Your browser doesn't support javascript.
loading
: 20 | 50 | 100
1 - 20 de 193
1.
Anal Chim Acta ; 1309: 342689, 2024 Jun 22.
Article En | MEDLINE | ID: mdl-38772669

BACKGROUND: Metabolomics plays a critical role in deciphering metabolic alterations within individuals, demanding the use of sophisticated analytical methodologies to navigate its intricate complexity. While many studies focus on single biofluid types, simultaneous analysis of multiple matrices enhances understanding of complex biological mechanisms. Consequently, the development of data fusion methods enabling multiblock analysis becomes essential for comprehensive insights into metabolic dynamics. RESULTS: This study introduces a novel guideline for jointly analyzing diverse metabolomic datasets (serum, urine, metadata) with a focus on metabolic differences between groups within a healthy cohort. The guideline presents two fusion strategies, 'Low-Level data fusion' (LLDF) and 'Mid-Level data fusion' (MLDF), employing a sequential application of Multivariate Curve Resolution with Alternating Least Squares (MCR-ALS), linking the outcomes of successive analyses. MCR-ALS is a versatile method for analyzing mixed data, adaptable at various stages of data processing-encompassing resonance integration, data compression, and exploratory analysis. The LLDF and MLDF strategies were applied to 1H NMR spectral data extracted from urine and serum samples, coupled with biochemical metadata sourced from 145 healthy volunteers. SIGNIFICANCE: Both methodologies effectively integrated and analysed multiblock datasets, unveiling the inherent data structure and variables associated with discernible factors among healthy cohorts. While both approaches successfully detected sex-related differences, the MLDF strategy uniquely revealed components linked to age. By applying this analysis, we aim to enhance the interpretation of intricate biological mechanisms and uncover variations that may not be easily discernible through individual data analysis.


Metabolomics , Humans , Metabolomics/methods , Male , Female , Multivariate Analysis , Healthy Volunteers , Adult , Proton Magnetic Resonance Spectroscopy , Cohort Studies , Middle Aged , Least-Squares Analysis , Young Adult
2.
Anal Bioanal Chem ; 415(25): 6213-6225, 2023 Oct.
Article En | MEDLINE | ID: mdl-37587312

Data-independent acquisition (DIA) mode in liquid chromatography (LC) high-resolution mass spectrometry (HRMS) has emerged as a powerful strategy in untargeted metabolomics for detecting a broad range of metabolites. However, the use of this approach also represents a challenge in the analysis of the large datasets generated. The regions of interest (ROI) multivariate curve resolution (MCR) approach can help in the identification and characterization of unknown metabolites in their mixtures by linking their MS1 and MS2 DIA spectral signals. In this study, it is proposed for the first time the analysis of MS1 and MS2 DIA signals in positive and negative electrospray ionization modes simultaneously to increase the coverage of possible metabolites present in biological systems. In this work, this approach has been tested for the detection and identification of the amino acids present in a standard mixture solution and in fish embryo samples. The ROIMCR analysis allowed for the identification of all amino acids present in the analyzed mixtures in both positive and negative modes. The methodology allowed for the direct linking and correspondence between the MS signals in their different acquisition modes. Overall, this approach confirmed the advantages and possibilities of performing the proposed ROIMCR simultaneous analysis of mass spectrometry signals in their differing acquisition modes in untargeted metabolomics studies.


Amines , Metabolomics , Animals , Mass Spectrometry/methods , Metabolomics/methods , Chromatography, Liquid/methods , Amino Acids
3.
Anal Chim Acta ; 1276: 341563, 2023 Oct 02.
Article En | MEDLINE | ID: mdl-37573101

