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1.
Nature ; 615(7950): 127-133, 2023 03.
Article En | MEDLINE | ID: mdl-36813966

Haematopoietic stem cells (HSCs) are a rare cell type that reconstitute the entire blood and immune systems after transplantation and can be used as a curative cell therapy for a variety of haematological diseases1,2. However, the low number of HSCs in the body makes both biological analyses and clinical application difficult, and the limited extent to which human HSCs can be expanded ex vivo remains a substantial barrier to the wider and safer therapeutic use of HSC transplantation3. Although various reagents have been tested in attempts to stimulate the expansion of human HSCs, cytokines have long been thought to be essential for supporting HSCs ex vivo4. Here we report the establishment of a culture system that allows the long-term ex vivo expansion of human HSCs, achieved through the complete replacement of exogenous cytokines and albumin with chemical agonists and a caprolactam-based polymer. A phosphoinositide 3-kinase activator, in combination with a thrombopoietin-receptor agonist and the pyrimidoindole derivative UM171, were sufficient to stimulate the expansion of umbilical cord blood HSCs that are capable of serial engraftment in xenotransplantation assays. Ex vivo HSC expansion was further supported by split-clone transplantation assays and single-cell RNA-sequencing analysis. Our chemically defined expansion culture system will help to advance clinical HSC therapies.


Cell Culture Techniques , Cell Proliferation , Cytokines , Hematopoietic Stem Cells , Humans , Cell Proliferation/drug effects , Clone Cells/cytology , Clone Cells/drug effects , Clone Cells/metabolism , Fetal Blood/cytology , Hematopoietic Stem Cell Transplantation , Hematopoietic Stem Cells/cytology , Hematopoietic Stem Cells/drug effects , Hematopoietic Stem Cells/metabolism , Phosphatidylinositol 3-Kinases/metabolism , Cell Culture Techniques/methods , Albumins , Caprolactam , Polymers , Receptors, Thrombopoietin , Transplantation, Heterologous , Single-Cell Gene Expression Analysis
2.
Drug Discov Ther ; 15(2): 55-65, 2021 May 11.
Article En | MEDLINE | ID: mdl-33678755

Immature neurons undergo morphological and physiological maturation in order to establish neuronal networks. During neuronal maturation, a large number of genes change their transcriptional levels, and these changes may be mediated by chromatin modifiers. In this study, we found that the level of Ezh1, a component of Polycomb repressive complex 2 (PRC2), increases during neuronal maturation in mouse neocortical culture. In addition, conditional knockout of Ezh1 in post-mitotic excitatory neurons leads to downregulation of a set of genes related to neuronal maturation. Moreover, the locus encoding Cpg15/Neuritin (Nrn1), which is regulated by neuronal activity and implicated in stabilization and maturation of excitatory synapses, is a direct target of Ezh1 in cortical neurons. Together, these results suggest that elevated expression of Ezh1 contributes to maturation of cortical neurons.


Nerve Tissue Proteins/genetics , Neurons/metabolism , Polycomb Repressive Complex 2/metabolism , Alzheimer Disease/genetics , Alzheimer Disease/metabolism , Animals , Cerebral Cortex/cytology , Depression/genetics , Depression/metabolism , Down-Regulation , GPI-Linked Proteins/genetics , GPI-Linked Proteins/metabolism , Gene Expression Regulation/genetics , Mice , Mice, Inbred C57BL , Mice, Transgenic/genetics , Nerve Tissue Proteins/metabolism , Neuronal Plasticity/genetics , Neurons/physiology , Polycomb Repressive Complex 2/blood , Polycomb Repressive Complex 2/genetics
3.
Mol Autism ; 11(1): 68, 2020 09 01.
Article En | MEDLINE | ID: mdl-32873342

