Plasmon-modulated bistable second-harmonic generation in a nonlinear microcavity coupled to a metallic nanoparticle.

Multiple nonlinear effects with second-harmonic (SH) generation and optical bistability (OB) are highly desired but rather rare due to insufficient intrinsic nonlinearity in most nonlinear media. Here, a nonlinear microcavity coupled to a metallic nanoparticle (MNP) is suggested to realize the bistable SH generation. When two counterpropagating driving fields are injected into the cavity, a traditional SH pathway is constructed via the two-photon process of fundamental-harmonic (FH) photons. In addition, we report the coexistence between the SH and OB effects under the condition that the strong excitation and the detuning management for the driving fields boost system nonlinear responses. In the presence of a control field toward the MNP, our calculation finds that the traditional and plasmon-induced SH pathways in the present system allow enhancing the SH conversion efficiency and reducing the OB thresholds simultaneously. With the control field intensity increasing, a linear growth rate for the SH efficiency maximum is achieved. Furthermore, the relative phase between the driving and control fields has profound effects on modulating the bistable SH efficiency, the bistable interval and the thresholds.

Providing or receiving alloparental care promote partner preference and alter central oxytocin and dopamine systems in adult mandarin voles.

Juveniles of cooperative breeding species usually remain in the natal area and provide care to younger siblings, a behavior considered one form of alloparenting in the natural condition. Previous studies have demonstrated the effects of providing or receiving alloparental care on adult behaviors, including anxiety-like behavior, social interaction, and parental behavior, but little is known about the influences on species-typical bonding behaviors, such as pair-bond formation. In this study, we explored this concept using socially monogamous mandarin voles (Lasiopodomys mandarinus). As the oxytocin (OT) and dopamine systems are involved in alloparental and pair-bonding behaviors, we also examined the levels of central OT and tyrosine hydroxylase (TH), as well as OT receptor (OTR) and dopamine D1-type and D2-type receptors (D1R and D2R) mRNA expression in the nucleus accumbens (NAcc) and amygdala to investigate the underlying mechanisms. Our results show that mandarin voles providing alloparental care to younger siblings displayed facilitation of partner preference formation, lower levels of OT expression in the paraventricular nucleus of the hypothalamus (PVN) and lateral hypothalamus (LH), and increased OTR and D2R mRNA expression in the NAcc compared to controls. Individuals receiving alloparental care also demonstrated facilitation of partner preference formation in adult voles. Additionally, alloparental care enhanced OT expression in the PVN, anterior medial preoptic nucleus (MPOAa), medial amygdala (MeA), and TH expression in the ventral tegmental area (VTA) and zona incerta (ZI). Furthermore, males displayed decreased D1R mRNA expression in the NAcc, whereas females showed slightly increased D2R expression in the amygdala. These results demonstrate that providing or received alloparental care can promote partner preference formation in monogamous species and that these changes are associated with altered OT and dopamine levels and their receptors in specific brain regions.

Influence of the freeze-thaw process on coal gangue-based ecological restoration materials: performance and ecological risk assessment of heavy metals.

Materials made from coal gangue (CGEr) can be used for ecological restoration in mining areas. This paper comprehensively analyzed the influence of the freeze-thaw process on the performance of CGEr and the environmental risk of heavy metals. The safety of CGEr was assessed by sediment quality guidelines (SQGs), geological accumulation index (Igeo), potential ecological risk index (RI), and risk assessment code (RAC). The freeze-thaw process reduced the performance of CGEr, that the water retention of CGEr decreased from 1.07 (g water/g soil) to 0.78 (g water/g soil), and the loss rate of soil and water increased from 1.07 to 4.30%. The freeze-thaw process reduced the ecological risk of CGEr, the Igeo of Cd and Zn decreased from 1.14 to 0.13 and 0.53 to 0.3, respectively, and the RI of Cd decreased by 50% from 0.297 to 0.147. Reaction experiments and correlation analysis showed that the freeze-thaw process destroyed the pore structure of the material, resulting in the degradation of its properties. Water molecules undergo phase transformation during freeze-thaw, and particles were squeezed by ice crystals to form agglomerates. The formation of granular aggregates resulted in the enrichment of heavy metals in the aggregates. Influenced by the freeze-thaw process, specific functional groups such as -OH were more exposed on the surface of the material, which affected the occurrence form of heavy metals and thus reduced the potential ecological risk of the material. This study provides an important basis for the better application of ecological restoration materials of CGEr.

