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1.
Front Public Health ; 11: 1236384, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37670831

RESUMEN

Free-ranging non-human primates (NHP) can live in anthropized areas or urban environments in close contact with human populations. This condition can enable the emergence and transmission of high-impact zoonotic pathogens. For the first time, we detected a coinfection of the yellow fever (YF) virus with Toxoplasma gondii in a free-ranging NHP in a highly urbanized area of a metropolis in Brazil. Specifically, we observed this coinfection in a black-tufted marmoset found dead and taken for a necropsy by the local health surveillance service. After conducting an epidemiological investigation, characterizing the pathological features, and performing molecular assays, we confirmed that the marmoset developed an acute fatal infection caused by T. gondii in coinfection with a new YF virus South American-1 sub-lineage. As a result, we have raised concerns about the public health implications of these findings and discussed the importance of diagnosis and surveillance of zoonotic agents in urbanized NHPs. As competent hosts of zoonotic diseases such as YF and environmental sentinels for toxoplasmosis, NHPs play a crucial role in the One Health framework to predict and prevent the emergence of dangerous human pathogens.


Asunto(s)
Coinfección , Toxoplasmosis , Animales , Humanos , Callithrix , Virus de la Fiebre Amarilla , Zoonosis
2.
Trop Anim Health Prod ; 53(1): 108, 2021 Jan 09.
Artículo en Inglés | MEDLINE | ID: mdl-33423082

RESUMEN

Cassava (Manihot esculenta Crantz) bagasse is the by-product from industry (BCI), generated during manufacturing of cassava flour; this material has significant amounts of carbohydrates consisting in a potential energy source for ruminants. We hypothesized that the inclusion of BCI in the diets may lead to fermentation parameters equivalent to those of conventional feedstuff such as tropical grasses or grains; therefore, we aimed to evaluate ruminal fermentation parameters of BCI in in vitro conditions. Three different substrates were prepared: 100% BCI (BCI diet), 100% tifton (Cynodon spp.) hay (CTL diet), and 50% tifton hay +50% BCI (THB diet). Ruminal fermentation parameters of these diets were evaluated in in vitro gas production assays. In a 24-h incubation, increased values for total gas production, organic matter degradability, and methane production were observed for BCId and THB as compared to CTL (p < 0.05), while neutral THB showed the highest value for neutral detergent fiber degradability (p < 0.05). Fermentation profile was evaluated in a 48-h assay: shorter lag time as well as increased gas production potential and fractional fermentation rate were observed for the BCId and THB as compared to CTL (p < 0.05). Our results suggested that by-product from cassava industry is a suitable feed for ruminant production, providing desirable in vitro ruminal fermentation performance and organic matter degradability.


Asunto(s)
Alimentación Animal , Fermentación , Manihot , Rumen/fisiología , Animales , Dieta/veterinaria , Fibras de la Dieta/metabolismo , Digestión , Rumiantes
3.
BMC Bioinformatics ; 21(Suppl 2): 80, 2020 Mar 11.
Artículo en Inglés | MEDLINE | ID: mdl-32164574

RESUMEN

BACKGROUND: Interactions between proteins and non-proteic small molecule ligands play important roles in the biological processes of living systems. Thus, the development of computational methods to support our understanding of the ligand-receptor recognition process is of fundamental importance since these methods are a major step towards ligand prediction, target identification, lead discovery, and more. This article presents visGReMLIN, a web server that couples a graph mining-based strategy to detect motifs at the protein-ligand interface with an interactive platform to visually explore and interpret these motifs in the context of protein-ligand interfaces. RESULTS: To illustrate the potential of visGReMLIN, we conducted two cases in which our strategy was compared with previous experimentally and computationally determined results. visGReMLIN allowed us to detect patterns previously documented in the literature in a totally visual manner. In addition, we found some motifs that we believe are relevant to protein-ligand interactions in the analyzed datasets. CONCLUSIONS: We aimed to build a visual analytics-oriented web server to detect and visualize common motifs at the protein-ligand interface. visGReMLIN motifs can support users in gaining insights on the key atoms/residues responsible for protein-ligand interactions in a dataset of complexes.