BACKGROUND: Several genetic alterations, including point mutations and copy number variations in NLGN genes, have been associated with psychiatric disorders, such as autism spectrum disorder (ASD) and X-linked mental retardation (XLMR). NLGN genes encode neuroligin (NL) proteins, which are adhesion molecules that are important for proper synaptic formation and maturation. Previously, we and others found that the expression level of murine NL1 is regulated by proteolytic processing in a synaptic activity-dependent manner. METHODS: In this study, we analyzed the effects of missense variants associated with ASD and XLMR on the metabolism and function of NL4X, a protein which is encoded by the NLGN4X gene and is expressed only in humans, using cultured cells, primary neurons from rodents, and human induced pluripotent stem cell-derived neurons. RESULTS: NL4X was found to undergo proteolytic processing in human neuronal cells. Almost all NL4X variants caused a substantial decrease in the levels of mature NL4X and its synaptogenic activity in a heterologous culture system. Intriguingly, the L593F variant of NL4X accelerated the proteolysis of mature NL4X proteins located on the cell surface. In contrast, other variants decreased the cell-surface trafficking of NL4X. Notably, protease inhibitors as well as chemical chaperones rescued the expression of mature NL4X. LIMITATIONS: Our study did not reveal whether these dysfunctional phenotypes occurred in individuals carrying NLGN4X variant. Moreover, though these pathological mechanisms could be exploited as potential drug targets for ASD, it remains unclear whether these compounds would have beneficial effects on ASD model animals and patients. CONCLUSIONS: These data suggest that reduced amounts of the functional NL4X protein on the cell surface is a common mechanism by which point mutants of the NL4X protein cause psychiatric disorders, although different molecular mechanisms are thought to be involved. Furthermore, these results highlight that the precision medicine approach based on genetic and cell biological analyses is important for the development of therapeutics for psychiatric disorders.


Autistic Disorder/genetics , Cell Adhesion Molecules, Neuronal/genetics , Mutation/genetics , Synapses/pathology , Amino Acid Sequence , Animals , Cell Adhesion Molecules, Neuronal/chemistry , Cell Adhesion Molecules, Neuronal/metabolism , Cell Membrane/metabolism , Cells, Cultured , Genetic Predisposition to Disease , HEK293 Cells , Humans , Induced Pluripotent Stem Cells/metabolism , Mental Retardation, X-Linked/genetics , Mice , Mutation, Missense/genetics , Neurons/metabolism , Organogenesis , Rats, Wistar
5.
Biochemistry ; 58(42): 4276-4283, 2019 10 22.
Article En | MEDLINE | ID: mdl-31568726

Photosynthetic water oxidation takes place at the Mn4CaO5 cluster in photosystem II via a light-driven cycle of intermediates called S states (S0-S4). Clarifying how electron and proton transfer reactions are coupled with each other in the S2 → S3 transition, which occurs just before O-O bond formation, is crucial for understanding the water oxidation mechanism. Here, we investigated the pH dependence of the kinetics of the S2 → S3 transition using time-resolved infrared (TRIR) spectroscopy to identify the proton release phase in this transition. TRIR measurements of YD-less PSII core complexes from the D2-Y160F mutant of Thermosynechococcus elongatus showed that the last phase in this transition (τ ∼ 350 µs at pH 6) was strongly dependent on pH, and its time constant at pH 5 was larger than that at pH 8 by a factor of >3. In contrast, the earlier phase with a time constant of ∼100 µs was virtually independent of pH. These results strongly support the view that proton release is a rate-limiting step of the proton-coupled electron transfer in the last phase of the S2 → S3 transition. This proton release enables electron transfer by removing an excessive positive charge from the catalytic center and hence decreasing its redox potential.


Cyanobacteria/chemistry , Photosystem II Protein Complex/chemistry , Protons , Spectrophotometry, Infrared/methods , Water/chemistry , Catalytic Domain , Electron Transport , Hydrogen Bonding , Hydrogen-Ion Concentration , Kinetics , Oxidation-Reduction/radiation effects , Photosystem II Protein Complex/isolation & purification , Thermosynechococcus
6.
Cell Struct Funct ; 43(1): 85-94, 2018.
Article En | MEDLINE | ID: mdl-29780042

It takes several months to form the 3-dimensional morphology of the human embryonic brain. Therefore, establishing a long-term culture method for neuronal tissues derived from human induced pluripotent stem (iPS) cells is very important for studying human brain development. However, it is difficult to keep primary neurons alive for more than 3 weeks in culture. Moreover, long-term adherent culture to maintain the morphology of telencephalic neuron aggregates induced from human iPS cells is also difficult. Although collagen gel has been widely used to support long-term culture of cells, it is not clear whether human iPS cell-derived neuron aggregates can be cultured for long periods on this substrate. In the present study, we differentiated human iPS cells to telencephalic neuron aggregates and examined long-term culture of these aggregates on collagen gel. The results indicated that these aggregates could be cultured for over 3 months by adhering tightly onto collagen gel. Furthermore, telencephalic neuronal precursors within these aggregates matured over time and formed layered structures. Thus, long-term culture of telencephalic neuron aggregates derived from human iPS cells on collagen gel would be useful for studying human cerebral cortex development.Key words: Induced pluripotent stem cell, forebrain neuron, collagen gel, long-term culture.


