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1.
Clin Transl Oncol ; 24(5): 902-908, 2022 May.
Artículo en Inglés | MEDLINE | ID: mdl-35001341

RESUMEN

PURPOSE: To explore the underlying risk factors and to prevent misdiagnosis of cervical intraepithelial neoplasia (CIN) coexisted with vaginal intraepithelial neoplasia (VaIN). METHODS: Clinical data of patients pathologically diagnosed with CIN were collected from January 2017 to December 2018. A total of 446 cases were analyzed, including 406 cases of single lesions ('CIN single' group) and 40 cases complicated with VAIN ('VAIN concurrent' group). RESULTS: The median age of the VAIN concurrent group was 53 years (46.25-59 years), and the median age of the CIN single group was 44 years (36-50 years). Regarding menopausal status, there were 28 cases (70.0%) in the VAIN concurrent group and 89 cases (21.9%) in the CIN single group (P < 0.005). The median load of high-risk human papillomavirus (Hr-HPV) in the VAIN concurrent and CIN single group was 923.4 relative light units/cutoff (RLU/CO) (145-2172.2 RLU/CO) and 229.155 RLU/CO (18.615-638.1275 RLU/CO), respectively (P = 0.037). The results revealed that the menopausal status was an independent risk factor for VAIN occurrence in CIN patients. The risk of VAIN in menopausal patients was higher than that in non-menopausal CIN patients (OR = 8.311, 95% CI 4.062-17.005). Age and HPV load were also related to the concurrence of VAIN and CIN. CONCLUSION: Examinations regarding vaginal screening are of great importance in the diagnosis of perimenopausal and postmenopausal CIN patients, especially patients with Hr-HPV load. Colposcopy and tissue biopsy should also be performed, when necessary, to avoid misdiagnosis and the appearance of vaginal lesions.


Asunto(s)
Carcinoma in Situ , Infecciones por Papillomavirus , Displasia del Cuello del Útero , Neoplasias del Cuello Uterino , Neoplasias Vaginales , Adulto , Carcinoma in Situ/epidemiología , Colposcopía , Femenino , Humanos , Persona de Mediana Edad , Infecciones por Papillomavirus/complicaciones , Embarazo , Neoplasias del Cuello Uterino/patología , Neoplasias Vaginales/complicaciones , Displasia del Cuello del Útero/patología
2.
Genet Mol Res ; 15(3)2016 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-27706673

RESUMEN

Stearoyl-coenzyme A desaturase 1 (SCD1) is the key limiting enzyme in the synthesis of monounsaturated fatty acids, and plays a crucial role in the regulation of oleic acid. In this study, 165 ten-week-old Cherry Valley ducks were used to investigate single nucleotide polymorphisms (SNPs) in the 5' regulatory region of the SCD1 gene, and their associations with duck serum biochemical levels and fatty acid composition. Two novel SNPs, g.936516 C > G and g.936551 T > C, were found by polymerase chain reaction-single-strand conformation polymorphism analysis and DNA sequencing methods, exhibiting six genotypes (AA, BB, CC, AB, AC, and BC). The frequency of the dominant genotype BB and allele B was 0.321 and 0.403, respectively. The polymorphism information content value was 0.617, indicating high polymorphism. The chi-square test indicated that the genotype distribution deviated markedly from Hardy-Weinberg equilibrium (P < 0.01). The linkage of the two mutant sites in the duck SCD1 gene had significant effects on the serum albumin, total protein, globulin, triglyceride, total cholesterol, and cholinesterase levels, as well as on 16 kinds of fatty acids except for C14:1 and C20:0 (P < 0.05). These results indicated that the C allele might have a positive effect on polyunsaturated fatty acids with potential health benefits. Therefore, the SCD1-gene-specific SNPs in the 5' regulatory region may be a useful marker for serum lipid, serum protein, and fatty acid composition in future marker-assisted selection for duck breeding.


Asunto(s)
Proteínas Aviares/genética , Patos/genética , Ácidos Grasos/sangre , Estearoil-CoA Desaturasa/genética , Regiones no Traducidas 5' , Animales , Proteínas Aviares/sangre , Secuencia de Bases , Biomarcadores/sangre , Proteínas Sanguíneas/metabolismo , Cruzamiento , Femenino , Frecuencia de los Genes , Ligamiento Genético , Polimorfismo de Nucleótido Simple , Polimorfismo Conformacional Retorcido-Simple , Análisis de Secuencia de ADN
3.
Genet Mol Res ; 15(3)2016 Jul 29.
Artículo en Inglés | MEDLINE | ID: mdl-27525875

RESUMEN

Cysteine-rich polycomb-like (CPP) proteins are members of a small family of transcription factors, which have been identified and characterized in Arabidopsis, rice, and soybean. In this study, we investigated CPP-like genes in the maize genome. The results revealed 13 putative CPP-like genes, which were found to encode 17 distinct transcripts and were distributed unequally on 7 of 10 maize chromosomes. Analysis of phylogenetic relationships showed that Arabidopsis, rice, and maize CPP-like transcription factors can be grouped into two subfamilies. We also used real-time RT-PCR to evaluate changes in the transcript levels of ZmCPP genes in response to abiotic stresses (heat, cold, salt, and drought stresses). These findings provide an overview of the evolution of the ZmCPP gene family, which will aid in the functional characterization of CPP-like genes in maize growth and development.


