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1.
Genetika ; 49(7): 814-23, 2013 Jul.
Article Ru | MEDLINE | ID: mdl-24450150

Glycolysis is a main catabolic pathway of glucose metabolism, accompanied by ATP synthesis. More than 30 enzymes are involved in glycolysis, and genes that encode them can be considered housekeeping genes due to the high conservatism and evolutionary antiquity of the process. We studied the expression of these genes in kidney papillary cancer and planocellular lung cancer via the bioinformatic analysis of transcriptome database and method of quantitative real time PCR. Quantitative analysis of mRNA level demonstrated that only a part ofgenes that encode glycolysis enzymes maintain relatively stable mRNA level, including the HK1, ADPGK, GPI, PGK1, and PKM2 genes in kidney papillary cancer and the ADPGK, ALDOA, GAPDH, PGK1, BPGM, ENO1, and PKM2 genes in planocellular lung cancer. The frequent increase in the mRNA expression of PFKP, ALDOA, and GAPDH genes in kidney cancer, as well as the GPI gene in lung cancer, were detected for the first time by real time PCR. For other genes, their differential expression was demonstrated; the cases of both a decrease and increase in the mRNA level were detected. Thus, several genes that can be used as control genes in transcriptome analysis by real time PCR in kidney and lung cancer, as well as a number of differentially expressed genes that can be potential oncomarkers, were identified.


Carcinoma, Squamous Cell/metabolism , Gene Expression Regulation, Neoplastic , Glycolysis/genetics , Kidney Neoplasms/metabolism , Lung Neoplasms/metabolism , Transcription, Genetic , Carcinoma, Squamous Cell/genetics , Genes, Essential , Humans , Kidney Neoplasms/genetics , Lung Neoplasms/genetics , Transcriptome
2.
Radiats Biol Radioecol ; 52(4): 428-30, 2012.
Article Ru | MEDLINE | ID: mdl-23033804

Some physical treatments, such as microwave- and gamma-radiation and magnetic field, induce long-term transition of air-dry seeds from the fraction of strong seeds into the weak seed fraction, due to non-enzymatic hydrolysis ofbiomacromolecules. These physical factors make water molecules more active, which is followed by the release of water molecules from the hydration layer, disturbance of this layer structure, further activation of water molecules by means of the "domino effect," and accumulation of hydrolysis products.


Electromagnetic Radiation , Hydrolysis/radiation effects , Plants , Germination/radiation effects , Plant Development , Plants/radiation effects , Seedlings/radiation effects , Seeds/growth & development , Seeds/radiation effects , Water/chemistry
3.
Radiats Biol Radioecol ; 52(4): 394-400, 2012.
Article Ru | MEDLINE | ID: mdl-23033800

The seeds with low level of room temperature phosphorescence (RTP) were selected from a lot of air-dry peas (Pisum sativum) with 62% germination. These strong seeds (95-97% germination percentage) in air-dry, imbibed or emerged states were exposed to 905 MHz GSM-band electromagnetic radiation (EMR). The following effects of EMR were observed. Fraction II with higher RTP level appeared in the air-dry seeds. The germination rate decreased 2-3 fold in the air-dry, swollen and sprouting seeds due to an increase in the ratio of the seedlings with morphological defects (from 3 to 38%) and suffocated seeds (from 1 to 15%). We suggest tentative mechanisms to account for the decreased fitness of peas under GSM-band EMR (905 MHz); also discussed is the role of non-enzymatic hydrolysis of carbohydrates and amino-carbonyl reaction in this process.


Cell Phone , Electromagnetic Radiation , Pisum sativum/radiation effects , Seeds/radiation effects , Germination/radiation effects , Pisum sativum/physiology , Seedlings , Seeds/physiology
4.
Genetika ; 48(5): 599-607, 2012 May.
Article Ru | MEDLINE | ID: mdl-22830255

Multiple changes in the genome, transcriptome, and proteome are frequent in cancer cells. A search for molecular markers based on DNA, mRNA, or proteins is a main method to develop early specific diagnostics for cancer. While universal markers are still unavailable, similar trends are known for the expression patterns of particular genes in certain epithelial tumors. A bioinformatic screening of transcriptomic databases identified the NETO2 gene as a new potential promising marker of renal cancer. A substantial increase in NETO2 mRNA level was detected in 90% clear-cell renal cell carcinomas, 70% of non-small cell lung cancers, and 50% of papillary renal cancers by real-time PCR. The NETO2 mRNA level was increased to a lesser extent in cervical carcinoma and colon cancer and tended to decrease in cancer of the stomach. The NETO2 gene, which codes for a membrane glycoprotein with an unclear function, was assumed to provide a new promising marker for early diagnosis in renal cancer and non-small cell lung cancer.