Collagen/chemistry , Induced Pluripotent Stem Cells/cytology , Neurons/cytology , Cell Culture Techniques , Cell Differentiation , Cells, Cultured , Gels/chemistry , Humans , Induced Pluripotent Stem Cells/metabolism , Microscopy, Fluorescence , Transcription Factors/metabolism
7.
ACS Omega ; 2(11): 7493-7505, 2017 Nov 30.
Article En | MEDLINE | ID: mdl-30023556

Numerous anti-mucin 1 (anti-MUC1) antibodies that recognize O-glycan core structures have already been developed. However, most of them show low specificities toward O-glycan structures and/or low affinity toward a monovalent epitope. In this study, using an MUC1 glycopeptide library, we established two novel anti-MUC1 monoclonal antibodies (1B2 and 12D10) with designed carbohydrate specificities. Compared with previously reported anti-MUC1 antibodies, 1B2 and 12D10 showed quite different features regarding their specificities, affinities, and reactivity profiles to various cell lines. Both antibodies recognized specific O-glycan structures at the PDT*R motif (the asterisk represents an O-glycosylation site). 1B2 recognized O-glycans with an unsubstituted O-6 position of the GalNAc residue (Tn, T, and 23ST), whereas 12D10 recognized Neu5Ac at the same position (STn, 26ST, and dST). Neither of them bound to glycopeptides with core 2 O-glycans that have GlcNAc at the O-6 position of the GalNAc residue. Furthermore, 1B2 and 12D10 showed a strong binding to not only native MUC1 but also 20-mer glycopeptide with a monovalent epitope. These anti-MUC1 antibodies should thus become powerful tools for biological studies on MUC1 O-glycan structures. Furthermore, the strategy of using glycopeptide libraries should enable the development of novel antibodies with predesigned O-glycan specificities.

8.
Biochem Biophys Res Commun ; 482(2): 202-207, 2017 Jan 08.
Article En | MEDLINE | ID: mdl-27836537

To evaluate the precise role of sphingomyelin synthase 2 (SMS2) in sphingomyelin (SM) metabolism and their anti-inflammatory properties, we analyzed species of major SM and ceramide (Cer) (18:1, 18:0 sphingoid backbone, C14 - C26 N-acyl part) in SMS2 knockout and wild-type mouse plasma and liver using HPLC-MS. SMS2 deficiency significantly decreased very long chain SM (SM (d18:1/22:0) and SM (d18:1/24:0 or d18:0/24:1)) and increased very long chain Cer (Cer (d18:1/24:0 or d18:0/24:1) and Cer (d18:1/24:1)), but not long chain SM (SM (d18:1/16:0), SM (d18:1/18:0 or d18:0/18:1) and SM (d18:1/18:1)) in plasma. To examine the effects of SM on inflammation, we studied the role of very long chain SM in macrophage activation. Addition of SM (d18:1/24:0) strongly upregulated several macrophage activation markers, SM (d18:1/6:0) and Cer (d18:1/24:0) however, did not. It was suggested that very long chain SM but not long chain SM were decreased in SMS2-deficient mice liver and plasma. And the exogenously added very long chain SM (d18:1/24:0) could activate macrophages directly, suggesting a novel role of plasma very long chain SM in modulating macrophage activation and resulting inflammation.


Inflammation Mediators/immunology , Inflammation/immunology , Macrophage Activation/immunology , Macrophages/immunology , Sphingomyelins/immunology , Transferases (Other Substituted Phosphate Groups)/immunology , Animals , Cells, Cultured , Immunologic Factors/immunology , Mice , Mice, Inbred C57BL , Mice, Knockout , Molecular Weight , Sphingomyelins/chemistry
9.
Bioorg Med Chem ; 23(22): 7234-9, 2015 Nov 15.
Article En | MEDLINE | ID: mdl-26602085

Pseudomonas aeruginosa is one of the most common and clinically important pathogens because of its resistance to a wide variety of antibiotics. A number of treatments of P. aeruginosa have been developed, but there is still no definitive one. Antisense drugs have a great potential to treat multidrug-resistant P. aeruginosa because this technology, in principle, can inhibit the expression of any essential genes. Nucleic Acid Ther.2012, 22, 323 reported that peptide nucleic acid (PNA) antisenses conjugated to the carrier peptide (RXR)4 and targeted to ftsZ and acpP (essential genes) had antibacterial activity in P. aeruginosa. However, growth inhibition was also found with peptide-PNA antisense conjugates of mismatched sequences (negative controls), and hence there remains a possibility for considerable enhancement of basal level activity due to the general toxicity. To assess the true potential of peptide-PNA conjugates, we measured sequence-dependent knockdown of the (RXR)4-PNA conjugates by using a scrambled sequence as a negative control. In addition, we evaluated (RXR)4-PNA antisenses against three other essential genes (lepB, lptD and mraY) and a non-essential gene (PA1303), and confirmed that multiple sequences targeting only the essential genes showed antimicrobial activity in P. aeruginosa PAO1 cells. We also conducted a rescue experiment and confirmed that the antimicrobial activity of anti-mraY antisenses was an on-target effect, not due to general toxicity. These findings indicate that the (RXR)4­PNA antisense should be a useful tool for target validation of a specific gene and could be a therapeutic platform capable of targeting a variety of genes in P. aeruginosa.


