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1.
Sci Rep ; 8(1): 4402, 2018 03 13.
Article En | MEDLINE | ID: mdl-29535356

Lignocellulosic biomass (LCB) is a low-cost and abundant source of fermentable sugars. Enzymatic hydrolysis is one of the main ways to obtain sugars from biomass, but most of the polysaccharide-degrading enzymes are poorly efficient on LCB and cellulases with higher performances are required. In this study, we designed a chimeric protein by adding the carbohydrate binding module (CBM) of the cellulosomal enzyme CtLic26A-Cel5E (endoglucanase H or CelH) from Clostridium (Ruminiclostridium) thermocellum to the C-terminus of Dtur CelA, an interesting hyperthermostable endoglucanase from Dictyoglomus turgidum. The activity and binding rate of both native and chimeric enzyme were evaluated on soluble and insoluble polysaccharides. The addition of a CBM resulted in a cellulase with enhanced stability at extreme pHs, higher affinity and activity on insoluble cellulose.


Carbohydrate Metabolism , Cellulase/genetics , Cellulase/metabolism , Clostridium thermocellum/genetics , Clostridium thermocellum/metabolism , Amino Acid Sequence , Base Sequence , Cellulase/isolation & purification , Enzyme Activation , Gene Expression , Genetic Engineering , Hydrogen-Ion Concentration , Kinetics , Recombinant Fusion Proteins , Solubility , Temperature
2.
J Biotechnol ; 270: 21-29, 2018 Mar 20.
Article En | MEDLINE | ID: mdl-29409863

Lignocellulose degradation is a challenging step for value added products and biofuels production. Cellulomonas fimi secretes complex mixtures of carbohydrate active enzymes (CAZymes) which synergistically degrade cellulose and hemicelluloses. Their characterization may provide new insights for enzymatic cocktails implementation. Bioinformatic analysis highlighted 1127 secreted proteins, constituting the in silico secretome, graphically represented in a 2DE map. According to Blast2GO functional annotation, many of these are involved in carbohydrates metabolism. In vivo secretomes were obtained, growing C. fimi on glucose, CMC or wheat straw for 24 h. Zymography revealed degradative activity on carbohydrates and proteomic analysis identified some CAZymes, only in secretomes obtained with CMC and wheat straw. An interaction between cellobiohydrolases is proposed as a strategy adopted by soluble multimodular cellulases. Such approach can be crucial for a better characterization and industrial exploitation of the synergism among C. fimi enzymes.


Cellulomonas/growth & development , Enzymes/metabolism , Lignin/chemistry , Bacterial Proteins/metabolism , Carbohydrate Metabolism , Cellulomonas/enzymology , Cellulomonas/metabolism , Cellulose 1,4-beta-Cellobiosidase/metabolism , Computer Simulation , Protein Interaction Maps , Proteomics , Triticum/chemistry
3.
Ital J Pediatr ; 42: 36, 2016 Apr 07.
Article En | MEDLINE | ID: mdl-27056486

BACKGROUND: The most widespread method for the treatment of donor milk is the Holder pasteurization (HoP). The available literature data show that HoP may cause degradation of some bioactive components. The aim of this study was to determine the effect of HoP on the protein profile of human milk (HM) using a GeLC-MS method, a proteomic approach and a promising technique able to offer a qualitative HM protein profile. METHODS: HM samples were collected by standardized methods from 20 mothers carrying both preterm and term newborns. A aliquot of each sample was immediately frozen at -80 °C, whilst another one was Holder pasteurized and then frozen. All samples were then analyzed by GeLC-MS. The protein bands of interest were excised from the gel, digested with trypsin and identified by nano-HPLC-MS/MS analysis. RESULTS: The protein profile before and after HoP showed qualitative differences only in 6 samples out of 20, while in the remaining 14 no detectable differences were found. The differences interested only colostrums and transitional milk samples and regarded the decrease of the electrophoretic bands corresponding to alpha and beta-casein, tenascin, lactoferrin and immunoglobulin. CONCLUSIONS: In the majority of samples, HoP did not cause any modification, thereby preserving the biological activity of HM proteins.


Milk Proteins/analysis , Milk, Human/chemistry , Pasteurization/methods , Electrophoresis, Polyacrylamide Gel , Female , Humans , Mass Spectrometry
4.
Oncoimmunology ; 4(12): e1052353, 2015 Dec.
Article En | MEDLINE | ID: mdl-26587323

In this study we characterize a new mechanism by which Natural Killer (NK) cells may amplify their recruitment to tumors. We show that NK cells, upon interaction with melanoma cells, can release a chemotactic form of High Mobility Group Box-1 (HMGB1) protein capable of attracting additional activated NK cells. We first demonstrate that the engagement of different activating NK cell receptors, including those mainly involved in tumor cell recognition can induce the active release of HMGB1. Then we show that during NK-mediated tumor cell killing two HMGB1 forms are released, each displaying a specific electrophoretic mobility possibly corresponding to a different redox status. By the comparison of normal and perforin-defective NK cells (which are unable to kill target cells) we demonstrate that, in NK/melanoma cell co-cultures, NK cells specifically release an HMGB1 form that acts as chemoattractant, while dying tumor cells passively release a non-chemotactic HMGB1. Finally, we show that Receptor for Advanced Glycation End products is expressed by NK cells and mediates HMGB1-induced NK cell chemotaxis. Proteomic analysis of NK cells exposed to recombinant HMGB1 revealed that this molecule, besides inducing immediate chemotaxis, also promotes changes in the expression of proteins involved in the regulation of the cytoskeletal network. Importantly, these modifications could be associated with an increased motility of NK cells. Thus, our findings allow the definition of a previously unidentified mechanism used by NK cells to amplify their response to tumors, and provide additional clues for the emerging role of HMGB1 in immunomodulation and tumor immunity.

5.
Mol Biosyst ; 8(4): 967-74, 2012 Apr.
Article En | MEDLINE | ID: mdl-22193558

Upon combining bidimensional electrophoresis with monodimensional separation, a more comprehensive analysis of the milk fat globule membrane has been obtained. The proteomic profile of caprine milk fat globules revealed the presence of butyrophilin, lactadherin and perilipin as the major proteins, they were also associated to bovine and human milk fat globule membranes. Xanthine dehydrogenase/oxidase has been detected only in monodimensional gels. Biological activity of milk fat globules has been evaluated in Caco2-cells, as a representative model of the intestinal barrier. The increase of cell viability was indicative of a potential nutraceutical role for the whole milk fat globule, suggesting a possible employment in milk formula preparation.


Glycolipids/chemistry , Glycoproteins/chemistry , Milk, Human/chemistry , Milk/chemistry , Proteome/chemistry , Proteomics/methods , Animals , Butyrophilins , Caco-2 Cells , Cattle , Cell Survival , Dietary Supplements , Goats , Humans , Lipid Droplets , Membrane Glycoproteins/analysis , Membrane Proteins/analysis , Milk Proteins/analysis , Xanthine Dehydrogenase/analysis , Xanthine Oxidase/analysis
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