Sulfamethoxazole (SMX) is one of the most widely used antibiotics worldwide and has been detected at high concentrations in wastewater treatment plant effluents and river waters. In this study, the SMX degradation process combining the simultaneous chlorine oxidation and UV photodegradation is assessed and compared with both photodegradation and chlorine oxidation processes individually. Photodegradation and Chlorine/UV tests were performed using Suntest CPS equipment. Different experimental techniques, including UV-Visible spectrophotometry and liquid chromatography coupled to a diode array detector and positive and negative ionization mass spectrometry (LC-DAD-MS-ESI(+)-ESI(-)), were used to evaluate the degradation reaction of SMX. All the analytical data generated have been processed with the Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS) method to monitor, resolve, and identify the several transformation products generated during the studied degradation processes. A new data fusion analysis strategy is proposed to examine the three processes simultaneously (with only photodegradation, only chlorination, and simultaneous chlorination+photodegradation). Combined with the analysis of different analytical techniques individually (spectrophotometry, LC-DAD, and LC-MS), the fusion of all generated data improved the description of the degradation processes. Detection using DAD allowed a better correspondence among the species monitored spectrophotometrically (UV-Vis) with those analyzed chromatographically. On the other side, detection using MS in both positive and negative acquisition modes allowed resolving a larger number of chemical compounds (specially SMX degradation subproducts) that could not be detected by UV-Vis spectrometry. The results obtained permitted the comparison of the effects produced by the three different degradation processes.


Chemometrics , Sulfamethoxazole , Halogenation , Photolysis , Chlorine , Spectrophotometry/methods , Mass Spectrometry/methods , Chromatography, Liquid
4.
Metabolomics ; 19(8): 70, 2023 08 07.
Article En | MEDLINE | ID: mdl-37548829

INTRODUCTION: This study has investigated the temporal disruptive effects of tributyltin (TBT) on lipid homeostasis in Daphnia magna. To achieve this, the study used Liquid Chromatography-Mass Spectrometry (LC-MS) analysis to analyze biological samples of Daphnia magna treated with TBT over time. The resulting data sets were multivariate and three-way, and were modeled using bilinear and trilinear non-negative factor decomposition chemometric methods. These methods allowed for the identification of specific patterns in the data and provided insight into the effects of TBT on lipid homeostasis in Daphnia magna. OBJECTIVES: Investigation of how are the changes in the lipid concentrations of Daphnia magna pools when they were exposed with TBT and over time using non-targeted LC-MS and advanced chemometric analysis. METHODS: The simultaneous analysis of LC-MS data sets of Daphnia magna samples under different experimental conditions (TBT dose and time) were analyzed using the ROIMCR method, which allows the resolution of the elution and mass spectra profiles of a large number of endogenous lipids. Changes obtained in the peak areas of the elution profiles of these lipids caused by the dose of TBT treatment and the time after its exposure are analyzed by principal component analysis, multivariate curve resolution-alternative least square, two-way ANOVA and ANOVA-simultaneous component analysis. RESULTS: 87 lipids were identified. Some of these lipids are proposed as Daphnia magna lipidomic biomarkers of the effects produced by the two considered factors (time and dose) and by their interaction. A reproducible multiplicative effect between these two factors is confirmed and the optimal approach to model this dataset resulted to be the application of the trilinear factor decomposition model. CONCLUSION: The proposed non-targeted LC-MS lipidomics approach resulted to be a powerful tool to investigate the effects of the two factors on the Daphnia magna lipidome using chemometric methods based on bilinear and trilinear factor decomposition models, according to the type of interaction between the design factors.


Daphnia , Lipidomics , Animals , Chromatography, Liquid , Tandem Mass Spectrometry , Metabolomics/methods , Lipids/analysis
5.
MethodsX ; 10: 102199, 2023.
Article En | MEDLINE | ID: mdl-37424752

The Regions of Interest Multivariate curve Resolution (ROIMCR) methodology has gained significance for analyzing mass spectrometry data. The new SigSel package improves the ROIMCR methodology by providing a filtering step to reduce computational costs and to identify chemical compounds giving low-intensity signals. SigSel allows the visualization and assessment of ROIMCR results and filters out components resolved as interferences and background noise. This improves the analysis of complex mixtures and facilitates the identification of chemical compounds for statistical or chemometrics analysis. SigSel has been tested using metabolomics samples of mussels exposed to the sulfamethoxazole antibiotic. It begins by analyzing the data according to their charge state, eliminating signals considered background noise, and reducing the size of the datasets. In the ROIMCR analysis, the resolution of 30 ROIMCR components was achieved. After evaluating these components, 24 were ultimately selected explaining 99.05% of the total data variance. From ROIMCR results, chemical annotation is performed using different methods: •Generating a list of signals and reanalyzing them in a data-dependent analysis.•Comparing the ROIMCR resolved mass spectra to those stored in online repositories.•Searching MS signals of chemical compounds in the ROIMCR resolved spectra profiles.