Anti-Bacterial Agents/chemistry , Bacterial Proteins/genetics , Oligonucleotides, Antisense/chemistry , Peptide Nucleic Acids/chemistry , Peptides/chemistry , Pseudomonas aeruginosa/genetics , Anti-Bacterial Agents/chemical synthesis , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/antagonists & inhibitors , Bacterial Proteins/metabolism , Cytoskeletal Proteins/antagonists & inhibitors , Cytoskeletal Proteins/genetics , Cytoskeletal Proteins/metabolism , Microbial Sensitivity Tests , Oligonucleotides, Antisense/chemical synthesis , Oligonucleotides, Antisense/pharmacology , Pseudomonas aeruginosa/drug effects
10.
Neurorehabil Neural Repair ; 29(1): 80-9, 2015 Jan.
Article En | MEDLINE | ID: mdl-24633139

Background. Transplantation of bone marrow stromal cells (BMSCs) may contribute to functional recovery after stroke. This study was designed to clarify their mechanisms, trophic effects of neurotrophic factors, and neural differentiation. Methods. Mouse neurons exposed to glutamate were cocultured with mouse BMSCs. Either neutralizing antibodies against brain-derived neurotrophic factor (BDNF) or nerve growth factor (NGF) or Trk inhibitor K252a was added to explore the mechanism of their protective effects. Fluorescence in situ hybridization (FISH) was used to assess BDNF or NGF mRNA expression in BMSCs. The mice were subjected to permanent focal ischemia, and 7 days later, either BMSCs or the vehicle was stereotactically transplanted into the ipsilateral striatum. The mouse brains were processed for FISH and immunostaining 2 or 4 weeks after transplantation. Results. BMSCs significantly ameliorated glutamate-induced neuronal death. Treatment with anti-BDNF antibody significantly reduced their protective effects. FISH analysis showed that the majority of BMSCs expressed BDNF and NGF mRNA in vitro. BMSC transplantation significantly improved the survival of neurons in peri-infarct areas. FISH analysis revealed that approximately half of BMSCs expressed BDNF and NGF mRNA 2 weeks after transplantation; however, the percentage of BDNF and NGF mRNA-positive cells decreased thereafter. Instead, the percentage of microtubule-associated protein 2-positive BMSCs gradually increased during 4 weeks after transplantation. Conclusions. These findings strongly suggest that BDNF may be a key factor underlying the trophic effects of BMSCs. BMSCs might exhibit the trophic effect in the early stage of cell therapy and the phenotypic change toward neural cells thereafter.


Brain-Derived Neurotrophic Factor/metabolism , Infarction, Middle Cerebral Artery/surgery , Mesenchymal Stem Cell Transplantation/methods , Mesenchymal Stem Cells/physiology , Nerve Growth Factor/metabolism , Phosphopyruvate Hydratase/metabolism , Animals , Brain-Derived Neurotrophic Factor/genetics , Cell Count , Cells, Cultured , Cerebral Cortex/cytology , Coculture Techniques , Disease Models, Animal , Embryo, Mammalian , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Imaging, Three-Dimensional , Male , Mice , Mice, Inbred BALB C , Mice, Transgenic , Microtubule-Associated Proteins/metabolism , Nerve Growth Factor/genetics , Neurons/metabolism , RNA, Messenger/metabolism
11.
ACS Med Chem Lett ; 5(5): 556-60, 2014 May 08.
Article En | MEDLINE | ID: mdl-24900879

It is urgent to develop novel anti-Pseudomonas agents that should also be active against multidrug resistant P. aeruginosa. Expanding the antibacterial spectrum of muraymycins toward P. aeruginosa was investigated by the systematic structure-activity relationship study. It was revealed that two functional groups, a lipophilic side chain and a guanidino group, at the accessory moiety of muraymycins were important for the anti-Pseudomonas activity, and analogue 29 exhibited antibacterial activity against a range of P. aeruginosa strains with the minimum inhibitory concentration values of 4-8 µg/mL.

