwashed needles than the washed needles at all sites. Meanwhile MDA, soluble sugar and free proline concentration in needles were increased with the increasing of heavy metal contents along the urban-rural gradient, further correlated with the heavy metal contents.
Air Pollutants/analysis , Environmental Monitoring/methods , Metals, Heavy/analysis , Pinus/drug effects , Plant Leaves/drug effects , Urbanization , China , Pinus/chemistry , Plant Leaves/chemistry
Flowering synchrony can play an important role in plants' reproductive success, which is essential for the successful establishment and spread of invasive plants. Although flowering synchrony has been found to be closely related to climatic factors, the effects of variation in such factors along latitudinal gradient on flowering synchrony and the role of flowering synchrony in the reproductive success of invading populations remain largely unexplored. In a 2-year field study, we examined the latitudinal variation of flowering phenology, especially flowering synchrony, in an invasive plant, Spartina alterniflora, along coastal China, and its relationship with population seed set across three climatic zones. We found that first flowering date was delayed, and flowering synchrony increased with increasing latitude. Flowering synchrony was negatively related to temperature during flowering season but not to soil properties or precipitation, suggesting that climate has shaped the latitudinal pattern of flowering synchrony. Moreover, a positive correlation between flowering synchrony and seed set across latitudes indicates the possible role of flowering synchrony in the latitudinal pattern of sexual reproduction in S. alterniflora These results suggest that, in addition to the effects of climate on the growth of invasive species, climatic factors can play an important role in the invasion success of alien plants by regulating the flowering synchrony and thus the reproductive success of invasive plants.
Flowers/physiology , Poaceae/physiology , China , Climate , Geography , Introduced Species , Seeds
The floral scent plays the important key role in maintaining the obligate pollination mutualism between Glochidion plants and Epicephala moths. In the study, the dynamic headspace adsorption technique was employed to collect the floral scent emitted by Glochidion puberum, gas chromatography coupled with mass spectrometry (GC-MS) was used for the detection and identification of volatile chemical components in headspace samples of flowers from G. puberum. The peak area normalization was used to determine the relative contents of each odour component. The results showed that 45 compounds mainly consisting of monoterpenes and sesquiterpenes were isolated from the floral scent produced by G. puberum. Especially, both linalool (38.06%) and ß-elemene (23.84%) were considered as the major scent components of G. puberum. It was speculated that linalool and ß-elemene may be the two potential compounds attracting female Epicephala moths. The study provided the basic data for further electroantennographic detection and bioassays to identify the compounds having the actual physiological activity to female Epicephala moths.
Flowers/chemistry , Gas Chromatography-Mass Spectrometry , Magnoliopsida/chemistry , Monoterpenes/analysis , Odorants/analysis , Sesquiterpenes/analysis , Acyclic Monoterpenes , Adsorption , Animals , Female , Moths , Pheromones , Pollination
Profile distribution characteristics of organic carbon (C), total nitrogen (N), total phosphorus (P) and total sulfur (S) were studied in two typical marshes including Carex lasiocarpa marsh and Phragmites australis marsh in the Sanjiang Plain. Sedimentary characteristics of typical mashes were analyzed. The results showed that vertically these soil chemical elements also varied, showing obvious stratification and enrichment. In a soil profile, soil organic C under both vegetation communities gradually decreased; soil total N first increased and then decreased under both; total P under Carex lasiocarpa first decreased and then increased, whereas it decreased with the increasing depth under Carex lasiocarpa; total S was reduced with increasing depth under both marshes. Total N, total P and total S were all strongly correlated with soil organic C (P < 0.01); soil organic C was strongly correlated with bulk density (P < 0.01). Our study also illustrated that the vegetation types had different influences for organic C, total N, total P and total S of the marsh profiles. Environmental 137Cs and 210Pb dating techniques were applied to determine recent sedimentation rates, and the constant rate of supply (CRS) was applied to deduce the age of sediment core, and the results showed that the mean sedimentation rate was 0.33 cm x a(-1), and the sedimentation fluxes ranged 0.03-0.48 g x (cm2 x a)(-1) [Mean = 0.29 g x (cm2 x a) -1].