Asunto(s)
Proteínas de Plantas/fisiología , Factores de Transcripción/fisiología , Transcriptoma , Zea mays/genética , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Mapeo Cromosómico , Cromosomas de las Plantas/genética , Secuencia Conservada , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Genoma de Planta , Filogenia , Análisis de Secuencia de ADN , Estrés Fisiológico , Zea mays/metabolismo
4.
Genet Mol Res ; 15(2)2016 May 12.
Artículo en Inglés | MEDLINE | ID: mdl-27323011

RESUMEN

Brain damage caused by perinatal asphyxia is dangerous for neonatal infants, but the mechanism by which it occurs remains elusive. In this study, microRNA-152 (miR-152) expression was induced by low oxygen levels in rat models of hypoxia brain damage, as well as in human brain microvascular endothelial cells (HBMECs) cultured in vitro. Analysis of the sequence of miR-152 revealed that the phosphatase and tensin homolog gene (PTEN) is probably the target of miR-152 both in humans and rats. When HBMECs were transfected with miR-152 mimics, PTEN expression was inhibited at both the mRNA and protein levels. Moreover, transfection with the miR-152 mimic also inhibited apoptosis induced by hypoxia. Furthermore, expression of the pro-apoptotic gene Bax was downregulated while the anti-apoptotic gene Bcl2 was upregulated after miR-152 mimic transfection. Taken together, these results indicate that miR-152 induced by hypoxia suppresses cell apoptosis and acts as a protective factor during hypoxia by repressing PTEN.


Asunto(s)
Células Endoteliales/enzimología , Hipoxia Encefálica/metabolismo , MicroARNs/biosíntesis , Oxígeno/metabolismo , Fosfohidrolasa PTEN/genética , Animales , Apoptosis/genética , Encéfalo/irrigación sanguínea , Hipoxia de la Célula/fisiología , Células Endoteliales/metabolismo , Células HEK293 , Humanos , Hipoxia Encefálica/patología , Masculino , Microvasos/enzimología , Microvasos/metabolismo , Modelos Animales , Fosfohidrolasa PTEN/metabolismo , Ratas , Ratas Sprague-Dawley
5.
Genet Mol Res ; 15(2)2016 May 13.
Artículo en Inglés | MEDLINE | ID: mdl-27323033

RESUMEN

Piwi-interacting RNAs (piRNAs) are a class of small non-coding RNAs. Distinguishing piRNAs from other non-coding RNAs is important because of their important role in the physiological regulation of spermatogenesis, genome protection from transposons, and regulation of mRNAs and long non-coding RNAs. Few computational studies have addressed piRNAs detection, and both effectiveness and efficiency of piRNA detection tools require improvement. In this study, a piRNA detection method based on sequence features and a support vector machine was developed. Four types of features are proposed: weighted k-mer, weighted k-mer with wildcards, position-specific base, and piRNA length. The piRNA sequences from human, mouse, rat, and drosophila were respectively used in this experiment. Compared to existing algorithms, the proposed method provides a better balance between precision and sensitivity (both are approximately 90%), and although these values were slightly slower than those obtained using the piRNA annotation approach, the proposed method was four-fold faster than piRPred and 229-fold faster than piRNA predictor.


Asunto(s)
ARN Interferente Pequeño/análisis , ARN Interferente Pequeño/genética , Análisis de Secuencia de ARN/métodos , Algoritmos , Animales , Drosophila/genética , Genoma , Humanos , ARN Interferente Pequeño/aislamiento & purificación , ARN Interferente Pequeño/metabolismo , Programas Informáticos , Máquina de Vectores de Soporte
6.
Genet Mol Res ; 15(2)2016 May 23.
Artículo en Inglés | MEDLINE | ID: mdl-27323079