12.
PLoS One ; 9(2): e89338, 2014.
Article En | MEDLINE | ID: mdl-24586699

OBJECTIVES: To investigate the effects of irbesartan on inflammation and apoptosis in atherosclerotic plaques by histochemical examination and molecular imaging using (14)C-FDG and (99m)Tc-annexin A5. BACKGROUND: Irbesartan has a peroxisome proliferator-activated receptor gamma (PPARγ) activation property in addition to its ability to block the AT1 receptor. Accordingly, irbesartan may exert further anti-inflammatory and anti-apoptotic effects in atherosclerotic plaques. However, such effects of irbesartan have not been fully investigated. Molecular imaging using (18)F-FDG and (99m)Tc-annexin A5 is useful for evaluating inflammation and apoptosis in atherosclerotic plaques. METHODS: Female apoE(-/-) mice were treated with irbesartan-mixed (50 mg/kg/day) or irbesartan-free (control) diet for 12 weeks (n = 11/group). One week after the treatment, the mice were co-injected with (14)C-FDG and (99m)Tc-annexin A5, and cryostat sections of the aortic root were prepared. Histochemical examination with Movat's pentachrome (plaque size), Oil Red O (lipid deposition), Mac-2 (macrophage infiltration), and TUNEL (apoptosis) stainings were performed. Dual-tracer autoradiography was carried out to evaluate the levels of (14)C-FDG and (99m)Tc-annexin A5 in plaques (%ID×kg). In vitro experiments were performed to investigate the mechanism underlying the effects. RESULTS: Histological examination indicated that irbesartan treatment significantly reduced plaque size (to 56.4%±11.1% of control), intra-plaque lipid deposition (53.6%±20.2%) and macrophage infiltration (61.9%±20.8%) levels, and the number of apoptotic cells (14.5%±16.6%). (14)C-FDG (43.0%±18.6%) and (99m)Tc-annexin A5 levels (45.9%±16.8%) were also significantly reduced by irbesartan treatment. Irbesartan significantly suppressed MCP-1 mRNA expression in TNF-α stimulated THP-1 monocytes (64.8%±8.4% of un-treated cells). PPARγ activation was observed in cells treated with irbesartan (134%±36% at 3 µM to 3329%±218% at 81 µM) by a PPARγ reporter assay system. CONCLUSIONS: Remissions of inflammation and apoptosis as potential therapeutic effects of irbesartan on atherosclerosis were observed. The usefulness of molecular imaging using (18)F-FDG and (99m)Tc-annexin A5 for evaluating the therapeutic effects of irbesartan on atherosclerosis was also suggested.


Apoptosis/drug effects , Biphenyl Compounds/pharmacology , Inflammation/drug therapy , Molecular Imaging/methods , Plaque, Atherosclerotic/drug therapy , Tetrazoles/pharmacology , Analysis of Variance , Animals , Annexin A5 , Apolipoproteins E/genetics , Autoradiography , Azo Compounds , Female , Histocytochemistry/methods , Image Processing, Computer-Assisted , In Situ Nick-End Labeling , Irbesartan , Mice , Mice, Knockout , Technetium
13.
Biochim Biophys Acta ; 1840(1): 645-55, 2014 Jan.
Article En | MEDLINE | ID: mdl-24161698

BACKGROUND: Osteoarthritis (OA) is one of the most common chronic diseases among adults, especially the elderly, which is characterized by destruction of the articular cartilage. Despite affecting more than 100 million individuals all over the world, therapy is currently limited to treating pain, which is a principal symptom of OA. New approaches to the treatment of OA that induce regeneration and repair of cartilage are strongly needed. METHODS: To discover potent markers for chondrogenic differentiation, glycoform-focused reverse proteomics and genomics were performed on the basis of glycoblotting-based comprehensive approach. RESULTS: Expression levels of high-mannose type N-glycans were up-regulated significantly at the late stage of differentiation of the mouse chondroprogenitor cells. Among 246 glycoproteins carrying this glycotype identified by ConA affinity chromatography and LC/MS, it was demonstrated that 52% are classified as cell surface glycoproteins. Gene expression levels indicated that mRNAs for 15 glycoproteins increased distinctly in the earlier stages during differentiation compared with Type II collagen. The feasibility of mouse chondrocyte markers in human chondrogenesis model was demonstrated by testing gene expression levels of these 15 glycoproteins during differentiation in human mesenchymal stem cells. CONCLUSION: The results showed clearly an evidence of up-regulation of 5 genes, ectonucleotide pyrophosphatase/phosphodiesterase family member 1, collagen alpha-1(III) chain, collagen alpha-1(XI) chain, aquaporin-1, and netrin receptor UNC5B, in the early stages of differentiation. GENERAL SIGNIFICANCE: These cell surface 5 glycoproteins become highly sensitive differentiation markers of human chondrocytes that contribute to regenerative therapies, and development of novel therapeutic reagents.