Ppm-level oxygen detection system based on deep-ultraviolet-absorption spectroscopy.

Oxygen is a gas essential to human life and industrial processes. Here, we developed a highly sensitive oxygen gas sensor based on deep ultraviolet absorption spectroscopy between 180 and 200 nm. The implemented method relies on differential absorption spectra extracted from the obtained high-resolution absorption spectra. The detection capability was greatly improved (six-fold) by eliminating air from the open optical path, achieved by purging the entire system with pure nitrogen. A linear relationship was obtained between the optical parameter and the oxygen concentration with a slope of 0.107 and determination coefficient of 0.999. A detection limit of 24 ppm per meter was determined with a response time of 25 s. Good repeatability (standarddeviation=16ppm) and stability were confirmed. We demonstrated that this system can detect ppm oxygen levels with high sensitivity and low uncertainty.

Radially polarized cosine non-uniformly correlated beams and their propagation properties.

We introduce a kind of radially polarized partially coherent (RPPC) beam with a prescribed non-uniform correlation function, called a radially polarized cosine non-uniformly correlated (RPCNUC) beam. Based on the extended Huygens-Fresnel principle, we study the propagation properties in free space and in a turbulent atmosphere. Unlike RPPC beams with uniform coherence, RPCNUC beams possess the invariance of dark hollow cores and radial polarization, and exhibit self-focusing properties. In a turbulent atmosphere, the intensity distribution demonstrates self-healing properties over a certain propagation distance. We also investigate how to adjust the beam parameters to reduce the turbulence-induced degradation in detail.

Circ_0072995 drives cervical cancer development by regulating the miR-29a/WDR5 axis.

Circular RNA_0072995 (Circ_0072995) is involved in the pathogenesis of cancers; however, no study has investigated its role in cervical cancer. Therefore, we aimed to investigate the function of circ_0072995 in cervical cancer. Normal human cervical epithelial cells (hCECs), HeLa cells, and forty female nude BALB/c mice were used. Immunohistochemistry, invasion assays, flow cytometric analysis, luciferase assays, and tumour volume measurements were performed to explore the potential mechanism. Circ_0072995 was significantly up-regulated in cancer tissues, and its level was markedly correlated with the International Federation of Gynecology and Obstetrics system (FIGO) staging. In vitro studies revealed that circ_0072995 interacts with miR-29a to induce WD repeat domain 5 (WDR5) expression and promotes the proliferation and invasion of cells, but inhibits apoptosis of cells. Knockdown of circ_0072995 or WDR5, or overexpression of miR-29a significantly inhibited tumour growth in vivo. In conclusion, circ_0072995 promoted cervical cancer development by inducing miR-29a-mediated WDR5 expression.Impact statementWhat is already known on this subject? Global Cancer Statistics 2020 estimated that there were 1 021,494 new cases of cervical cancer and 439 201 deaths from cervical cancer. Circ_0072995 was first shown to promote breast cancer development in 2018. Subsequent studies have revealed that circ_0072995 is also involved in the development of other cancers, including epithelial ovarian cancer and hepatocellular carcinoma. However, no studies have explored the association between circ_0072995 and cervical cancer.What do the results of this study add? We hypothesized that circ_0072995 drives cervical cancer development by sponging miRNAs and inducing the expression of key factors involved in tumorigenesis. Based on this hypothesis, we investigated the role of circ_0072995 in cervical cancer and paracancerous tissues and explored the underlying mechanism in both in vitro and in vivo studies.What are the implications of these findings for clinical practice and/or further research? For the first time, our study revealed the key role of WDR5 in cervical cancer progression regulated by circ_0072995. We first reported the promoting effects of circ_0072995 in cervical cancer development by inducing miR-29a mediated WDR5 expression and also revealed the therapeutic potential of circ_0072995, miR-29a, and WDR5 in cervical cancer.