Biomarkers, Tumor/metabolism , Gene Expression Regulation, Neoplastic , Kidney Neoplasms , Lung Neoplasms , Membrane Proteins/metabolism , Animals , Biomarkers, Tumor/genetics , Carcinoma, Non-Small-Cell Lung/genetics , Carcinoma, Non-Small-Cell Lung/metabolism , Carcinoma, Renal Cell/genetics , Carcinoma, Renal Cell/metabolism , Databases, Protein , Expressed Sequence Tags/metabolism , Humans , Kidney Neoplasms/genetics , Kidney Neoplasms/metabolism , Lung Neoplasms/genetics , Lung Neoplasms/metabolism , Membrane Proteins/genetics , Mice , Sequence Homology , Transcriptome
5.
Radiats Biol Radioecol ; 52(1): 50-7, 2012.
Article Ru | MEDLINE | ID: mdl-22568014

The aim of this work was to determine which processes in air-dry seeds result in bimodal changes of the pea seed quality under the influence of low doses of gamma-radiation. Pea seeds (cv. "Nemchinovsky-85", harvest 2006, 82% germination persentage) were exposed to gamma-radiation at doses of 3, 10 and 100 Gy The germination percentage decreased to 45% four days after irradiation at the dose of 3 Gy, rised up to 87% at doses of 10 Gy, while the dose of 100 Gy killed the most part of seeds. Seed fractions differing in quality were selected using the metod of Room temperature phosphorecsence (RTP): strong seed frasction I from non-irradiated seeds; weak seed fraction II from the seeds irradiated at a dose of 3 Gy; dead seeds from the seeds irradiated at a dose of 100 Gy. ThermoChemiLuminecnsece (TCL) of seed powders and cotyledons was used. It was shown that the increase of the TCL level in the temperature range from 50 to 110 degreesC was associated with the lipid peroxidation products. The TCL level of seeds subjected to gamma-irradiation at a dose of 3 Gy was similar to that of non-irradiated seeds in the temperature range 50 to 100 degreesC. Therefore, lipid peroxidation was not the cause of the abnormal seedling appearance. The TCL level within this temperature range was increased only in seeds subjected to y-irradiation at a dose of 100 Gy. The TCL level at 150 degreesC was in proportion with the exogenous glucose amount. The increased TCL level of seeds subjected to y-irradiation at a dose of 3 Gy at 150 degreesC resulted from the increase of the glucose content. This means that the transition from the fraction of strong seeds into the fraction of weak ones was the result of the activation of hydrolysis processes. Decrease in the water content of seeds testified to utilization of bound water in this process. The decrease of the glucose content in the "improved" seeds subjected to gamma-irradiation at a dose of 10 Gy most probably indicates the participation of glucose in the amino carbonyl reaction. The latter could be the reason for the increased water content in the "improved" seeds and a decreased water permeability of cell membranes.


Glucose/metabolism , Lipid Peroxidation/radiation effects , Luminescent Measurements/methods , Pisum sativum/radiation effects , Seeds/radiation effects , Gamma Rays , Glucose/radiation effects , Lipid Metabolism/radiation effects , Pisum sativum/metabolism , Radiation Dosage
6.
Radiats Biol Radioecol ; 47(1): 28-33, 2007.
Article Ru | MEDLINE | ID: mdl-17387993

Pea seeds (Pisum sativum L.) from the seed lot with 80% germinability were separated in fractions according to room temperature phosphorescence: strong seeds were assigned to fraction I, and weak seeds formed to fraction II. During imbibition, the seeds of fraction II exhibited twofold higher rates of water uptake and experienced hypoxia. Some of these seeds suffocated from hypoxia, and other seeds produced seedlings with morphological defects (such seeds were considered incapable of germination). One week after irradiation with the dose of 3 Gy, germination percentage decreased to 45%, which was caused by the increase of number of weak seeds. The germinability of seeds subjected to gamma-irradiation at doses of 7 and 10 Gy was similar to that of control seeds. In these sub-lots, there appeared so-called "improved" seeds, which were similar to non-irradiated seeds in terms of phosphorescence level, the rate of water uptake and germination percentage. It was shown with the use of PCMB that the difference in the rates of water uptake by seeds of fraction I and II depended on the permeability of cell membranes. The permeability was determined by the state of aquaporins ("open"-"closed"). The experiments with phosphatase inhibitor (NaF) shown that in seeds irradiated with dose of 3 Gy (fraction II), the mechanism of aquaporins closing was broken (phosphatase was inactivated). In "improved" seeds (after irradiation with dose of 10 Gy), aquaporins were closed irreversibly in air-dry state, when aquaporin dephosphorylation was unlikely. It was concluded that the abnormal increase (following the initially decrease) in germination of pea seeds after irradiation can be explained without invoking the hypothesis on hyper function of reparatory mechanism of at low doses of irradiation.