Antigens, Differentiation/metabolism , Chondrocytes/cytology , Chondrocytes/metabolism , Chondrogenesis/physiology , Genomics , Mesenchymal Stem Cells/cytology , Proteomics , Adult , Animals , Cell Differentiation , Cells, Cultured , Gene Expression Profiling , Glycoproteins/genetics , Glycoproteins/metabolism , Humans , Mesenchymal Stem Cells/metabolism , Mice , Oligonucleotide Array Sequence Analysis , Polysaccharides/metabolism , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction
14.
Bioorg Med Chem ; 21(21): 6506-22, 2013 Nov 01.
Article En | MEDLINE | ID: mdl-24051074

For further investigation of BACE1 inhibitors using conformational restriction with sp(3) hybridized carbon, we applied this approach to 6-substituted aminopyrimidone derivatives 3 to improve the inhibitory activity by reducing the entropic energy loss upon binding to BACE1. Among eight stereoisomers synthesized, [trans-(1'R,2'R),6S] isomer 6 exhibited the best BACE1 inhibitory activity, which was statistically superior to that of the corresponding ethylene linker compound (R)-3. Combinational examinations of the binding mode of 6 were performed, which included isothermal titration calorimetry (ITC), X-ray crystallographic structure analysis and theoretical calculations, to clarify the effect of our conformational restriction approach. From the ITC measurement, the binding entropy of 6 was found to be ∼0.5kcal larger than that of (R)-3, which is considered to be affected by conformational restriction with a cyclopropane ring.


Amyloid Precursor Protein Secretases/antagonists & inhibitors , Aspartic Acid Endopeptidases/antagonists & inhibitors , Models, Molecular , Protease Inhibitors/chemistry , Amides/chemical synthesis , Amides/chemistry , Amides/metabolism , Amyloid Precursor Protein Secretases/metabolism , Aspartic Acid Endopeptidases/metabolism , Binding Sites , Calorimetry , Crystallography, X-Ray , Humans , Molecular Conformation , Protease Inhibitors/chemical synthesis , Protease Inhibitors/metabolism , Protein Binding , Protein Structure, Tertiary , Stereoisomerism , Structure-Activity Relationship , Thermodynamics
15.
Bioorg Med Chem Lett ; 23(10): 2912-5, 2013 May 15.
Article En | MEDLINE | ID: mdl-23562056

To improve the efficacy of the conformationally restricted BACE1 inhibitors, structural modifications were investigated using two strategies: (a) modification of the terminal aromatic ring and (b) insertion of a spacer between the aromatic rings. In the latter approach, another type of inhibitor 17 bearing an ethylene spacer between two aromatic rings was found to exhibit good BACE1 inhibitory activity, while the corresponding conformationally unrestricted compound 25 showed no activity. This result revealed an interesting effect of a conformational restriction with a cyclopropane ring.


Amyloid Precursor Protein Secretases/antagonists & inhibitors , Aspartic Acid Endopeptidases/antagonists & inhibitors , Cyclopropanes/chemistry , Cytosine/analogs & derivatives , Enzyme Inhibitors/pharmacology , Amyloid Precursor Protein Secretases/metabolism , Aspartic Acid Endopeptidases/metabolism , Crystallography, X-Ray , Cytosine/chemical synthesis , Cytosine/chemistry , Cytosine/pharmacology , Dose-Response Relationship, Drug , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Humans , Models, Molecular , Molecular Conformation , Structure-Activity Relationship
16.
Acta Crystallogr D Biol Crystallogr ; 68(Pt 9): 1175-88, 2012 Sep.
Article En | MEDLINE | ID: mdl-22948918

FtsZ is a key molecule in bacterial cell division. In the presence of GTP, it polymerizes into tubulin-like protofilaments by head-to-tail association. Protofilaments of FtsZ seem to adopt a straight or a curved conformation in relation to the bound nucleotide. However, although several bacterial and archaeal FtsZ structures have been determined, all of the structures reported previously are considered to have a curved conformation. In this study, structures of FtsZ from Staphylococcus aureus (SaFtsZ) were determined in apo, GDP-bound and inhibitor-complex forms and it was found that SaFtsZ undergoes marked conformational changes. The accumulated evidence suggests that the GDP-bound structure has the features of the straight form. The structural change between the curved and straight forms shows intriguing similarity to the eukaryotic cytoskeletal protein tubulin. Furthermore, the structure of the apo form showed an unexpectedly large conformational change in the core region. FtsZ has also been recognized as a novel target for antibacterial drugs. The structure of the complex with the inhibitor PC190723, which has potent and selective antistaphylococcal activity, indicated that the inhibitor binds at the cleft between the two subdomains.