Practical application of European biological variation combined with Westgard Sigma Rules in internal quality control.

OBJECTIVES: Westgard Sigma Rules is a statistical tool available for quality control. Biological variation (BV) can be used to set analytical performance specifications (APS). The European Federation of Clinical Chemistry and Laboratory Medicine (EFLM) regularly updates BV data. However, few studies have used robust BV data to determine quality goals and design a quality control strategy for tumor markers. The aim of this study was to derive APS for tumor markers from EFLM BV data and apply Westgard Sigma Rules to establish internal quality control (IQC) rules. METHODS: Precision was calculated from IQC data, and bias was obtained from the relative deviation of the External quality assurance scheme (EQAS) group mean values and laboratory-measured values. Total allowable error (TEa) was derived using EFLM BV data. After calculating sigma metrics, the IQC strategy for each tumor marker was determined according to Westgard Sigma Rules. RESULTS: Sigma metrics achieved for each analyte varied with the level of TEa. Most of these tumor markers except neuron-specific enolase reached 3σ or better based on TEamin. With TEades and TEaopt set as the quality goals, almost all analytes had sigma values below 3. Set TEamin as quality goal, each analyte matched IQC muti rules and numbers of control measurements according to sigma values. CONCLUSIONS: Quality goals from the EFLM BV database and Westgard Sigma Rules can be used to develop IQC strategy for tumor markers.

Interleukin-33 regulates the endoplasmic reticulum stress of human myometrium via an influx of calcium during initiation of labor.

Background: Inflammation is currently recognized as one of the major causes of premature delivery. As a member of the interleukin-1ß (IL-1ß) family, interleukin-33 (IL-33) has been shown to be involved in normal pregnancy as well as a variety of pregnancy-related disorder. This study aims to investigate the potential function of IL-33 in uterine smooth muscle cells during labor. Methods: Myometrium samples from term pregnant (≥37 weeks gestation) women were either frozen or cells were isolated and cultured. Immunohistochemistry and western blotting were used to assess the distribution of IL-33. Cultured cells were incubated with lipopolysaccharide (LPS) to mimic inflammation as well as in the presence of 4µ8C (IRE1 inhibitor III) to block endoplasmic reticulum (ER) stress and BAPTA-AM, a calcium chelator. Results: LPS reduced the expression of nuclear IL-33 in a time-limited manner and induced ER stress. However, knockdown of IL-33 increased LPS-induced calcium concentration, ER stress and phosphorylation of nuclear factor kappa-B (NF-κB), and P38 mitogen-activated protein kinase (P38 MAPK). In addition, siRNA IL-33 further stimulates LPS enhanced cyclooxygenase-2 (COX-2) expression via NF-κB and p38 pathways. IL-33 expression was decreased in the nucleus with the onset of labor. LPS-induced ER stress and increased expression of the labor-associated gene, COX-2, as well as IL-6 and IL-8 in cultured myometrial cells. IL-33 also increased COX-2 expression, but after it was knocked down, the stimulating effect of LPS on calcium was enhanced. 4µ8C also inhibited the expression of COX-2 markedly. The expression of calcium channels on the membrane and intracellular free calcium ion were both increased which was accompanied by phosphorylated NF-κB and p38. Conclusions: These data suggest that IL-33 may be involved in the initiation of labor by leading to stress of the ER via an influx of calcium ions in human uterine smooth muscle cells. Funding: This study was supported by grants from the National Natural Science Foundation of China (No. 81300507).

Expression and clinical significance of CXCL17 and GPR35 in endometrial carcinoma.