Asunto(s)
Ligandos , Proteínas/metabolismo , Interfaz Usuario-Computador , Humanos , Enlace de Hidrógeno , Interacciones Hidrofóbicas e Hidrofílicas , Unión Proteica , Proteínas/química
4.
BMC Bioinformatics ; 18(Suppl 10): 403, 2017 Sep 13.
Artículo en Inglés | MEDLINE | ID: mdl-28929973

RESUMEN

BACKGROUND: A huge amount of data about genomes and sequence variation is available and continues to grow on a large scale, which makes experimentally characterizing these mutations infeasible regarding disease association and effects on protein structure and function. Therefore, reliable computational approaches are needed to support the understanding of mutations and their impacts. Here, we present VERMONT 2.0, a visual interactive platform that combines sequence and structural parameters with interactive visualizations to make the impact of protein point mutations more understandable. RESULTS: We aimed to contribute a novel visual analytics oriented method to analyze and gain insight on the impact of protein point mutations. To assess the ability of VERMONT to do this, we visually examined a set of mutations that were experimentally characterized to determine if VERMONT could identify damaging mutations and why they can be considered so. CONCLUSIONS: VERMONT allowed us to understand mutations by interpreting position-specific structural and physicochemical properties. Additionally, we note some specific positions we believe have an impact on protein function/structure in the case of mutation.


Asunto(s)
Análisis Mutacional de ADN/métodos , Programas Informáticos , Secuencia de Aminoácidos , Secuencia Conservada/genética , Humanos , Interacciones Hidrofóbicas e Hidrofílicas , Mutación/genética , Polimorfismo de Nucleótido Simple/genética , Alineación de Secuencia , Proteína p53 Supresora de Tumor/química , Proteína p53 Supresora de Tumor/genética
5.
Oncogene ; 35(14): 1785-96, 2016 Apr 07.
Artículo en Inglés | MEDLINE | ID: mdl-26234676

RESUMEN

Accumulating evidence suggests that changes of the protein synthesis machinery alter translation of specific mRNAs and participate in malignant transformation. Here we show that protein kinase C α (PKCα) interacts with TRM61, the catalytic subunit of the TRM6/61 tRNA methyltransferase. The TRM6/61 complex is known to methylate the adenosine 58 of the initiator methionine tRNA (tRNAi(Met)), a nuclear post-transcriptional modification associated with the stabilization of this crucial component of the translation-initiation process. Depletion of TRM6/61 reduced proliferation and increased death of C6 glioma cells, effects that can be partially rescued by overexpression of tRNAi(Met). In contrast, elevated TRM6/61 expression regulated the translation of a subset of mRNAs encoding proteins involved in the tumorigenic process and increased the ability of C6 cells to form colonies in soft agar or spheres when grown in suspension. In TRM6/61/tRNAi(Met)-overexpressing cells, PKCα overexpression decreased tRNAi(Met) expression and both colony- and sphere-forming potentials. A concomitant increase in TRM6/TRM61 mRNA and tRNAi(Met) expression with decreased expression of PKCα mRNA was detected in highly aggressive glioblastoma multiforme as compared with Grade II/III glioblastomas, highlighting the clinical relevance of our findings. Altogether, we suggest that PKCα tightly controls TRM6/61 activity to prevent translation deregulation that would favor neoplastic development.


Asunto(s)
Biomarcadores de Tumor/biosíntesis , Glioblastoma/genética , Proteína Quinasa C-alfa/genética , ARNt Metiltransferasas/biosíntesis , Apoptosis/genética , Biomarcadores de Tumor/genética , Carcinogénesis/genética , Línea Celular Tumoral , Proliferación Celular/genética , Regulación Neoplásica de la Expresión Génica , Glioblastoma/patología , Humanos , Metionina/genética , Proteína Quinasa C-alfa/biosíntesis , ARN de Transferencia/genética , ARNt Metiltransferasas/genética
6.
Bioinform Biol Insights ; 7: 335-45, 2013.
Artículo en Inglés | MEDLINE | ID: mdl-24151425

RESUMEN

The purpose of this study was to investigate the balance between transfer ribonucleic acid (tRNA) supply and demand in retrovirus-infected cells, seeking the best targets for antiretroviral therapy based on the hypothetical tRNA Inhibition Therapy (TRIT). Codon usage and tRNA gene data were retrieved from public databases. Based on logistic principles, a therapeutic score (T-score) was calculated for all sense codons, in each retrovirus-host system. Codons that are critical for viral protein translation, but not as critical for the host, have the highest T-score values. Theoretically, inactivating the cognate tRNA species should imply a severe reduction of the elongation rate during viral mRNA translation. We developed a method to predict tRNA species critical for retroviral protein synthesis. Four of the best TRIT targets in HIV-1 and HIV-2 encode Large Hydrophobic Residues (LHR), which have a central role in protein folding. One of them, codon CUA, is also a TRIT target in both HTLV-1 and HTLV-2. Therefore, a drug designed for inactivating or reducing the cytoplasmatic concentration of tRNA species with anticodon TAG could attenuate significantly both HIV and HTLV protein synthesis rates. Inversely, replacing codons ending in UA by synonymous codons should increase the expression, which is relevant for DNA vaccine design.