Bacterial Proteins/chemistry , Cytoskeletal Proteins/chemistry , Staphylococcus aureus/chemistry , Bacterial Proteins/metabolism , Cytoskeletal Proteins/metabolism , Guanosine Diphosphate/chemistry , Guanosine Diphosphate/metabolism , Models, Molecular , Protein Binding , Protein Folding , Protein Structure, Quaternary , Protein Structure, Tertiary , Staphylococcus aureus/metabolism , Structural Homology, Protein
17.
J Med Chem ; 55(20): 8838-58, 2012 Oct 25.
Article En | MEDLINE | ID: mdl-22998419

Improvement of a drug's binding activity using the conformational restriction approach with sp³ hybridized carbon is becoming a key strategy in drug discovery. We applied this approach to BACE1 inhibitors and designed four stereoisomeric cyclopropane compounds in which the ethylene linker of a known amidine-type inhibitor 2 was replaced with chiral cyclopropane rings. The synthesis and biologic evaluation of these compounds revealed that the cis-(1S,2R) isomer 6 exhibited the most potent BACE1 inhibitory activity among them. X-ray structure analysis of the complex of 6 and BACE1 revealed that its unique binding mode is due to the apparent CH-π interaction between the rigid cyclopropane ring and the Tyr71 side chain. A derivatization study using 6 as a lead molecule led to the development of highly potent inhibitors in which the structure-activity relationship as well as the binding mode of the compounds clearly differ from those of known amidine-type inhibitors.


Amyloid Precursor Protein Secretases/antagonists & inhibitors , Aspartic Acid Endopeptidases/antagonists & inhibitors , Cyclopropanes/chemical synthesis , Molecular Docking Simulation , Pyrimidines/chemical synthesis , Crystallography, X-Ray , Cyclopropanes/chemistry , Entropy , Enzyme-Linked Immunosorbent Assay , Fluorescence , Humans , Molecular Conformation , Protein Binding , Pyrimidines/chemistry , Stereoisomerism , Structure-Activity Relationship
18.
J Nucl Med ; 53(10): 1585-91, 2012 Oct.
Article En | MEDLINE | ID: mdl-22930815

UNLABELLED: Type 1 diabetes mellitus is characterized by a significant deficit in pancreatic ß-cell mass, presumably caused by ß-cell apoptosis. We investigated the incidence of ß-cell apoptosis in streptozotocin-treated mice and nonobese diabetic (NOD) mice with (99m)Tc-annexin A5. METHODS: Vehicle-treated mice, streptozotocin-treated mice, and NOD mice at the ages of 5, 9, 16, and 20 wk (5-8 mice per group) were injected with (99m)Tc-annexin A5 and sacrificed 6 h later for autoradiography, and the regional (99m)Tc-annexin A5 level in the pancreas was evaluated. Pancreatic islets were identified by insulin immunohistochemical staining, and apoptotic cells were determined by terminal deoxynucleotidyl transferase-mediated dUTP nick-end labeling (TUNEL) staining. The (99m)Tc-annexin A5 level in pancreatic islets was expressed as the percentage injected dose per area of pancreatic islets and normalized by animal body weight (%ID × 10(6)/mm(2)/kg). The level of apoptotic cells in pancreatic islets was expressed as the number of TUNEL-positive cells per area of pancreatic islets (cells/mm(2)). RESULTS: The (99m)Tc-annexin A5 accumulation level was significantly higher (2.5 ± 0.7 vs. 0.7 ± 0.1 %ID × 10(6)/mm(2)/kg, P < 0.05) and the number of TUNEL-positive cells was significantly higher (1,170 ± 535 vs. 5 ± 6 cells/mm(2), P < 0.05) in the pancreatic islets of the streptozotocin-treated mice than in those of the vehicle-treated mice. The (99m)Tc-annexin A5 accumulation level was significantly higher (1.1 ± 0.4 vs. 0.5 ± 0.1 %ID × 10(6)/mm(2)/kg, P < 0.05) and the number of TUNEL-positive cells was significantly higher (152 ± 82 vs. 4 ± 9 cells/mm(2), P < 0.05) in the pancreatic islets of 16-wk-old NOD mice than in those of 5-wk-old NOD mice. In addition, the level of (99m)Tc-annexin A5 correlated with the number of TUNEL-positive cells in the pancreatic islets of the streptozotocin-treated mice (r = 0.821, P < 0.001) and NOD mice (r = 0.721, P < 0.001). CONCLUSION: There is significant islet cell apoptosis with (99m)Tc-annexin A5 accumulation in the pancreas of both streptozotocin and NOD mice.