6.
Anal Chem ; 95(19): 7519-7527, 2023 05 16.
Article En | MEDLINE | ID: mdl-37146285

New data-independent acquisition (DIA) modes coupled to chromatographic separations are opening new perspectives in the processing of massive mass spectrometric (MS) data using chemometric methods. In this work, the application of the regions of interest multivariate curve resolution (ROIMCR) method is shown for the simultaneous analysis of MS1 and MS2 DIA raw data obtained by liquid chromatography coupled to quadrupole-time-of-flight MS analysis. The ROIMCR method proposed in this work relies on the intrinsic bilinear structure of the MS1 and MS2 experimental data which allows us for the fast direct resolution of the elution and spectral profiles of all sample constituents giving measurable MS signals, without needing any further data pretreatment such as peak matching, alignment, or modeling. Compound annotation and identification can be achieved directly by the comparison of the ROIMCR-resolved MS1 and MS2 spectra with those from standards or from mass spectral libraries. ROIMCR elution profiles of the resolved components can be used to build calibration curves for the prediction of their concentrations in complex unknown samples. The application of the proposed procedure is shown for the analysis of mixtures of per- and polyfluoroalkyl substances in standard mixtures, spiked hen eggs, and gull egg samples, where these compounds tend to accumulate.


Chickens , Tandem Mass Spectrometry , Animals , Female , Tandem Mass Spectrometry/methods , Chromatography, Liquid/methods , Eggs , Chromatography, High Pressure Liquid/methods
7.
Proteomes ; 11(2)2023 Mar 23.
Article En | MEDLINE | ID: mdl-37092452

Although numerous studies support a dose-effect relationship between Endocrine disruptors (EDs) and the progression and malignancy of tumors, the impact of a chronic exposure to non-lethal concentrations of EDs in cancer remains unknown. More specifically, a number of studies have reported the impact of Aldrin on a variety of cancer types, including prostate cancer. In previous studies, we demonstrated the induction of the malignant phenotype in DU145 prostate cancer (PCa) cells after a chronic exposure to Aldrin (an ED). Proteins are pivotal in the regulation and control of a variety of cellular processes. However, the mechanisms responsible for the impact of ED on PCa and the role of proteins in this process are not yet well understood. Here, two complementary computational approaches have been employed to investigate the molecular processes underlying the acquisition of malignancy in prostate cancer. First, the metabolic reprogramming associated with the chronic exposure to Aldrin in DU145 cells was studied by integrating transcriptomics and metabolomics via constraint-based metabolic modeling. Second, gene set enrichment analysis was applied to determine (i) altered regulatory pathways and (ii) the correlation between changes in the transcriptomic profile of Aldrin-exposed cells and tumor progression in various types of cancer. Experimental validation confirmed predictions revealing a disruption in metabolic and regulatory pathways. This alteration results in the modification of protein levels crucial in regulating triacylglyceride/cholesterol, linked to the malignant phenotype observed in Aldrin-exposed cells.

8.
Mar Pollut Bull ; 186: 114393, 2023 Jan.
Article En | MEDLINE | ID: mdl-36463719

The impact of hazardous materials, such as Hg, on life is far from being understood and due to the high number of polluted sites it has generated great concern. A biochemical and lipidomic approach was used to assess the effects of Hg on the saltmarsh halophyte Halimione portulacoides. Plants were collected at two sites of a Hg contaminated saltmarsh. Hg accumulation and distribution in the plant, biochemical parameters (antioxidant and metabolic) and lipid profiles were determined and compared between plant organs and sites (s1 and s2). Hg did not induce antioxidant enzyme activity. Lipid profiles changed under Hg exposure, especially in leaves, decreasing the unsaturation level, the membrane fluidity and stability, and evidencing that membrane lipid remodeling influences plant tolerance to Hg. This knowledge can help select the most appropriate methodologies for the restoration of Hg polluted hotspots, curtailing a serious environmental problem threatening saltmarshes.