7.
Ann Oncol ; 24(6): 1691-7, 2013 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23406731

RESUMEN

BACKGROUND: BRAF inhibitors are being developed for the treatment of metastatic melanoma harboring a V600E mutation. The use of vemurafenib significantly increases progression-free survival (PFS) and overall survival (OS) in this population of patients, but is associated with numerous adverse skin reactions. PATIENTS AND METHODS: We carried out a systematic dermatologic study of 42 patients treated with vemurafenib. We collected detailed dermatologic symptoms, photos and biopsy specimens of the skin lesions which enabled us to classify the side-effects. The management and evolution of the skin symptoms are also reported. RESULTS: All patients presented with at least one adverse skin reaction. The most common cutaneous side-effects consisted in verrucous papillomas (79%) and hand-foot skin reaction (60%). Other common cutaneous toxic effects were a diffuse hyperkeratotic perifollicular rash (55%), photosensitivity (52%) and alopecia (45%). Epidermoid cysts (33%) and eruptive nevi (10%) were also observed. Keratoacanthomas (KA) and squamous cell carcinoma (SCC) occurred in 14% and 26% of the patients, respectively. CONCLUSIONS: These cutaneous side-effects are cause of concern due to their intrinsic potential for malignancy or because of their impact on patients' quality of life. Management of this skin toxicity relies on symptomatic measures and sun photoprotection.


Asunto(s)
Indoles/administración & dosificación , Indoles/efectos adversos , Proteínas Proto-Oncogénicas B-raf/antagonistas & inhibidores , Neoplasias Cutáneas/tratamiento farmacológico , Piel/efectos de los fármacos , Piel/patología , Sulfonamidas/administración & dosificación , Sulfonamidas/efectos adversos , Adulto , Anciano , Anciano de 80 o más Años , Femenino , Estudios de Seguimiento , Humanos , Masculino , Persona de Mediana Edad , Estudios Prospectivos , Proteínas Proto-Oncogénicas B-raf/metabolismo , Piel/metabolismo , Enfermedades de la Piel/inducido químicamente , Enfermedades de la Piel/diagnóstico , Neoplasias Cutáneas/metabolismo , Neoplasias Cutáneas/patología , Vemurafenib
8.
Cell Death Differ ; 18(11): 1692-701, 2011 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-21527938

RESUMEN

Of critical importance in the stress response is the post-transcriptional control of the expression of important genes involved in the control of cell survival and apoptosis. Here we report that miR-19, an oncogenic component of the miR-17-92/Oncomir-1 microRNA polycistron, regulates the expression of Ras homolog B (RhoB) in keratinocytes upon exposure to ultraviolet (UV) radiation. Strikingly, we could not find any evidence for deregulated expression of miR-19 during UV treatment. However, we show that miR-19-mediated regulation of antiapoptotic RhoB expression requires the binding of human antigen R (HuR), an AU-rich element binding protein, to the 3'-untranslated region of the rhoB mRNA. We propose that the loss of the interdependent binding between HuR and miR-19 to the rhoB mRNA upon UV exposure relieves this mRNA from miR-19-dependent inhibition of translation and contributes to the apoptotic response.


Asunto(s)
Apoptosis/efectos de la radiación , Proteínas ELAV/metabolismo , MicroARNs/metabolismo , ARN Mensajero/metabolismo , Rayos Ultravioleta , Proteína de Unión al GTP rhoB/metabolismo , Regiones no Traducidas 3' , Sitios de Unión , Línea Celular , Proteínas ELAV/antagonistas & inhibidores , Proteínas ELAV/genética , Humanos , Luciferasas de Luciérnaga/genética , Luciferasas de Luciérnaga/metabolismo , Unión Proteica , Interferencia de ARN , ARN Interferente Pequeño/metabolismo , Proteína de Unión al GTP rhoB/genética
9.
Mol Pharmacol ; 67(6): 1829-33, 2005 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-15784845

RESUMEN

We describe the development of a cell system for in vivo screening of inhibitors of the mevalonate pathway. To this aim, we have constructed a bicistronic mRNA, transcribed from a constitutive cytomegalovirus promoter, containing the Renilla reniformis luciferase RNA open reading frame sequence as first cistron and the Firefly luciferase RNA sequence as a second cistron. The intercistronic space is made of the R17 binding sequence of the bacteriophage R17 protein. A chimeric protein able to bind to a specific sequence in the hairpin and to induce internal ribosome entry in the RNA switches on translation of the second cistron. This chimeric protein is made up of the bacteriophage RNA binding domain (R17) fused to the ribosome recruitment core of the eIF-4G1 eukaryotic translation initiation factor and to the CAAX box of H-Ras addressing the protein to the plasma membrane where it is not efficient. Internal ribosome entry upstream of the Firefly cistron is therefore under the dependence of the mevalonate pathway inhibitors. Indeed, products that are able to inhibit protein farnesylation rescue the cytoplasmic location of the R17-eIF-4G-CAAX protein, which once more becomes a translation factor for the expression of the second cistron. To exemplify the system, the present work checks the ability of various antiestrogens to interfere with the mevalonate pathway. It seems that pure antiestrogen, able to selectively bind the estrogen receptor, is unable to switch on the second Firefly cistron although selective antiestrogen-binding-site ligands are able to do so.