RESUMEN

Cluster of differentiation 36 (CD36) plays a crucial role in lipid sensing, innate immunity, atherogenesis, and glycolipid metabolism. This aims of this study were to delineate the CD36 mRNA expression profile in 16 duck tissues using relative quantitative real-time PCR and to screen single nucleotide polymorphisms (SNPs) in the duck CD36 gene by PCR-single strand conformation polymorphism and DNA direct sequencing. In addition, this study investigated CD36 gene expression, genetic variation, and their effect on serum biochemical indices in duck. The results showed that CD36 mRNA was expressed in all tissues, and was highly specific to the pituitary and large intestine, and to subcutaneous and abdominal fat. Furthermore, three genotypes of the SNP g.476593 T > C in exon 9 of the duck CD36 gene were identified: MM, MN, and NN. The dominant genotype and allele were MM and M, with frequencies of 0.453 and 0.643, respectively. The genotype distributions deviated from Hardy-Weinberg equilibrium (P < 0.05) and achieved moderate levels of polymorphism in ducks. Correlation results showed that CD36 mRNA was significantly negatively correlated with triglycerides (P < 0.05), and significantly positively correlated with total protein, globulin, low-density lipoprotein cholesterol, and total cholesterol (P < 0.01). All serum biochemical indices measured, with the exception of triglycerides, in birds with the NN genotype were significantly higher than those in birds with the MM genotype. These findings demonstrated that CD36 might be an important genetic marker for the selection of lipid metabolism and meat quality traits in ducks.


Asunto(s)
Antígenos CD36/sangre , Patos/genética , Estudios de Asociación Genética , Carne , Alelos , Animales , Patos/crecimiento & desarrollo , Exones/genética , Genotipo , Metabolismo de los Lípidos/genética , Polimorfismo de Nucleótido Simple/genética , Análisis de Secuencia de ADN
7.
Genet Mol Res ; 15(2)2016 Apr 07.
Artículo en Inglés | MEDLINE | ID: mdl-27173214

RESUMEN

Broccoli and cabbage are important vegetable crops that produce hybrid seeds after insect pollination; the size of floral organs is crucial for this process. To investigate the genetic characteristics of floral organ sizes (corolla width, petal length and width, and lengths of stamen, anther, style, and stigma) and to improve the flower size and breeding efficiency of broccoli, we used multi-generation analysis of a major gene plus polygene model. Six populations obtained from a broccoli inbred line 93219 (small floral organs) and cabbage inbred line 195 (large floral organs) were used for the analysis. Corolla and petal width and stamen and anther length were controlled by the additive-dominance-epistasis polygene model. The heritability of these traits in BC1, BC2, and F2 generations was high (72.80-93.76%). Petal and stigma length were governed by the two major genes of additive-dominance-epistasis effects plus additive-dominance polygene model; the major gene heritability in the F2 generation were 79.17 and 65.77%, respectively. Style length was controlled by one major gene of additive-dominance effects plus additive-dominance-epistasis polygene model; the major gene heritability in BC1, BC2, and F2 were 40.60, 10.35, and 38.44%, respectively; the polygene heritability varied from 41.85 to 68.44%. Our results provide important genetic information for breeding, which could guide improvement of flower-related traits and lay the foundation for quantitative trait loci mapping of the flower-size traits in Brassica.


Asunto(s)
Brassica/genética , Epistasis Genética , Hibridación Genética , Herencia Multifactorial , Flores/anatomía & histología , Flores/genética , Genes Dominantes , Genes de Plantas , Carácter Cuantitativo Heredable
8.
Genet Mol Res ; 15(1)2016 Jan 26.
Artículo en Inglés | MEDLINE | ID: mdl-26909922

RESUMEN

Here, polycythemia vera (PV)-related genes were screened by the Online Mendelian Inheritance in Man (OMIM), and literature pertaining to the identified genes was extracted and a protein-protein interaction network was constructed using various Cytoscape plugins. Various molecular complexes were detected using the Clustervize plugin and a gene ontology-enrichment analysis of the biological pathways, molecular functions, and cellular components of the selected molecular complexes were identified using the BiNGo plugin. Fifty-four PV-related genes were identified in OMIM. The protein-protein interaction network contains 5 molecular complexes with correlation integral values >4. These complexes regulated various biological processes (peptide tyrosinase acidification, cell metabolism, and macromolecular biosynthesis), molecular functions (kinase activity, receptor binding, and cytokine activity), and the cellular components were mainly concentrated in the nucleus, intracellular membrane-bounded organelles, and extracellular region. These complexes were associated with the JAK-STAT signal transduction pathway, neurotrophic factor signaling pathway, and Wnt signaling pathway, which were correlated with chronic myeloid leukemia and acute myeloid leukemia.