Amaranthaceae , Chenopodiaceae , Mercury , Mercury/metabolism , Antioxidants/metabolism , Amaranthaceae/metabolism , Lipidomics , Lipids
9.
Talanta ; 252: 123804, 2023 Jan 15.
Article En | MEDLINE | ID: mdl-35998445

In this work, the Regions of Interest-Multivariate Curve Resolution (ROIMCR) method is proposed for the analysis of non-target metabolomics data. Samples from marine mussels (Mytilus galloprovincialis) exposed to a sublethal concentration (10 µg/L) of sulfamethoxazole (SMX) during 4 days in different seasonal conditions (summer and winter) were analyzed by High-Performance Liquid Chromatography - High-Resolution Mass Spectrometry (HPLC-HRMS) to study the effect of their exposure to SMX and the different seasonal conditions. The Regions of Interest (ROI) procedure has been applied for data filtering, compression, preprocessing and storage steps. Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS) is then applied to the previously MS ROI preprocessed data sets to resolve the elution profiles and spectral fingerprints of the chemical constituents of the analyzed samples. The peak areas of the elution profiles of the chemical constituents resolved by the combined ROIMCR procedure were analyzed by Principal Component Analysis (PCA) and samples were clustered according to their experimental seasonal and SMX exposure. The effects of the two investigated factors and of their interaction on the concentrations of the metabolites were statistically assessed by ANOVA simultaneous component analysis (ASCA). Both types of analyses, PCA clustering and ASCA, confirmed that the seasonal conditions (summer versus winter) produced larger effects than those produced by the exposure to SMX and by the interaction of these two factors. The concentration changes of 16 identified endogenous metabolites were validated individually using a Wilcoxon statistical test, which confirmed the presence of significant disturbances in the levels of some of these metabolites (free fatty acids, amino acids and nucleic acids), and indicated the possible alteration of six different biological pathways, affected by the investigated seasonal and SMX exposure factors.


Mytilus , Animals , Sulfamethoxazole , Retrospective Studies , Chemometrics , Mass Spectrometry/methods , Metabolome
10.
Toxics ; 10(11)2022 Oct 22.
Article En | MEDLINE | ID: mdl-36355924

Air pollution constitutes an environmental problem that it is known to cause many serious adverse effects on the cardiovascular and respiratory systems. The chemical characterization of particulate matter (PM) is key for a better understanding of the associations between chemistry and toxicological effects. In this work, the chemical composition and biological effects of fifteen PM10 air filter samples from three air quality stations in Catalonia with contrasting air quality backgrounds were investigated. Three-dimensional (3D) lung cancer cell cultures were exposed to these sample extracts, and cytotoxicity, reactive oxygen species (ROS) induction, metabolomics, and lipidomics were explored. The factor analysis method Multivariate Curve Resolution-Alternating Least-Squares (MCR-ALS) was employed for an integrated interpretation of the associations between chemical composition and biological effects, which could be related to urban traffic emission, biomass burning smoke, and secondary aerosols. In this pilot study, a novel strategy combining new approach methodologies and chemometrics provided new insights into the biomolecular changes in lung cells associated with different sources of air pollution. This approach can be applied in further research on air pollution toxicity to improve our understanding of the causality between chemistry and its effects.