Asunto(s)
Regulación Enzimológica de la Expresión Génica/fisiología , Luciferasas/genética , Metionina/análogos & derivados , Prenilación de Proteína/genética , Relación Dosis-Respuesta a Droga , Inhibidores Enzimáticos/farmacología , Regulación Enzimológica de la Expresión Génica/efectos de los fármacos , Células HeLa , Humanos , Luciferasas/biosíntesis , Metionina/farmacología , Biosíntesis de Proteínas/efectos de los fármacos , Biosíntesis de Proteínas/fisiología , Prenilación de Proteína/efectos de los fármacos
10.
EMBO Rep ; 2(10): 893-8, 2001 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-11600453

RESUMEN

Studies on the control of eukaryotic translation initiation by a cap-independent recruitment of the 40S ribosomal subunit to internal messenger RNA sequences called internal ribosome entry sites (IRESs) have shown that these sequence elements are present in a growing list of viral and cellular RNAs. Here we discuss their prevalence, mechanisms whereby they may function and their uses in regulating gene expression.


Asunto(s)
Regulación de la Expresión Génica , Biosíntesis de Proteínas , ARN/metabolismo , Ribosomas/química , Ribosomas/fisiología , Regiones no Traducidas 5' , Animales , Diferenciación Celular , Humanos , Mitosis , Modelos Biológicos , ARN Mensajero/metabolismo , Ribosomas/metabolismo
11.
Genes Dev ; 14(4): 403-13, 2000 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-10691733

RESUMEN

Although it has been established that the processing factors involved in pre-mRNA splicing and 3'-end formation can influence each other positively, the molecular basis of this coupling interaction was not known. Stimulation of pre-mRNA splicing by an adjacent cis-linked cleavage and polyadenylation site in HeLa cell nuclear extract is shown to occur at an early step in splicing, the binding of U2AF 65 to the pyrimidine tract of the intron 3' splice site. The carboxyl terminus of poly(A) polymerase (PAP) previously has been implicated indirectly in the coupling process. We demonstrate that a fusion protein containing the 20 carboxy-terminal amino acids of PAP, when tethered downstream of an intron, increases splicing efficiency and, like the entire 3'-end formation machinery, stimulates U2AF 65 binding to the intron. The carboxy-terminal domain of PAP makes a direct and specific interaction with residues 17-47 of U2AF 65, implicating this interaction in the coupling of splicing and 3'-end formation.


Asunto(s)
Regiones no Traducidas 3'/metabolismo , Proteínas Nucleares , Polinucleotido Adenililtransferasa/metabolismo , Precursores del ARN/metabolismo , Procesamiento Postranscripcional del ARN/fisiología , Ribonucleoproteínas/metabolismo , Secuencia de Aminoácidos , Células HeLa/metabolismo , Humanos , Intrones , Sustancias Macromoleculares , Datos de Secuencia Molecular , Proteínas de Neoplasias/metabolismo , Unión Proteica , Empalme del ARN/fisiología , ARN Neoplásico/metabolismo , Secuencias Reguladoras de Ácidos Nucleicos , Ribonucleoproteínas Nucleares Pequeñas/metabolismo , Factor de Empalme U2AF
12.
RNA ; 6(2): 178-88, 2000 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-10688357