Endometrial carcinoma is one of the most common gynecologic malignancies. CXCL17-CXCR8 (GPR35) axis is reported to play an indispensability role in tumors. Our purpose is to screen possible prognostic and immune-related factors in endometrial carcinoma by detecting the mRNA and protein expression of CXCL17 and CXCR8. We use the qRT-PCR method to test the mRNA expression of CXCL17 and CXCR8 in 35 pairs of endometrial carcinoma and adjacent tissue. The protein expression of CXCL17 and CXCR8 in 30 cases of normal proliferative endometrium, 30 cases of endometrial atypical hyperplasia and 50 cases of endometrial carcinoma was detected by tissue microarray immunohistochemistry. There was no significant difference in the positive expression rate between endometrial adenocarcinoma tissue and endometrial atypical hyperplasia tissue (P > 0.05). But significantly better than normal proliferative tissue (P < 0.001). Correlation analysis of CXCR8 and CXCL17 in endometrial carcinoma showed a positive correlation (r = 0.9123, P < 0.0001). For patients with endometrial cancer, the overall survival (OS) of patients with high CXCL17 expression was significantly higher than that low CXCL17 expression (log-rank test, P < 0.0001), whereas CXCR8 had no statistical significance. But the expression of CXCR8 is an independent prognostic factor of OS in endometrial carcinoma patients. Our study showed that CXCL17 and CXCR8 may be involved in the occurrence and development of endometrial cancer. High expression of CXCL17 may be used as a biomarker for predicting survival. Because CXCL17 and CXCL18 are related to lymphocytes and immune regulation, they are expected to become potential targets for immunotherapy.

Tumor Purity in Preclinical Mouse Tumor Models.

Tumor biology is determined not only by immortal cancer cells but also by the tumor microenvironment consisting of noncancerous cells and extracellular matrix, together they dictate the pathogenesis and response to treatments. Tumor purity is the proportion of cancer cells in a tumor. It is a fundamental property of cancer and is associated with many clinical features and outcomes. Here we report the first systematic study of tumor purity in patient-derived xenograft (PDX) and syngeneic tumor models using next-generation sequencing data from >9,000 tumors. We found that tumor purity in PDX models is cancer specific and mimics patient tumors, with variation in stromal content and immune infiltration influenced by immune systems of host mice. After the initial engraftment, human stroma in a PDX tumor is quickly replaced by mouse stroma, and tumor purity then stays stable in subsequent transplantations and increases only slightly by passage. Similarly, in syngeneic mouse cancer cell line models, tumor purity also turns out to be an intrinsic property with model and cancer specificities. Computational and pathology analysis confirmed the impact on tumor purity by the diverse stromal and immune profiles. Our study deepens the understanding of mouse tumor models, which will enable their better and novel uses in developing cancer therapeutics, especially ones targeting tumor microenvironment. Significance: PDX models are an ideal experimental system to study tumor purity because of its distinct separation of human tumor cells and mouse stromal and immune cells. This study provides a comprehensive view of tumor purity in 27 cancers in PDX models. It also investigates tumor purity in 19 syngeneic models based on unambiguously identified somatic mutations. It will facilitate tumor microenvironment research and drug development in mouse tumor models.

Response mechanisms of snails to the pulling force and its potential application in vacuum suction.

Snails offer successful attachment and locomotion on horizontal and vertical surfaces, and have inspired extensive research to develop artificial adhesives. Here, we experimentally investigate the response mechanisms of snails to mechanical signals (pull-off force and crawling angle), then propose a way to design a bioinspired sucker, and theoretically analysis its application in vacuum suction. The experimental results indicate that the pull-off force is 7 N, about 22 times of its weight, and relatively invariant across the angles of the substrate. The flexible body increases work consumption by stretching and deformation during pulling, and a cavity with negative pressure differential can exist at the interface to help resist the pulling. We extract the flexible body and formation of a negative pressure cavity at the contact interface as two key elements of the bioinspired sucker, and the analysis shows that it can be adaptable to an extend range of products compared with conventional vacuum suction, which illustrates the potential for industrial or robotic manipulation.

Influence of flocculation conditioning on environmental risk of heavy metals in dredged sediment.

