Synthesis of Pyrazinopyrazine-Fused Azaacenes through Direct Condensation Reactions between Quinoxalinediamine and Diketones.

We report the synthesis of a new type of pyrazinopyrazine-fused azaacene molecules by a simple and versatile procedure. 6,9-Dihexyldithieno[3,2-f:2',3'-h]quinoxaline-2,3-diamine was synthesized through the condensation between 2,7-dihexylbenzo[1,2-b:6,5-b']dithiophene-4,5-diamine and bis(2,2,2-trifluoroethyl) oximidate. A series of derivatized molecules with extended two-dimensional aromatic fused-ring structures could be obtained by simple condensation reactions between the quinoxalinediamine intermediate and various diketones. The reaction was proved to be effective for the construction of tetrazaacene derivatives with extended heterocyclic aromatic ring systems. The molecules obtained exhibit low-lying LUMO levels that can be fine-tuned by modifying the molecular structure. Crystallographic results showed that in a solid state, the molecules form "brick wall" structures with a close π-π stacking mode. The stacking between the π-ring systems in the molecules could be further enhanced by expanding the large 2D planar-conjugated structure.

Binuclear (salen)osmium phosphinidine and phosphiniminato complexes.

The preparation of a number of binuclear (salen)osmium phosphinidine and phosphiniminato complexes using various strategies are described. Treatment of [Os(VI)(N)(L(1))(sol)](X) (sol = H(2)O or MeOH) with PPh(3) affords an osmium(IV) phosphinidine complex [Os(IV){N(H)PPh(3)}(L(1))(OMe)](X) (X = PF(6)1a, ClO(4)1b). If the reaction is carried out in CH(2)Cl(2) in the presence of excess pyrazine the osmium(III) phosphinidine species [Os(III){N(H)PPh(3)}(L(1))(pz)](PF(6)) 2 can be generated. On the other hand, if the reaction is carried out in CH(2)Cl(2) in the presence of a small amount of H(2)O, a µ-oxo osmium(IV) phosphinidine complex is obtained, [(L(1)){PPh(3)N(H)}Os(IV)-O-Os(IV){N(H)PPh(3)}(L(1))](PF(6))(2)3. Furthermore, if the reaction of [Os(VI)(N)(L(1))(OH(2))]PF(6) with PPh(3) is done in the presence of 2, the µ-pyrazine species, [(L(1)){PPh(3)N(H)}Os(III)-pz-Os(III){N(H)PPh(3)}(L(1))](PF(6))(2)4 can be isolated. Novel binuclear osmium(IV) complexes can be prepared by the use of a diphosphine ligand to attack two Os(VI)≡N. Reaction of [Os(VI)(N)(L(1))(OH(2))](PF(6)) with PPh(2)-C≡C-PPh(2) or PPh(2)-(CH(2))(3)-PPh(2) in MeOH affords the binuclear complexes [(MeO)(L(1))Os(IV){N(H)PPh(2)-R-PPh(2)N(H)}Os(IV)(L(1))(OMe)](PF(6))(2) (R = C≡C 5, (CH(2))(3)6). Reaction of [Os(VI)(N)(L(2))Cl] with PPh(2)FcPPh(2) generates a novel trimetallic complex, [Cl(L(2))Os(IV){NPPh(2)-Fc-PPh(2)N}Os(IV)(L(2))Cl] 7. The structures of 1b, 2, 3, 4, 5 and 7 have been determined by X-ray crystallography.

One-dimensional ferromagnetically coupled bimetallic chains constructed with trans-[Ru(acac)2(CN)2]-: syntheses, structures, magnetic properties, and density functional theoretical study.