Geologic Sediments/chemistry , Nitrogen/analysis , Phosphorus/analysis , Sulfur/analysis , Wetlands , Carex Plant , China , Poaceae , Soil/chemistry
To investigate the effects of Spartina alterniflora on heavy metals pollution of intertidal sediments, sediment cores of a S. alterniflora salt marsh and a mudflat in Bohai Bay, China were analyzed. The results showed that S. alterniflora caused higher total C and P, but lower bulk density and electrical conductivity. The levels of Cd, Cu and Pb were higher in S. alterniflora sediment. Both Cd and Zn were higher than the probable effect level at both sites, indicating their toxicological importance. The geo-accumulation and potential ecological risk indexes revealed higher metal contamination in S. alterniflora sediment. Multivariate analysis implied that anthropogenic activities altered mobility and bioavailability of heavy metals. The percentage of mobile heavy metals was higher in S. alterniflora sediment, indicating improvement of conversion from the immobilized fraction to the mobilized fraction. These findings indicate that S. alterniflora may facilitate accumulation of heavy metals and increase their bioavailability and mobility.
Bays , Geologic Sediments/analysis , Metals, Heavy/analysis , Poaceae , Water Pollutants, Chemical/analysis , Wetlands , China
Stream water samples under the Korean pine broad-leaved forest, spruce-fir forest, and larch plantation in Liangshui Nature Reserve of Xiaoxing' an Mountains were collected monthly from March to October 2006 to study the dynamic changes of their hydrochemical characteristics. The results indicated that the content of major cations in the streams was in the sequence of Ca2+ > Na+ > K+ > Mg2+, and that of anions was HCO3(-) > SO4(2-) > NO3(-) > Cl(-). The average content of Na+, Ca2+, Mg2+, Fe2+ and Fe3+ was in the order of spruce-fir forest > larch plantation > Korean pine broad-leaved forest, while that of K+ was in the order of larch plantation > spruce-fir forest > Korean pine broad-leaved forest. The average monthly content of anions in stream water was the highest under larch plantation.
Fresh Water/chemistry , Inorganic Chemicals/analysis , Seasons , Trees/growth & development , China , Environmental Monitoring , Picea/growth & development , Pinus/growth & development , Population Dynamics , Rivers , Trees/classification
The study on the profile distribution and accumulation characteristics of organic carbon (C) and total nitrogen (N) in two typical marshes in Sanjiang Plain showed that on the sediment profiles of Carex lasiocarpa marsh and Phragmites communis marsh, there existed distinct deposition horizon and illuviation horizon. In deposition horizon (0-60 cm), the average contents of organic C and total N were about 96 and 184 g x kg(-1), and 7.4 and 17.6 g x kg(-1), respectively, while in illuviation horizon, they were at low level. The contents of organic C and total N were exponentially decreased with increasing depth, and had significant correlations with bulk density (P < 0.01). The organic C density was the highest at the depth of 20-40 cm. In the deposition horizon of the two marshes, the stocks of organic C and total N were 1.83 x 10(4) and 1.73 x 10(4) t x km(-2), and 1.45 x 10(3) and 1.67 x 10(3) t x km(-2), respectively, and at the depth of 0-100 cm, they were 2.86 x 10(4) and 2.62 x 10(4) t x km(-2), and 2.18 x 10(3) and 2.49 x 10(3) t x km(-2), respectively. Vegetation type had definite effects on the content and stock of organic C and total N in the marsh profiles.
Carbon/analysis , Nitrogen/analysis , Soil/analysis , Wetlands , China , Ecosystem , Environmental Monitoring/methods , Organic Chemicals/analysis
The potential capacity of soil to sequester carbon in response to global warming is strongly regulated by the ratio of rhizosphere respiration to respiration by soil microbial decomposers, because of their different temperature sensitivities. To quantify relative contributions of rhizosphere respiration to total soil respiration as influenced by forest stand development, we conducted a trenching study in two larch (Larix gmelini (Rupr.) Rupr.) plantations, aged 17 and 31 years, in northeastern China. Four plots in each plantation were randomly selected and trenched in early May 2001. Soil surface CO2 effluxes both inside and outside the plots were measured from May 2001 to August 2002. Soil respiration (i.e., the CO2 effluxes outside the trenched plots) varied similarly in the two plantations from 0.8 micromol m(-2) s(-1) in winter to 6.0 micromol m(-2) s(-1) in summer. Rhizosphere respiration (i.e., CO2 efflux outside the trenched plots minus that inside the plots) varied from 0.2 to 2.0 micromol m(-2) s(-1) in the old forest and from 0.3 to 4.0 micromol m(-2) s(-1) in the young forest over the seasons. Rhizosphere respiration, on average, accounted for 25% of soil respiration in the old forest and 65% in the young forest. Rhizosphere and soil respiration were significantly correlated with soil temperature but not with soil water content. We conclude that the role forests play in regulating climate change may depend on their age.
Larix/metabolism , Plant Roots/metabolism , Soil Microbiology , Soil , Agriculture , Cell Respiration , China , Seasons , Time Factors , Water