This study comprehensively analyzes the environmental risk of heavy metals (HMs) in the dewatering process of dredged sediment. First, the toxicity leaching capacity, total content, and chemical speciation of the HMs (As, Cd, Co, Cr, Cu, Hg, Mo, Pb, Sb, Sr, Tl, Zn) in dewatered sediment were determined using toxicity characteristic leaching procedure and modified Community Bureau of Reference sequential extraction procedure. The ecotoxicity and environmental risk of the HMs were then evaluated based on sediment quality guidelines, geo-accumulation index, enrichment factor, potential ecological risk, and risk assessment code. The results showed that flocculants reduced the ecological risk of Hg and Mo in sediment, and promoted the transformation of Mo, Sb, and Tl from the biologically active fraction to the more stable fraction. The transformation percentages of Mo, Sb, and Ti were 45.15%, 50.59% and 76.44%, respectively, after chitosan (CTS) treatment, and 64.55%, 31.75% and 99.90%, respectively, after cationic polyacrylamide (CPAM) treatment. CTS reduced the potential risks of bioavailable As, Cr, Cu, Mo, Sb, and Hg by (at most) 46.28%, 45.92%, 43.01%, 100.00%, 44.45%, and 39.69%, respectively, whereas CPAM decreased the ecotoxicity of bioavailable Cd, Co, and Zn by (at most) 27.49%, 16.10%, and 20.89%, respectively. According to the result of principal component analysis, the main factors affecting the environmental risk of HMs in sediment dewatering were nitrogenous organic compounds (mainly protein substances), fulvic acid substances, and minerals. The most essential factor was nitrogenous organic compounds, which accounted for 89.52% of the total variance. Chemical speciation was apparently more suitable for environmental risk assessment of sediment dewatering than total content. This study provides an important basis for controlling the environmental risk of HMs caused by sediment dewatering.

Involvement of Nrf2-HO-1/JNK-Erk Signaling Pathways in Aconitine-Induced Developmental Toxicity, Oxidative Stress, and ROS-Mitochondrial Apoptosis in Zebrafish Embryos.

Aconitine (AC), one of the bioactive diterpenoid alkaloids extracted from Aconitum plants, is widely used in traditional herbal medicine to treat various diseases. Emerging evidence indicates that AC has attracted great interest for its wide cardiotoxicity and neurotoxicity. However, the toxic effects of AC on embryonic development and its underlying mechanisms remain unclear. Here, a developmental toxicity assay of AC was performed on zebrafish embryos from 4 to 96 h post fertilization (hpf), and its underlying mechanisms were discussed. AC exposure impaired the cardiac, liver, and neurodevelopment. Especially, a high dose of AC (7.27 and 8.23 µM) exposure resulted in malformations at 72 and 96 hpf, including reduced body length, curved body shape, pericardial edema, yolk retention, swim bladder and brain developmental deficiency, and degeneration of dopaminergic neurons. High-concentration AC exposure caused a deficient cardiovascular system with cardiac dysfunctions, increased heart rates at 72 and 96 hpf, and reduced locomotor behavior at 120 hpf. AC treatment significantly increased the ROS level and triggered cell apoptosis in the heart and brain regions of embryos at 96 hpf in 7.27 and 8.23 µM AC treatment zebrafish. Oxidative stress was confirmed by reduced levels of T-SOD activity associated with accumulation of lipid peroxidation in larvae. The expression levels of oxidative stress-related genes (Nrf2, HO-1, Cat, and Sod-1) Erk1/2 and Bcl-2 were significantly downregulated at 96 hpf. The expression pattern of JNK and mitochondrial apoptosis-related genes (Bad, Bax, Cyto C, Casp-9, and Casp-3) was significantly upregulated. Taken together, all these parameters collectively provide the first evidence of AC-induced developmental toxicity in zebrafish embryo/larvae through ROS-medicated mitochondrial apoptosis involving Nrf2/HO-1 and JNK/Erk pathways.

Evolutionary and biomedical insights from a marmoset diploid genome assembly.