Four cyano-bridged 1D bimetallic polymers have been prepared by using the paramagnetic building block trans-[Ru(acac)(2)(CN)(2)](-) (Hacac=acetylacetone): {[{Ni(tren)}{Ru(acac)(2)(CN)(2)}][ClO(4)].CH(3)OH}(n) (1) (tren=tris(2-aminoethyl)amine), {[{Ni(cyclen)}{Ru(acac)(2)(CN)(2)}][ClO(4)].CH(3)OH}(n) (2) (cyclen=1,4,7,10-tetraazacyclododecane), {[{Fe(salen)}{Ru(acac)(2)(CN)(2)}]}(n) (3) (salen(2-)=N,N'-bis(salicylidene)-o-ethyldiamine dianion) and [{Mn(5,5'-Me(2)salen)}(2){Ru(acac)(2)(CN)(2)}][Ru(acac)(2)(CN)(2)].2CH(3)OH (4) (5,5'-Me(2)salen=N,N'-bis(5,5'-dimethylsalicylidene)-o-ethylenediimine). Compounds 1 and 2 are 1D, zigzagged NiRu chains that exhibit ferromagnetic coupling between Ni(II) and Ru(III) ions through cyano bridges with J=+1.92 cm(-1), zJ'=-1.37 cm(-1), g=2.20 for 1 and J=+0.85 cm(-1), zJ'=-0.16 cm(-1), g=2.24 for 2. Compound 3 has a 1D linear chain structure that exhibits intrachain ferromagnetic coupling (J=+0.62 cm(-1), zJ'=-0.09 cm(-1), g=2.08), but antiferromagnetic coupling occurs between FeRu chains, leading to metamagnetic behavior with T(N)=2.6 K. In compound 4, two Mn(III) ions are coordinated to trans-[Ru(acac)(2)(CN)(2)](-) to form trinuclear Mn(2)Ru units, which are linked together by pi-pi stacking and weak Mn...O* interactions to form a 1D chain. Compound 4 shows slow magnetic relaxation below 3.0 K with phi=0.25, characteristic of superparamagnetic behavior. The Mn(III)...Ru(III) coupling constant (through cyano bridges) and the Mn(III)...Mn(III) coupling constant (between the trimers) are +0.87 and +0.24 cm(-1), respectively. Compound 4 is a novel single-chain magnet built from Mn(2)Ru trimers through noncovalent interactions. Density functional theory (DFT) combined with the broken symmetry state method was used to calculate the molecular magnetic orbitals and the magnetic exchange interactions between Ru(III) and M (M=Ni(II), Fe(III), and Mn(III)) ions. To explain the somewhat unexpected ferromagnetic coupling between low-spin Ru(III) and high-spin Fe(III) and Mn(III) ions in compounds 3 and 4, respectively, it is proposed that apart from the relative symmetries, the relative energies of the magnetic orbitals may also be important in determining the overall magnetic coupling in these bimetallic assemblies.

2D LnIII RuIII 2 compounds constructed from trans-[Ru(acac)2(CN)2]-. Syntheses, structures, and magnetic properties.

A series of cyano-bridged Ln(III)Ru(III)2 coordination polymers, Ph4P{Ln(NO3)2[Ru(acac)2(CN)2]2} [Ln = Tb (1), Dy (2), Er (3), Gd (4); Hacac = acetylacetone] have been synthesized by the reaction of Ln(NO3)3 with trans-Ph4P[Ru(acac)2(CN)2] in methanol. X-ray crystallographic determination reveals that these compounds are isostructural and have a wavy (4,4) layer structure with the Ln3+ ions bridged by trans-[Ru(acac)2(CN)2]-. Magnetic studies shows that the magnetic coupling between the Ln(III) and Ru(III) ions through the cyano bridges in 1-4 is negligibly weak.

Dominant spectral component analysis for transcriptional regulations using microarray time-series data.

MOTIVATION: Microarray time-series data provides us a possible means for identification of transcriptional regulation relationships among genes. Currently, the most commonly used method in determining whether or not two genes have a potential regulatory relationship is to measure their expressional similarity using Pearson's correlation coefficient. Although this traditional correlation method has been successfully applied to find functionally correlated genes, it does have many limitations. In the hope of overcoming such circumstances and getting more insights into the transcriptional regulatory issue, we propose an autoregressive (AR)-based technique for detection of potential regulated gene pairs from time-series microarray measurements. RESULTS: We use the well-known AR modeling technique to characterize temporal gene expression data from the Spellman's alpha-synchronized yeast cell-cycle experiment. In this method, time-series expression profiles are decomposed into spectral components and correlations between profiles are then computed in a component-wise sense. We show how these component-wise correlations reveal possible regulatory relationships. Our technique is applied on known transcriptional regulations and is able to identify many of those missed by the traditional correlation method.