11.
Anal Chim Acta ; 1227: 340330, 2022 Sep 22.
Article En | MEDLINE | ID: mdl-36089301

In the present contribution, a new approach based on mutual information (MI) is proposed for exploring the independence of feasible solutions in two component systems. Investigating how independent are different feasible solutions can be a way to bridge the gap between independent component analysis (ICA) and multivariate curve resolution (MCR) approaches and, to the best of our knowledge, has not been investigated before. For this purpose, different chromatographic and hyperspectral imaging (HSI) datasets were simulated, considering different noise levels and different degrees of overlap for two-component systems. Feasible solutions were then calculated by both grid search (GS) and Lawton-Sylvester (LS) plots. MI map which is the plot of MI vs. rotation matrix elements was used to estimate the degree of independence between different solutions. Inspection of the results showed that the different solutions in the feasible bands correspond to different MI values and that those values are lower for spectral profiles (more independent) than for concentration profiles (more dependent) as expected from the duality concept and the opposite is true. In addition, component profiles are found near more dependent solutions for concentration profiles and near less dependent solutions for spectral profiles which is due to the fact that "independence" constraint was applied to the spectral profiles in ICA algorithms. The performance of three well-known ICA algorithms (mean-field independent component analysis (MF-ICA), mutual information-based least dependent component analysis (MILCA) and joint approximate diagonalization of eigenmatrices (JADE)) as well as MCR-alternating least squares (MCR-ALS) were investigated. MI maps showed that the solutions of MF-ICA and MCR-ALS are in the feasible bands but the MILCA and JADE solutions which are just based on the independence maximization are outside the MI maps.


Algorithms , Least-Squares Analysis , Rotation
12.
Talanta ; 247: 123586, 2022 Sep 01.
Article En | MEDLINE | ID: mdl-35671578

In this work, three chemometrics-based approaches are compared for quantification purposes when using two-dimensional liquid chromatography (LC×LC-MS), taking as a study case the quantification of amino acids in commercial drug mixtures. Although the approaches have been already used for one-dimensional gas or liquid chromatography, the main novelty of this work is the demonstration of their applicability to LC×LC-MS datasets. Besides, steps such as peak alignment and modelling, commonly applied in this type of data analysis, are not required with the approaches proposed here. In a first step, regions of interest (ROI) strategy is used for the spectral compression of the LC×LC-MS datasets. Then the first strategy consists of building a calibration curve from the areas obtained in this ROI compression step. Alternatively, the ROI intensity matrices can be used as input for a second analysis step employing the multivariate curve resolution alternating least squares (MCR-ALS) method. The main benefit of MCR-ALS is the resolution of elution and spectral profiles for each of the analytes in the mixture, even in the case of strong coelutions and high signal overlapping. Classical MCR-ALS based calibration curve from the peak areas resolved only applying non-negativity constraints (second strategy) is compared to the results obtained when an area correlation constraint is imposed during the ALS optimization (third strategy). All in all, similar quantification results were achieved by the three approaches but, especially in prediction studies, the more accurate quantification is obtained when the calibration curve is built from the peak areas obtained with MCR-ALS when the area correlation constraint is imposed.


Multivariate Analysis , Calibration , Chromatography, Liquid/methods , Least-Squares Analysis , Mass Spectrometry/methods
13.
Cells ; 11(9)2022 05 05.
Article En | MEDLINE | ID: mdl-35563861

Raman microspectroscopy is a label-free technique which is very suited for the investigation of pharmacokinetics of cellular uptake, mechanisms of interaction, and efficacies of drugs in vitro. However, the complexity of the spectra makes the identification of spectral patterns associated with the drug and subsequent cellular responses difficult. Indeed, multivariate methods that relate spectral features to the inoculation time do not normally take into account the kinetics involved, and important theoretical information which could assist in the elucidation of the relevant spectral signatures is excluded. Here, we propose the integration of kinetic equations in the modelling of drug uptake and subsequent cellular responses using Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS) and tailored kinetic constraints, based on a system of ordinary differential equations. Advantages of and challenges to the methodology were evaluated using simulated Raman spectral data sets and real Raman spectra acquired from A549 and Calu-1 human lung cells inoculated with doxorubicin, in vitro. The results suggest a dependency of the outcome on the system of equations used, and the importance of the temporal resolution of the data set to enable the use of complex equations. Nevertheless, the use of tailored kinetic constraints during MCR-ALS allowed a more comprehensive modelling of the system, enabling the elucidation of not only the time-dependent concentration profiles and spectral features of the drug binding and cellular responses, but also an accurate computation of the kinetic constants.


