Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA.

The stability of DNA duplex and triplex structures not only depends on molecular forces such as base pairing or tripling or electrostatic interactions but also is sensitive to its aqueous environment. This paper presents data on the melting of Escherichia coli and poly(dA).poly(dT) duplex DNA and on the poly(dT).poly(dA). poly(dT) triplex in a variety of media to assess the contributions from the osmotic status and salt content of the media. The effects of volume exclusion on the stability of the DNA structures are also studied. From thermal transition measurements in the presence of low-molecular weight osmotic stressors, the number of water molecules released upon melting is found to be four waters per base pair for duplex melting and one water for the conversion of triplex to single-strand and duplex. The effects of Na+ counterion binding are also determined in ethylene glycol solutions so that the variation of counterion binding with water activity is evaluated. The data show that there is a modest decrease in the extent of counterion binding for both duplex and triplex as water activity decreases. Finally, using larger polyethylene glycol cosolutes, the effects on melting of volume exclusion by the solutes are assessed, and the results correlated with simple geometric models for the excluded volume. These results point out that DNA stability is sensitive to important conditions in the environment of the duplex or triplex, and thus, conformation and reactivity can be influenced by these solution conditions.

Thermodynamics of transfer of cholesterol from gel to fluid phases of phospholipid bilayers.

The partitioning of cholesterol between gel and fluid phases of model membrane bilayers has been studied by differential scanning calorimetry. The partition coefficients and thermodynamics of transfer between phases of dimyristoyl-, dipalmitoyl-, distearoyl- and diarachidoylphosphatidylcholines were determined using a regular solution model for the partitioning process. The partition coefficient, which is the ratio of cholesterol in fluid to gel phase lipid, varies from 2.3 to 8.4 as the acyl chain length increases from the C14 to the C20 bilayer and determined at the phase transition temperature. The enthalpies of transfer increase from -46 to +32 kcal/mol as the chain length increases, and there is a compensating increase in the entropy of transfer. The results are interpreted in terms of a disruption of gel phase lipid by the cholesterol, which for the thinner bilayers is increased because the cholesterol molecule spans across the two leafs of the bilayer. At bilayer thicknesses between 18 and 19 carbons, the cholesterol can fit into one-half of the gel phase bilayer, and the enthalpy becomes positive, suggesting less disruption in the gel phase relative to the thinner bilayers. The data support the interpretation that cholesterol does mediate fluidity by acting to disrupt gel domains of lipid.

Thermodynamics of transfer of indocarbocyanines from gel to fluid phases of phospholipid bilayers.

Application of the regular solution model to thermal transition data obtained by differential scanning calorimetry has allowed the determination of partition coefficients, Kp, and the thermodynamics of transfer of a series of indocarbocyanine solutes between the gel and fluid phases of phospholipid bilayers. The indocarbocyanines with alkyl chain lengths of 12 to 22 carbons were partitioned between dipalmitoyl- and distearoylphosphatidylcholine phases at the transition temperatures of the gel-liquid-crystal phase transition. The results indicate that as the alkyl chain length of the solute nears that of the acyl chains of the bilayer lipid, the free energy of transfer from gel to fluid is least negative, and the enthalpy of transfer is most positive. There is almost complete entropy-enthalpy compensation in the transfer process. Comparison of the partition coefficients with published values determined by a fluorescence method show good agreement when the differences in temperature of the measurements are accounted for.

Micelle-vesicle transition in phospholipid-bile salt mixtures. A study by precision scanning calorimetry.

A systematic study of the micelle-vesicle transformation in phospholipid-bile salt mixtures using differential scanning calorimetry (DSC) indicates that the lipid undergoes a variety of changes in its thermal properties as mixed micellar solutions are diluted to concentrations at which vesicles form. In the experiments, micellar solutions of 50 mg/mL total lipid, containing sodium taurocholate (TC) and 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), are diluted to concentrations corresponding to differing extents of aggregation of the TC with phospholipid. Turbidity and equilibrium dialysis measurements are used to establish boundaries between where micelles persist and where vesicles are formed and to determine the extent of aggregation of the TC with DPPC. At molar ratios Re of bound TC to DPPC greater than 0.3, micellar solutions are formed, while at Re less than 0.15 vesicles are evident upon dilution. As the transformation from micelles to vesicles occurs, the thermal transitions in the lipid change from broad, low Cp (max) peaks in the micelle region to multiple peaks of high cooperativity in regions of composition where lamellar structures and vesicles form. The DSC curves show that in the composition region corresponding to where bilayer micelles exist a new thermal phase forms, which has a melting transition near 32 degrees C, if the solutions are allowed to equilibrate for 48 h at 21 degrees C. Furthermore, at compositions between Re = 0 and 0.25, there is metastability in the lipid when equilibrated at 21 degrees C, but heating the lipid through the thermal transitions leads to reversible behavior.(ABSTRACT TRUNCATED AT 250 WORDS)

Partitioning behavior of indocarbocyanine probes between coexisting gel and fluid phases in model membranes.

Gel-fluid partition coefficients, Kp, were measured for a series of indocarbocyanine dyes in multilamellar lipid vesicles. The dyes examined had alkyl chain lengths from 12 to 22 carbons. Fluorescence quenching by a spin-labeled phosphatidylcholine-enriched fluid phase created a large difference in quantum yield for indocarbocyanine fluorescence between fluid and gel phases, enabling reliable Kp determinations. The values range from Kp = 8 for the 12-carbon chain, favoring a fluid phase over a Ca2-phosphatidylserine rigid phase, to Kp = 0.02 for the 20-carbon chain dye, favoring a distearoylphosphatidylcholine-rich gel phase over the fluid phase.

Precision scanning calorimetry of bile salt-phosphatidylcholine micelles.

Precision scanning calorimetry has been used to examine the thermal behavior of mixed micelles formed between bile salts and dipalmitoylphosphatidylcholine (DPPC). Complex thermal transitions are observed which change dramatically with the mole ratio of bile salt to DPPC, dilution, and ionic strength. Comparison of the behavior of sodium taurocholate (TC) mixed micelles with sodium taurodeoxy-cholate (TDC) mixed micelles indicates similarity in the thermal transitions at high dilution or when the actual micellar composition is similar. It was found through equilibrium dialysis that considerably less TC than TDC is incorporated into mixed micelles with DPPC at a given bile salt concentration. Accounting for these concentration differences provides a means for more direct analysis of changes in the thermal transitions with mole ratio and dilution for the two bile salt components. Resolution of the thermal transitions into several component contributions is employed as an aid to interpretation of the differential scanning calorimetry curves. The curve resolutions lead to estimates of van't Hoff and calorimetric enthalpies of the individual contributions. The results of the curve resolutions, along with the behavior of the total enthalpies of the transitions, are consistent with a transformation in micellar structure occurring when the actual micellar composition is a mole ratio of bile salt to DPPC of about 1 to 1. The transformation region is near that found from X-ray evidence and is thought to correspond to a change from disk-shaped to spherical micelles.