RESUMEN

The 3' ends of most eukaryotic pre-mRNAs are generated by 3' endonucleolytic cleavage and subsequent polyadenylation. 3'-end formation can be influenced positively or negatively by various factors. In particular, U1 snRNP acts as an inhibitor when bound to a 5' splice site located either upstream of the 3'-end formation signals of bovine papilloma virus (BPV) late transcripts or downstream of the 3'-end processing signals in the 5' LTR of the HIV-1 provirus. Previous work showed that in BPV it is not the first step, 3' cleavage, that is affected by U1 snRNP, but rather the second step, polyadenylation, that is inhibited. Since in HIV-1 the biological requirement is to produce transcripts that read through the 5' LTR cleavage site rather than being cleaved there, this mechanism seemed unlikely to apply. The obvious difference between the two examples was the relative orientation of the 3'-end formation signals and the U1 snRNP-binding site. In vitro assays were therefore used to assess the effect of U1 snRNP bound at various locations relative to a cleavage/polyadenylation site on the 3' cleavage reaction. U1 snRNP was found to inhibit cleavage when bound to a 5' splice site downstream of the cleavage/polyadenylation site, as in the HIV-1 LTR. U1 snRNP binding at this location was shown not to affect the recruitment of multiple cleavage/polyadenylation factors to the cleavage substrate, indicating that inhibition is unlikely to be due to steric hindrance. Interactions between U1A, U1 70K, and poly(A) polymerase, which mediate the effect of U1 snRNP on polyadenylation of other pre-mRNAs, were shown not to be required for cleavage inhibition. Therefore, U1 snRNP bound to a 5' splice site can inhibit cleavage and polyadenylation in two mechanistically different ways depending on whether the 5' splice site is located upstream or downstream of the cleavage site.


Asunto(s)
Precursores del ARN/metabolismo , Ribonucleoproteína Nuclear Pequeña U1/metabolismo , Animales , Secuencia de Bases , Sitios de Unión , Papillomavirus Bovino 1/genética , Papillomavirus Bovino 1/metabolismo , Bovinos , Duplicado del Terminal Largo de VIH , VIH-1/genética , VIH-1/metabolismo , Células HeLa , Humanos , Mutación , Polinucleotido Adenililtransferasa/metabolismo , Precursores del ARN/química , Precursores del ARN/genética , Procesamiento Postranscripcional del ARN , Empalme del ARN
13.
Mol Cell Biol ; 19(1): 505-14, 1999 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-9858574

RESUMEN

Four isoforms of human fibroblast growth factor 2 (FGF-2) result from alternative initiations of translation at three CUG start codons and one AUG start codon. Here we characterize a new 34-kDa FGF-2 isoform whose expression is initiated at a fifth initiation codon. This 34-kDa FGF-2 was identified in HeLa cells by using an N-terminal directed antibody. Its initiation codon was identified by site-directed mutagenesis as being a CUG codon located at 86 nucleotides (nt) from the FGF-2 mRNA 5' end. Both in vitro translation and COS-7 cell transfection using bicistronic RNAs demonstrated that the 34-kDa FGF-2 was exclusively expressed in a cap-dependent manner. This contrasted with the expression of the other FGF-2 isoforms of 18, 22, 22.5, and 24 kDa, which is controlled by an internal ribosome entry site (IRES). Strikingly, expression of the other FGF-2 isoforms became partly cap dependent in vitro in the presence of the 5,823-nt-long 3' untranslated region of FGF-2 mRNA. Thus, the FGF-2 mRNA can be translated both by cap-dependent and IRES-driven mechanisms, the balance between these two mechanisms modulating the ratio of the different FGF-2 isoforms. The function of the new FGF-2 was also investigated. We found that the 34-kDa FGF-2, in contrast to the other isoforms, permitted NIH 3T3 cell survival in low-serum conditions. A new arginine-rich nuclear localization sequence (NLS) in the N-terminal region of the 34-kDa FGF-2 was characterized and found to be similar to the NLS of human immunodeficiency virus type 1 Rev protein. These data suggest that the function of the 34-kDa FGF-2 is mediated by nuclear targets.


Asunto(s)
Codón Iniciador , Factor 2 de Crecimiento de Fibroblastos/biosíntesis , Caperuzas de ARN , Células 3T3 , Animales , Células COS , Supervivencia Celular , Factor 2 de Crecimiento de Fibroblastos/genética , Productos del Gen rev/genética , Células HeLa , Humanos , Ratones , Señales de Localización Nuclear , Iniciación de la Cadena Peptídica Traduccional , Biosíntesis de Proteínas , ARN Mensajero
14.
Genes Dev ; 11(6): 761-73, 1997 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-9087430