Spectrum Analysis, Raman , Humans , Kinetics , Least-Squares Analysis , Multivariate Analysis , Spectrum Analysis, Raman/methods
14.
Molecules ; 27(10)2022 May 20.
Article En | MEDLINE | ID: mdl-35630781

The use of chemometric methods based on the analysis of variances (ANOVA) allows evaluation of the statistical significance of the experimental factors used in a study. However, classical multivariate ANOVA (MANOVA) has a number of requirements that make it impractical for dealing with metabolomics data. For this reason, in recent years, different options have appeared that overcome these limitations. In this work, we evaluate the performance of three of these multivariate ANOVA-based methods (ANOVA simultaneous component analysis-ASCA, regularized MANOVA-rMANOVA, and Group-wise ANOVA-simultaneous component analysis-GASCA) in the framework of metabolomics studies. Our main goals are to compare these various ANOVA-based approaches and evaluate their performance on experimentally designed metabolomic studies to find the significant factors and identify the most relevant variables (potential markers) from the obtained results. Two experimental data sets were generated employing liquid chromatography coupled to mass spectrometry (LC-MS) with different complexity in the design to evaluate the performance of the statistical approaches. Results show that the three considered ANOVA-based methods have a similar performance in detecting statistically significant factors. However, relevant variables pointed by GASCA seem to be more reliable as there is a strong similarity with those variables detected by the widely used partial least squares discriminant analysis (PLS-DA) method.


Metabolomics , Analysis of Variance , Chromatography, Liquid/methods , Mass Spectrometry/methods , Metabolomics/methods , Multivariate Analysis
15.
Molecules ; 27(7)2022 Apr 05.
Article En | MEDLINE | ID: mdl-35408738

Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) can analyze three-way data under the assumption of a trilinear model using the trilinearity constraint. However, the rigid application of this constraint can produce unrealistic solutions in practice due to the inadequacy of the analyzed data to the characteristics and requirements of the trilinear model. Different methods for the relaxation of the trilinear model data requirements have been proposed, like in the PARAFAC2 and in the direct non-trilinear decomposition (DNTD) methods. In this work, the trilinearity constraint of MCR-ALS is adapted to different data scenarios where the profiles of all or some of the components of the system are shifted (not equally synchronized) or even change their shape among different slices in one of their data modes. This adaptation is especially useful in gas and liquid chromatography (GC and LC) and in Flow Injection Analysis (FIA) with multivariate spectroscopic detection. In a first data example, a synthetic LC-DAD dataset is built to investigate the possibilities of the proposed method to handle systematic changes (shifts) in the retention times of the elution profiles and the results are compared with those obtained using alternative methods like ATLD, PARAFAC, PARAFAC2 and DNTD. In a second data example, multiple wine samples were simultaneously analyzed by GC-MS where elution profiles presented large deviations (shifts) in their peak retention times, although they still preserve the same peak shape. Different modelling scenarios are tested and the results are also compared. Finally, in the third example, sample mixtures of acid compounds were analyzed by FIA under a pH gradient and monitored by UV spectroscopy and also examined by different chemometric methods using a different number of components. In this case, however, the departure of the trilinear model comes from the acid base speciation of the system depending on the pH more than from the shifting of the FIA diffusion profiles.


Least-Squares Analysis , Calibration , Gas Chromatography-Mass Spectrometry/methods , Multivariate Analysis , Spectrum Analysis
16.
J Chromatogr A ; 1668: 462907, 2022 Apr 12.
Article En | MEDLINE | ID: mdl-35276410