The accurate and complete assembly of both haplotype sequences of a diploid organism is essential to understanding the role of variation in genome functions, phenotypes and diseases1. Here, using a trio-binning approach, we present a high-quality, diploid reference genome, with both haplotypes assembled independently at the chromosome level, for the common marmoset (Callithrix jacchus), an primate model system that is widely used in biomedical research2,3. The full spectrum of heterozygosity between the two haplotypes involves 1.36% of the genome-much higher than the 0.13% indicated by the standard estimation based on single-nucleotide heterozygosity alone. The de novo mutation rate is 0.43 × 10-8 per site per generation, and the paternal inherited genome acquired twice as many mutations as the maternal. Our diploid assembly enabled us to discover a recent expansion of the sex-differentiation region and unique evolutionary changes in the marmoset Y chromosome. In addition, we identified many genes with signatures of positive selection that might have contributed to the evolution of Callithrix biological features. Brain-related genes were highly conserved between marmosets and humans, although several genes experienced lineage-specific copy number variations or diversifying selection, with implications for the use of marmosets as a model system.

Systematic assessment of dredged sludge dewaterability improvement with different organic polymers based on analytic hierarchy process.

Organic polymeric flocculants are commonly used in improving dredged sludge dewaterability, but less attention has been paid to residual water quality. In this paper, the effects of cationic etherified starch (CS) and poly-dimethyl diallyl ammonium chloride (PDDA) on dredged sludge dewatering efficiency and residual water quality of Baiyangdian lake were comprehensively investigated and evaluated by analytic hierarchy process (AHP). The results indicated that PDDA had stronger electrical effect and flocculation performance compared with CS, resulting in more efficient dewatering performance. PDDA can reduce the pollutants of discharged residual water, while CS significantly promoted the increase of NH4+-N and NO3--N in the residual water. The increase of NH4+-N in the residual water of CS was due to the release of dredged sludge, while the increase of NO3--N was introduced by CS leaching. AHP showed that PDDA performed better in flocculation treatment of dredged sludge than other organic polymers. This work provides a method for optimization of flocculation treatment for dredged sludge dewaterability.

Platypus and echidna genomes reveal mammalian biology and evolution.

Egg-laying mammals (monotremes) are the only extant mammalian outgroup to therians (marsupial and eutherian animals) and provide key insights into mammalian evolution1,2. Here we generate and analyse reference genomes of the platypus (Ornithorhynchus anatinus) and echidna (Tachyglossus aculeatus), which represent the only two extant monotreme lineages. The nearly complete platypus genome assembly has anchored almost the entire genome onto chromosomes, markedly improving the genome continuity and gene annotation. Together with our echidna sequence, the genomes of the two species allow us to detect the ancestral and lineage-specific genomic changes that shape both monotreme and mammalian evolution. We provide evidence that the monotreme sex chromosome complex originated from an ancestral chromosome ring configuration. The formation of such a unique chromosome complex may have been facilitated by the unusually extensive interactions between the multi-X and multi-Y chromosomes that are shared by the autosomal homologues in humans. Further comparative genomic analyses unravel marked differences between monotremes and therians in haptoglobin genes, lactation genes and chemosensory receptor genes for smell and taste that underlie the ecological adaptation of monotremes.

Mesh Denoising via Adaptive Consistent Neighborhood.

In this paper, we propose a novel guided normal filtering followed by vertex updating for mesh denoising. We introduce a two-stage scheme to construct adaptive consistent neighborhoods for guided normal filtering. In the first stage, we newly design a consistency measurement to select a coarse consistent neighborhood for each face in a patch-shift manner. In this step, the selected consistent neighborhoods may still contain some features. Then, a graph-cut based scheme is iteratively performed for constructing different adaptive neighborhoods to match the corresponding local shapes of the mesh. The constructed local neighborhoods in this step, known as the adaptive consistent neighborhoods, can avoid containing any geometric features. By using the constructed adaptive consistent neighborhoods, we compute a more accurate guide normal field to match the underlying surface, which will improve the results of the guide normal filtering. With the help of the adaptive consistent neighborhoods, our guided normal filtering can preserve geometric features well, and is robust against complex shapes of surfaces. Intensive experiments on various meshes show the superiority of our method visually and quantitatively.