RESUMEN

Interactions required for inhibition of poly(A) polymerase (PAP) by the U1 snRNP-specific U1A protein, a reaction whose function is to autoregulate U1A protein production, are examined. PAP inhibition requires a substrate RNA to which at least two molecules of U1A protein can bind tightly, but we demonstrate that the secondary structure of the RNA is not highly constrained. A mutational analysis reveals that the carboxy-terminal 20 amino acids of PAP are essential for its inhibition by the U1A-RNA complex. Remarkably, transfer of these amino acids to yeast PAP, which is otherwise not affected by U1A protein, is sufficient to confer U1A-mediated inhibition onto the yeast enzyme. A glutathione S-transferase fusion protein containing only these 20 PAP residues can interact in vitro with an RNA-U1A protein complex containing two U1A molecules, but not with one containing a single U1A protein, explaining the requirement for two U1A-binding sites on the autoregulatory RNA element. A mutational analysis of the U1A protein demonstrates that amino acids 103-119 are required for PAP inhibition. A monomeric synthetic peptide consisting of the conserved U1A amino acids from this region has no detectable effect on PAP activity. However, the same U1A peptide, when conjugated to BSA, inhibits vertebrate PAP. In addition to this activity, the U1A peptide-BSA conjugate specifically uncouples splicing and 3'-end formation in vitro without affecting uncoupled splicing or 3'-end cleavage efficiencies. This suggests that the carboxy-terminal region of PAP with which it interacts is involved not only in U1A autoregulation but also in the coupling of splicing and 3'-end formation.


Asunto(s)
Polinucleotido Adenililtransferasa/metabolismo , Proteínas de Unión al ARN/metabolismo , Ribonucleoproteína Nuclear Pequeña U1/metabolismo , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Sitios de Unión/genética , Bovinos , Secuencia Conservada , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Homeostasis , Humanos , Datos de Secuencia Molecular , Conformación de Ácido Nucleico , Polinucleotido Adenililtransferasa/química , Polinucleotido Adenililtransferasa/genética , ARN/química , ARN/genética , ARN/metabolismo , Empalme del ARN , Proteínas de Unión al ARN/química , Proteínas de Unión al ARN/genética , Proteínas Recombinantes de Fusión/química , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Ribonucleoproteína Nuclear Pequeña U1/química , Ribonucleoproteína Nuclear Pequeña U1/genética , Especificidad de la Especie
15.
J Biol Chem ; 272(51): 32061-6, 1997 Dec 19.
Artículo en Inglés | MEDLINE | ID: mdl-9405401

RESUMEN

The human proto-oncogene c-myc encodes two proteins, c-Myc1 and c-Myc2, from two initiation codons, CUG and AUG, respectively. It is also transcribed from four alternative promoters (P0, P1, P2, and P3), giving rise to different RNA 5'-leader sequences, the long sizes of which suggest that they must be inefficiently translated by the classical ribosome scanning mechanism. Here we have examined the influence of three c-myc mRNA 5'-leaders on the translation of chimeric myc-CAT mRNAs. We observed that in the reticulocyte rabbit lysate, these 5'-leaders lead to cap-independent translation initiation. To determine whether this kind of initiation resulted from the presence of an internal ribosome entry site (IRES), COS-7 cells were transfected with bicistronic vectors containing the different c-myc 5'-leaders in the intercistronic region. An IRES was identified, requiring elements located within the P2 leader, between nucleotides -363 and -94 upstream from the CUG start codon. This is the first demonstration of the existence of IRES-dependent translation for a proto-oncogene. This IRES could be a translation enhancer, allowing activation of c-myc expression under the control of trans-acting factors and in response to specific cell stimuli.


Asunto(s)
Genes myc , Biosíntesis de Proteínas , Ribosomas/metabolismo , Animales , Secuencia de Bases , Células COS , Cloranfenicol O-Acetiltransferasa/genética , Codón , Humanos , Datos de Secuencia Molecular , Conformación de Ácido Nucleico , Regiones Promotoras Genéticas , Proto-Oncogenes Mas , Caperuzas de ARN , ARN Mensajero/química , ARN Mensajero/genética , Proteínas Recombinantes de Fusión/genética , Homología de Secuencia de Ácido Nucleico , Células Tumorales Cultivadas
16.
J Cell Biol ; 135(5): 1391-402, 1996 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-8947560

RESUMEN

Four isoforms of the human fibroblast growth factor 2 (FGF-2), with different intracellular localizations and distinct effects on cell phenotype, result from alternative initiations of translation at three CUG and one AUG start codons. We showed here by Western immunoblotting and immunoprecipitation that the CUG-initiated forms of FGF-2 were synthesized in transformed cells, whereas "normal" cells almost exclusively produced the AUG-initiated form. CUG-initiated FGF-2 was induced in primary skin fibroblasts in response to heat shock and oxidative stress. In transformed cells and in stressed fibroblasts, CUG expression was dependent on cis-elements within the 5' region of FGF-2 mRNA and was not correlated to mRNA level, indicating a translational regulation. UV cross-linking experiments revealed that CUG expression was linked to the binding of several cellular proteins to FGF-2 mRNA 5' region. Since translation of FGF-2 mRNA was previously shown to occur by internal ribosome entry, a nonclassical mechanism already described for picornaviruses, the cross-linking patterns of FGF-2 and picornavirus mRNAs were compared. Comigration of several proteins, including a p60, was observed. However, this p60 was shown to be different from the p57/PTB internal entry factor, suggesting a specificity towards FGF-2 mRNA. We report here a process of translational activation of the FGF-2 CUG-initiated forms in direct relation with trans-acting factors specific to transformed and stressed cells. These data favor a critical role of CUG-initiated FGF-2 in cell transformation and in the stress response.