In this study, non-targeted gas chromatography-Orbitrap-mass spectrometry (GC-Orbitrap-MS) analysis of semi-volatile organic compounds (SVOCs) in indoor environmental dust samples is proposed. High-resolution mass spectrometry (HRMS) provides massive amounts of information-rich mass data which presents storage and processing challenges. Thus, a combination of the regions of interest (ROI) data filtering and mass compression method, together with the multivariate curve resolution-alternating least squares (MCR-ALS) data resolution method (which is called the ROIMCR procedure), is applied to solve huge data analysis challenges. The ROI method assures a significant reduction of the computer storage requirements of mass spectrometry data without any significant loss of spectral resolution nor of accuracy on m/z measures. On the other side, the MCR-ALS method allows the total resolution of the elution and spectral profiles of the different constituents present in the analyzed samples, not requiring their chromatographic peak alignment nor their chromatographic peak shape modelling using natural constraints like non-negativity. Since all the possible species are investigated by the ROIMCR method, it is a powerful tool for non-targeted analysis. In order to check that the sample constituents are correctly recovered and identified by the proposed ROIMCR procedure when is applied to non-targeted GC-Orbitrap-MS analysis, a set of lab-emulated dust samples at different concentration levels were qualitatively and quantitatively analyzed in detail. Then, to evaluate the performance of the proposed ROIMCR procedure, this method was applied to the same type of non-targeted GC-Orbitrap-MS analysis data of two real dust samples with unknown compositions. Many chemical compounds present in the lab-emulated dust samples were correctly identified and quantified in these dust samples. An additional number of extra chemical compounds were resolved in these real dust samples, whose identification as putative constituents of these samples is proposed. The ROIMCR procedure proposed in this work facilitates the simultaneous data processing of complex analytical samples and allows the detection and identification of possible extra sample constituents. As a final conclusion of this work, the combination of the GC-Orbitrap-MS and ROIMCR methods, is shown to be a reliable tool for the non-targeted qualitative and quantitative analysis of complex analytical and environmental samples.


Volatile Organic Compounds , Chemometrics , Dust , Gas Chromatography-Mass Spectrometry/methods , Mass Spectrometry
17.
Angew Chem Int Ed Engl ; 61(44): e201801134, 2022 11 02.
Article En | MEDLINE | ID: mdl-29569816

This Review summarizes how big (bio)chemical data (BBCD) can be analyzed with multivariate chemometric methods and highlights some of the important challenges faced by modern analytical researches. Here, the potential of chemometric methods to solve BBCD problems that are being encountered in chromatographic, spectroscopic and hyperspectral imaging measurements will be discussed, with an emphasis on their applications to omics sciences. In addition, insights and perspectives on how to address the analysis of BBCD are provided along with a discussion of the procedures necessary to obtain more reliable qualitative and quantitative results. In this Review, the importance of "big data" and of their relevance to (bio)chemistry are first discussed. Thereafter, analytical tools which can produce BBCD are presented as well as the theoretical background of chemometric methods and their limitations when they are applied to BBCD. Finally, the importance of chemometric methods for the analysis of BBCD in different chemical disciplines is highlighted with some examples. In this work, we have tried to cover many of the current applications of big data analysis in the (bio)chemistry field.


Chemometrics , Data Mining , Chromatography , Spectrum Analysis , Big Data
18.
Environ Sci Pollut Res Int ; 29(13): 18905-18922, 2022 Mar.
Article En | MEDLINE | ID: mdl-34705210

In this study, changes in air quality by NO2, O3, and PM10 in Barcelona metropolitan area and other parts of Catalonia during the COVID-19 lockdown with respect to pre-lockdown and to previous years (2018 and 2019) were evaluated. Selected air monitoring stations included 3 urban (Gràcia, Vall d'Hebron, and Granollers), 1 control site (Fabra Observatory), 1 semi-urban (Manlleu), and 3 rural (Begur, Bellver de Cerdanya, and Juneda). NO2 lockdown levels showed a diminution, which in relative terms was maximum in two rural stations (Bellver de Cerdanya, - 63% and Begur, - 61%), presumably due to lower emissions from the ceasing hotel and ski resort activities during eastern holidays. In absolute terms and from an epidemiologic perspective, decrease in NO2, also reinforced by the high amount of rainfall registered in April 2020, was more relevant in the urban stations around Barcelona. O3 levels increased in the transited urban stations (Gràcia, + 42%, and Granollers, + 64%) due to the lower titration effect by NOx. PM10 lockdown levels decreased, mostly in Gràcia, Vall d'Hebron, and Granollers (- 35, - 39%, and - 39%, respectively) due to traffic depletion (- 90% in Barcelona's transport). Correlation among mobility index in Barcelona (- 100% in retail and recreation) and contamination was positive for NO2 and PM10 and negative for O3 (P < 0.001). Satellite images evidenced two hotspots of NO2 in Spain (Madrid and Barcelona) in April 2018 and 2019 that disappeared in 2020. Overall, the benefits of lockdown on air quality in Catalonia were evidenced with NO2, O3 and PM10 levels below WHOAQG values in most of stations opposed to the excess registered in previous years.