Multi-hyperbolic sine-correlated beams and their statistical properties in turbulent atmosphere.

We introduce a partially coherent beam, called a multi-hyperbolic sine-correlated (MHSC) beam, by employing a multi-hyperbolic sine function to modulate the spectral degree of coherence. Based on the extended Huygens-Fresnel principle and second-order moments of the Wigner distribution function, we derive the analytical expressions for the spectral intensity, the root-mean-square (rms) angular width and the M2 factor in turbulent atmosphere. Numerical results show that the intensity profile, which keeps the dark-hollow invariant in free space, will be gradually destroyed by the turbulence along the propagation distance. We believe that the MHSC beams have significant advantage over the hyperbolic sine-correlated beams for reducing the turbulence-induced degradation, especially for the MHSC beams with a higher beam order N. The effects of the beams parameters and the turbulent atmosphere on the beam quality are analyzed in detail.

Comprehensive assessment of flocculation conditioning of dredged sediment using organic polymers: Dredged sediment dewaterability and release of pollutants.

Dredged sediment contains various contaminants that are released during the process of dewatering and subsequent utilization. In this study, two organic polymers-chitosan (CS) and cationic polyacrylamide (CPAM) both in samples of varying molecular weights (MWs)-were used as flocculants to improve dewatering and rheological behaviors of dredged sediment, and floc properties were characterized to unravel the mechanisms of flocculation treatment. Moreover, pollutant transfer and release in the flocculation-dewatering process was investigated. Compared to CPAM, CS had better performance in dredged sediment dewatering, and more compact flocs were produced after treatment. The flocculated sediment belonged to the type of yield dilatant fluid and showed good shear resistance. Three-dimensional excitation-emission matrix spectroscopy and PARAFAC showed that protein-like substances were removed after treatment. The MW of CS had insignificant effects on flocculation performance, whereas CPAM removal efficiency for protein-like substances was increased at higher MWs, which may be related to the adsorption bridging effect of CPAM polymer chains. There were significant correlations between the dewatering performance of sediments, MW distribution of organics and rheological properties. CS and CPAM treatments caused the transformation of Fe/Al-P into CaP, which could reduce phosphorus release and its ecological risk. The flocculants contributed to the formation of carbonate-bound forms of As, Cr, Pb, and Ni. Ecological risk assessment results of the geo-accumulation index showed that medium- and low-MW CS reduced risk of sediment contamination, whereas CPAM and high-MW CS increased the ecological risk. CS had a greater effect on the release of VOCs than CPAM, with an increased release of total VOCs at higher flocculant MWs. The study was helpful to understand the dewatering mechanism of dredged sediment and provided a new strategy for pollution release management in sediment dewatering.

Extensive chromosomal rearrangements and rapid evolution of novel effector superfamilies contribute to host adaptation and speciation in the basal ascomycetous fungi.

The basal ascomycetes in genus Taphrina have strict host specificity and coevolution with their host plants, making them appealing models for studying the genomic basis of ecological divergence and host adaption. We therefore performed genome sequencing and comparative genomics of different Taphrina species with distinct host ranges to reveal their evolution. We identified frequent chromosomal rearrangements and highly dynamic lineage-specific (LS) genomic regions in Taphrina genomes. The LS regions occur at the flanking regions of chromosomal breakpoints, and are greatly enriched for DNA repeats, non-core genes, and in planta up-regulated genes. Furthermore, we identified hundreds of candidate secreted effector proteins (CSEPs) that are commonly organized in gene clusters that form distinct AT-rich isochore-like regions. Nearly half of the CSEPs constitute two novel superfamilies with modular structures unique to Taphrina. These CSEPs are commonly up-regulated during infection, enriched in the LS regions, evolved faster, and underwent extensive gene gain and loss in different species. In addition to displaying signatures of positive selection, functional characterization of selected CSEP genes confirmed their roles in suppression of plant defence responses. Overall, our results showed that extensive chromosomal rearrangements and rapidly evolving CSEP superfamilies play important roles in speciation and host adaptation in the early-branching ascomycetous fungi.