Aquaporins/radiation effects , Germination/radiation effects , Pisum sativum/growth & development , Plant Proteins/radiation effects , Seeds/growth & development , Aquaporins/analysis , Aquaporins/physiology , Cell Membrane/chemistry , Cell Membrane/radiation effects , Gamma Rays , Germination/drug effects , Pisum sativum/drug effects , Pisum sativum/radiation effects , Phosphoric Monoester Hydrolases/antagonists & inhibitors , Plant Proteins/physiology , Radiation Dosage , Seeds/drug effects , Seeds/radiation effects , Sodium Fluoride/pharmacology
7.
Radiats Biol Radioecol ; 46(6): 691-6, 2006.
Article Ru | MEDLINE | ID: mdl-17323697

Pea seeds (cv. 'Nemchinovskii-85', harvest of 2002, 80%-germination percentage) were exposed to gamma-radiation with doses ranging from 19 cGy to 100 Gy. One week after the irradiation with doses of 19 cGy and 3 Gy. the germination percentage decreased to 58 and 45%, respectively; at doses of 7 and 10 Gy it was 73 and 70% respectively. At greater doses (25, 50, and 100 Gy), germination percentage decreased in proportion. Anomalous changes in seed germination percentage (as a function of irradiation dose) were caused by the redistribution of irradiated seeds between fractions I and II. The measurements of room temperature phosphorescence in air-dry seeds and the phosphorescence of endogenous porphyrines of imbibing seeds showen that the germination decrease after the irradiation with low doses (19 cGy and 3 Gy) was caused by the increase in the number of weak seeds of fraction II, which had high rates of water uptake and suffered from hypoxia under seed coat. Some of these seeds suffocated from hypoxia, and other seeds produced seedlings with morphological defects (such seeds were considered incapable of germination). During storage of seeds irradiated at doses 19 cGy-10 Gy, the recovery of germination percentage (after its initial decrease) was caused by the decrease in seed number in fraction II. The subsequent germination decrease was caused by seed death. The higher was the irradiation dose, the faster were changes in germination percentage during storage of irradiated seeds. Bimodal changes in pea seed germination with the increase of y-irradiation dose has apparently the same origin as the changes in seed germination during accelerated ageing.


Germination/radiation effects , Pisum sativum/physiology , Pisum sativum/radiation effects , Seeds/radiation effects , Dose-Response Relationship, Radiation , Gamma Rays , Seeds/physiology , Time Factors
8.
Radiats Biol Radioecol ; 43(3): 355-7, 2003.
Article Ru | MEDLINE | ID: mdl-12881996

Novel explanation is proposed for the improvement of low quality seeds by pre-sowing treatment with factors of various nature (heat and sonic treatment, electrical field of corona discharge, laser irradiation). The increase in seed germination percentage is caused by slowing-down of seed water uptake as a result of closing the aquaporin water canals.


Germination/physiology , Seeds/physiology , Aquaporins/metabolism , Electric Stimulation , Germination/drug effects , Germination/radiation effects , Hot Temperature , Lasers , Propyl Gallate/pharmacology , Seeds/drug effects , Sonication , Water/metabolism
9.
Biofizika ; 48(2): 361-7, 2003.
Article Ru | MEDLINE | ID: mdl-12723364

The properties of the mixing layer in dynamic systems were studied by the example of a mathematical model of the cubic image type. Its role in the generation of information and the evolution of its significance was shown. At the moment of generation, information is of zero significance, and this significance then increases. A criterion of efficiency was proposed, and the optimum moment of making a decision in creative work was determined. It was shown that the increase in the variability of the parameters of a living system upon entry into the mixing layer and its decrease upon exit can serve as objective indicators of the transition of the system from one dynamic regime (attractor) to another.


Information Theory , Nonlinear Dynamics , Algorithms , Computer Simulation , Game Theory , Models, Theoretical , Pisum sativum/physiology , Seeds/physiology
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