Air Pollutants , Air Pollution , COVID-19 , Air Pollutants/analysis , Air Pollution/analysis , Communicable Disease Control , Environmental Monitoring , Humans , Nitrogen Dioxide/analysis , Particulate Matter/analysis , SARS-CoV-2 , Spain
19.
Sci Total Environ ; 806(Pt 4): 150923, 2022 Feb 01.
Article En | MEDLINE | ID: mdl-34653450

The application of the multivariate curve resolution method to the analysis of temporal and spatial data variability of hourly measured O3 and NO2 concentrations at nineteen air quality monitoring stations across Catalonia, Spain, during 2015 is shown. Data analyzed included ground-based experimental measurements and predicted concentrations by the CALIOPE air quality modelling system at three horizontal resolutions (Europe at 12 × 12 km2, Iberian Peninsula at 4 × 4 km2 and Catalonia at 1 × 1 km2). Results obtained in the analysis of these different data sets allowed a better understanding of O3 and NO2 concentration changes as a sum of a small number of different contributions related to daily sunlight radiation, seasonal dynamics, traffic emission patterns, and local station environments (urban, suburban and rural). The evaluation of O3 and NO2 concentrations predicted by the CALIOPE system revealed some differences among data sets at different spatial resolutions. NO2 predictions, showed in general a better performance than O3 predictions for the three model resolutions, specially at urban stations. Our results confirmed that the application of the trilinearity constraint during the multivariate curve resolution factor analysis decomposition of the analyzed data sets is a useful tool to facilitate the understanding of the resolved variability sources.


Air Pollutants , Air Pollution , Ozone , Air Pollutants/analysis , Air Pollution/analysis , Data Analysis , Environmental Monitoring , Nitrogen Dioxide/analysis , Ozone/analysis
20.
Talanta ; 239: 122953, 2022 Mar 01.
Article En | MEDLINE | ID: mdl-34954462

A workflow is proposed for the study of the photodegradation process of the sulfamethoxazole (SMX) based on the combination of different experimental techniques, including liquid chromatography, mass spectrometry, UV-Visible spectrophotometry, and the treatment of all the analytical data with advanced chemometric methods. SMX, which is one of the most widely used antibiotics worldwide and has been found at remarkable concentrations in various rivers and effluents over all Europe, was degraded in the laboratory under a controlled source of UV radiation, which simulates the environmental solar radiation (Suntest). Kinetic monitoring of the photodegradation process was performed using UV-Visible spectrophotometric measurements and by further Liquid Chromatography with Diode Array Detector and Mass Spectrometry analysis (LC-DAD-MS). Additionally, the acid-base properties were also investigated to see how the pH can affect the speciation of this substance during the photodegradation process. Based on the Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS) application, the proposed chemometric method coped with the large amounts of data generated by the different analytical techniques used to monitor the evolution of the photodegradation process. Their simultaneous analysis involved applying a data fusion strategy and an advanced MCR-ALS constrained analysis, which allowed and improved the description of the complete degradation process, detecting the different species of the reaction, and identifying the possible transformation products formed. A total number of six species were resolved in the degradation process of SMX. In addition to the initial SMX, a second species corresponded to a conformational isomer, and the other four species represented different photoproducts, which have also been identified. Furthermore, three different acid-base species of SMX were obtained, and their pKa values were estimated.


Chemometrics , Sulfamethoxazole , Chromatography, Liquid , Least-Squares Analysis , Multivariate Analysis , Photolysis
...