Apoptosis , Diabetes Mellitus, Type 1/pathology , Insulin-Secreting Cells/pathology , Animals , Annexin A5/metabolism , Autoradiography , Blood Glucose/metabolism , Body Weight , Diabetes Mellitus, Type 1/blood , Diabetes Mellitus, Type 1/diagnosis , Diabetes Mellitus, Type 1/metabolism , Disease Models, Animal , Feasibility Studies , Female , Humans , Insulin-Secreting Cells/metabolism , Male , Mice , Organotechnetium Compounds
19.
Bioorg Med Chem Lett ; 22(14): 4810-5, 2012 Jul 15.
Article En | MEDLINE | ID: mdl-22677318

The second-generation synthesis of 3'-hydroxypacidamycin D (2) has been accomplished via an Ugi-four component reaction at a late stage of the synthesis. This approach provided ready access to a range of analogues including diastereomers of the diaminobutylic acid residue and hybrid-type analogues of mureidomycins. Biological evaluations of these analogues indicated that the stereochemistry at the diaminobutylic acid residue has a crucial impact on both the MraY biochemical inhibition and whole-cell antibacterial activity.


Anti-Bacterial Agents/chemical synthesis , Oligopeptides/chemical synthesis , Pyrimidine Nucleosides/chemical synthesis , Aldehydes/chemistry , Anti-Bacterial Agents/pharmacology , Hydroxylation , Molecular Structure , Oligopeptides/pharmacology , Pseudomonas/drug effects , Pyrimidine Nucleosides/pharmacology , Structure-Activity Relationship
20.
Ann Nucl Med ; 26(2): 184-91, 2012 Feb.
Article En | MEDLINE | ID: mdl-22187312

OBJECTIVE: Glycosylation is generally applicable as a strategy for increasing the activity of bioactive proteins. In this study, we examined the effect of glycosylation on biodistribution of radiolabeled glucagon-like peptide 1 (GLP-1) as a bioactive peptide for type 2 diabetes. METHODS: Noninvasive imaging studies were performed using a gamma camera after the intravenous administration of (123)I-GLP-1 or (123)I-α2, 6-sialyl N-acetyllactosamine (glycosylated) GLP-1 in rats. In ex vivo biodistribution studies using (125)I-GLP-1 or (125)I-glycosylated GLP-1, organ samples were measured for radioactivity. Plasma samples were added to 15% trichloroacetic acid (TCA) to obtain TCA-insoluble and TCA-soluble fractions. The radioactivity in the TCA-insoluble and TCA-soluble fractions was measured. RESULTS: In the noninvasive imaging studies, a relatively high accumulation level of (123)I-GLP-1 was found in the liver, which is the major organ to eliminate exogenous GLP-1. The area under the time-activity curve (AUC) of (123)I-glycosylated GLP-1 in the liver was significantly lower (89%) than that of (123)I-GLP-1. These results were consistent with those of ex vivo biodistribution studies using (125)I-labeled peptides. The AUC of (125)I-glycosylated GLP-1 in the TCA-insoluble fraction was significantly higher (1.7-fold) than that of GLP-1. CONCLUSIONS: This study demonstrated that glycosylation significantly decreased the distribution of radiolabeled GLP-1 into the liver and increased the concentration of radiolabeled GLP-1 in plasma. These results suggested that glycosylation is a useful strategy for decreasing the distribution into the liver of bioactive peptides as desirable pharmaceuticals.


Glucagon-Like Peptide 1/chemistry , Glucagon-Like Peptide 1/metabolism , Iodine Radioisotopes/pharmacokinetics , Radiopharmaceuticals/pharmacokinetics , Amino Acid Sequence , Animals , Carbohydrate Sequence , Glucagon-Like Peptide 1/pharmacokinetics , Glycosylation , Liver/diagnostic imaging , Liver/metabolism , Male , Molecular Sequence Data , Radionuclide Imaging , Rats , Rats, Wistar , Tissue Distribution
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