Asunto(s)
Transformación Celular Viral , Codón Iniciador , Factor 2 de Crecimiento de Fibroblastos/genética , Estrés Oxidativo , Biosíntesis de Proteínas , Animales , Western Blotting , Células COS , Línea Celular Transformada , Células Cultivadas , Proteínas de Unión al ADN/metabolismo , Factor 2 de Crecimiento de Fibroblastos/biosíntesis , Células HeLa , Calor , Humanos , Proteínas de Neoplasias/metabolismo , Proteína de Unión al Tracto de Polipirimidina , ARN Mensajero/genética , ARN Mensajero/metabolismo , Proteínas de Unión al ARN/metabolismo , Proteínas Recombinantes de Fusión/biosíntesis , Células Tumorales Cultivadas
17.
Cancer Res ; 56(8): 1742-5, 1996 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-8620486

RESUMEN

The ornithine decarboxylase enzyme (ODC) is the key regulator of polyamine synthesis and is a member of the cellular proto-oncogene family. Its expression becomes constitutively activated by carcinogens, viruses, and oncogenes. ODC mRNA has a long 5' untranslated region that could be important in the regulation of enzyme levels by affecting translation. To test this hypothesis, we have determined the role of this region on the constitutive ODC hyperexpression measured in AR4-2J cells, an azaserine-induced, tumor-derived pancreatic acinar cell line. Construction of expression vectors in which ODC 5' leader sequence was placed flanking the chloramphenicol acetyltransferase reporter gene allowed us to identify three AR4-2J specific, different alternatively spliced ODC 5' leaders. The 5' ends of exons 2 and 3 were lengthened by 17 and 13 bases, respectively. Translation performed in a cell-free system as well as in COS7 transient transfection experiments demonstrated that AR4-2J isoforms induce a strong increase in the rate of translation. These results provide evidence that alternative splicing observed in tumoral cells, coupled with translation regulation, relieves the translation repression mediated by the long and structured 5' untranslated region of the ODC proto-oncogene.


Asunto(s)
Empalme Alternativo , Ornitina Descarboxilasa/biosíntesis , Biosíntesis de Proteínas , ARN Mensajero/metabolismo , Animales , Secuencia de Bases , Western Blotting , Línea Celular , Cloranfenicol O-Acetiltransferasa/análisis , Cloranfenicol O-Acetiltransferasa/biosíntesis , Chlorocebus aethiops , Cartilla de ADN , Represión Enzimática , Regulación Enzimológica de la Expresión Génica , Regulación Neoplásica de la Expresión Génica , Datos de Secuencia Molecular , Páncreas , Neoplasias Pancreáticas , ARN Mensajero/biosíntesis , Ratas , Proteínas Recombinantes/análisis , Proteínas Recombinantes/biosíntesis , Mapeo Restrictivo , Transfección , Células Tumorales Cultivadas
18.
J Biol Chem ; 270(35): 20376-83, 1995 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-7657611

RESUMEN

Moloney murine leukemia virus (Mo-MuLV) genomic mRNA codes for two gag precursors by alternative initiations of translation. An AUG codon governs the synthesis of the retroviral capsid proteins precursor, whereas a CUG codon directs the synthesis of a glycosylated cell surface antigen, the gross cell surface antigen. Control of the relative synthesis of the two precursors is crucial for MuLV infectivity and pathology. Furthermore, the MuLV mRNA leader sequence is very long and should inhibit translation according to the classical scanning model. This suggests a different translation initiation mechanism allowing gag efficient expression. We demonstrate, by using bicistronic vectors expressed in COS-7 cells, that the Mo-MuLV mRNA leader drives translation initiation by internal ribosome entry. We have localized the internal ribosome entry site (IRES) between the two initiation codons. This 126 nucleotide long IRES implies an oligopyrimidine tract located 45 nucleotides upstream of AUG codon. UV cross-linking and affinity chromatography experiments show that the PTB/p57 splicing factor specifically interacts with this oligopyrimidine tract. The MuLV IRES controls alternative translation initiation by activating the capsid protein precursor expression. This gag translational enhancer could exist in other retroviruses.


Asunto(s)
Proteínas de Unión al ADN/metabolismo , Virus de la Leucemia Murina de Moloney/metabolismo , Iniciación de la Cadena Peptídica Traduccional , ARN Mensajero/metabolismo , Proteínas de Unión al ARN/metabolismo , Ribosomas/metabolismo , Animales , Secuencia de Bases , Línea Celular , Cloranfenicol O-Acetiltransferasa/biosíntesis , Chlorocebus aethiops , Codón , Cartilla de ADN , Genes Virales , Riñón , Datos de Secuencia Molecular , Virus de la Leucemia Murina de Moloney/genética , Mutagénesis Sitio-Dirigida , Conformación de Ácido Nucleico , Reacción en Cadena de la Polimerasa , Proteína de Unión al Tracto de Polipirimidina , Biosíntesis de Proteínas , ARN Mensajero/biosíntesis , ARN Mensajero/química , ARN Viral/biosíntesis , ARN Viral/química , ARN Viral/metabolismo , Proteínas Recombinantes de Fusión/biosíntesis , Ribosomas/virología , Transcripción Genética , Transfección , Proteínas Estructurales Virales/genética
19.
Mol Cell Biol ; 15(1): 35-44, 1995 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-7799942

RESUMEN

Alternative initiations of translation of the human fibroblast growth factor 2 (FGF-2) mRNA, at three CUG start codons and one AUG start codon, result in the synthesis of four isoforms of FGF-2. This process has important consequences on the fate of FGF-2: the CUG-initiated products are nuclear and their constitutive expression is able to induce cell immortalization, whereas the AUG-initiated product, mostly cytoplasmic, can generate cell transformation. Thus, the different isoforms probably have distinct targets in the cell. We show here that translation initiation of the FGF-2 mRNA breaks the rule of the cap-dependent ribosome scanning mechanism. First, translation of the FGF-2 mRNA was shown to be cap independent in vitro. This cap-independent translation required a sequence located between nucleotides (nt) 192 and 256 from the 5' end of the 318-nt-long 5' untranslated region. Second, expression of bicistronic vectors in COS-7 cells indicated that the FGF-2 mRNA is translated through a process of internal ribosome entry mediated by the mRNA leader sequence. By introducing additional AUG codons into the RNA leader sequence, we localized an internal ribosome entry site to between nt 154 and 318 of the 5' untranslated region, just upstream of the first CUG. The presence of an internal ribosome entry site in the FGF-2 mRNA suggests that the process of internal translation initiation, by controlling the expression of a growth factor, could have a crucial role in the control of cell proliferation and differentiation.


Asunto(s)
Factor 2 de Crecimiento de Fibroblastos/genética , Iniciación de la Cadena Peptídica Traduccional , ARN Mensajero/genética , Ribosomas/metabolismo , Animales , Secuencia de Bases , Chlorocebus aethiops , Cartilla de ADN/química , Factor 4E Eucariótico de Iniciación , Regulación de la Expresión Génica , Humanos , Técnicas In Vitro , Datos de Secuencia Molecular , Factores de Iniciación de Péptidos/metabolismo , Caperuzas de ARN , Secuencias Reguladoras de Ácidos Nucleicos , Transfección
20.
Mol Cell Biol ; 12(10): 4796-805, 1992 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-1406661

RESUMEN

Four forms of basic fibroblast growth factor (bFGF) are synthesized from the same mRNA, resulting from alternative initiations of translation at three CUG start codons and one AUG start codon. The CUG- and AUG-initiated forms have distinct intracellular localizations and can modify cell phenotypes differently, indicating that control of the alternative expression of the different forms of bFGF has an important impact on the cell. In this study, we investigated the roles of the mRNA 5' untranslated region and the alternatively translated region located between the CUG and AUG codons in the regulation of alternative translation of the different forms of bFGF. Deletions and site-directed mutagenesis were carried out in bFGF mRNA leader, and translation was studied in vitro and in vivo. The results enabled us to identify five cis-acting RNA elements (two in the 5' untranslated region and three in the alternatively translated region) involved in the regulation of either global or alternative initiation of translation. Each of these elements had a specific effect on the level of synthesis of the different forms of bFGF. Furthermore, we showed that the 5' untranslated region regulatory elements had different effects on bFGF translation, depending on the translation system used. These results suggest that bFGF translation is modulated by cis-acting elements corresponding to secondary or tertiary RNA structures, which could be the targets of cell-specific trans-acting factors.


Asunto(s)
Factor 2 de Crecimiento de Fibroblastos/genética , Biosíntesis de Proteínas , ARN Mensajero/genética , Secuencias Reguladoras de Ácidos Nucleicos , Animales , Secuencia de Bases , Unión Competitiva , Western Blotting , Línea Celular , Codón , ADN , Regulación de la Expresión Génica , Humanos , Datos de Secuencia Molecular , Mutagénesis
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