Asunto(s)
Redes Reguladoras de Genes , Leucemia Mielógena Crónica BCR-ABL Positiva/genética , Leucemia Mieloide Aguda/genética , Redes y Vías Metabólicas/genética , Policitemia Vera/genética , Mapeo de Interacción de Proteínas , Bases de Datos Genéticas , Regulación de la Expresión Génica , Ontología de Genes , Humanos , Janus Quinasa 1/genética , Janus Quinasa 1/metabolismo , Leucemia Mielógena Crónica BCR-ABL Positiva/metabolismo , Leucemia Mielógena Crónica BCR-ABL Positiva/patología , Leucemia Mieloide Aguda/metabolismo , Leucemia Mieloide Aguda/patología , Anotación de Secuencia Molecular , Policitemia Vera/metabolismo , Policitemia Vera/patología , Factores de Transcripción STAT/genética , Factores de Transcripción STAT/metabolismo , Transducción de Señal , Proteínas Wnt/genética , Proteínas Wnt/metabolismo
9.
Genet Mol Res ; 14(4): 15921-9, 2015 Dec 07.
Artículo en Inglés | MEDLINE | ID: mdl-26662383

RESUMEN

Excision repair cross-complementing gene-1 (ERCC1) is a key regulatory enzyme whose expression patterns in tumor tissues are associated with survival in gastric cancer. The present study aimed to evaluate the effects of ERCC1 expression in peripheral blood lymphocytes (PBLs) on the outcome of patients with gastric cancer treated with oxaliplatin-based adjuvant chemotherapy. Tumor and PBL samples from 48 patients treated with adjuvant oxaliplatin-based chemotherapy for gastric cancer were analyzed. Immunohistochemistry was used to assess the expression of ERCC1. After a median follow-up of 18.5 months, the median disease-free survival (DFS) and overall survival (OS) were 12 and 20 months, respectively. Expression of ERCC1 was found in 72.9% (35/48), 56.3% (27/48), and 10.0% (2/20) of tumor tissues, PBLs from gastric cancer patients, and PBLs from controls, respectively. A significant positive correlation between ERCC1 expression in PBL and cancer tissue was found (χ(2) = 12.098, P = 0.001, Pearson contingency coefficient = 0.502). Patients with negative expression of ERCC1 in tumor tissues had a significantly longer median DFS and median OS compared to patients with positive expression of ERCC1 (median DFS, 18 vs 10 months, P = 0.006; median OS, 30 vs 17 months, P = 0.012). In PBLs, high expression of ERCC1 was associated with decreased DFS (9 vs 18 months, P = 0.032), but not OS (16 vs 24 months, P = 0.057). Patients with gastric cancer exhibiting negative expression of ERCC1 are more likely to benefit from oxaliplatin-based adjuvant chemotherapy.


Asunto(s)
Proteínas de Unión al ADN/metabolismo , Endonucleasas/metabolismo , Linfocitos/metabolismo , Neoplasias Gástricas/metabolismo , Neoplasias Gástricas/mortalidad , Adulto , Anciano , Protocolos de Quimioterapia Combinada Antineoplásica/uso terapéutico , Quimioterapia Adyuvante , Proteínas de Unión al ADN/genética , Endonucleasas/genética , Femenino , Estudios de Seguimiento , Expresión Génica , Humanos , Inmunohistoquímica , Estimación de Kaplan-Meier , Masculino , Persona de Mediana Edad , Metástasis de la Neoplasia , Estadificación de Neoplasias , Compuestos Organoplatinos/administración & dosificación , Oxaliplatino , Pronóstico , Neoplasias Gástricas/tratamiento farmacológico , Neoplasias Gástricas/patología , Resultado del Tratamiento , Adulto Joven
10.
Genet Mol Res ; 14(4): 14908-19, 2015 Nov 23.
Artículo en Inglés | MEDLINE | ID: mdl-26600552

RESUMEN

Testis-specific serine kinases (TSSKs) are a family of serine/threonine kinases highly expressed in the testes that are responsible for regulating many spermatogenesis-related protein activities. Mutations in this family have a positive relationship with oligospermia and azoospermia in human and mouse. Here, five members of the TSSK family from a Banna mini-pig inbred line (BMI) were cloned, sequenced, and characterized. The full-length coding sequences of BMI TSSKs varied from 807 (TSSK3) to 1095 bp (TSSK1) and encoded 268 to 364 amino acids with molecular weights in the range 30.11 to 41.34 kDa. Following comparison with TSSK4 genes in other species, BMI TSSK4 was found to contain three alternatively spliced variants, inform1, inform 3, and inform 4. BMI TSSK1 and TSSK2 are co-localized on the Sus scrofa chromosome (SSC) 14, and consist of a single exon; TSSK3, TSSK4, and TSSK6 are on SSC6, SSC7, and SSC2, and consist of two, four, and one exon, respectively. Multiple protein sequence alignment and phylogenetic analysis showed that the regions spanning the S_TKc domains were more conserved between pig and other animals: with TSSK1 and TSSK2 and TSSK3 and TSSK6 displaying the greatest degree of homology across species, and the TSSK4 protein clearly distinct from other members. Multi-tissue RT-PCR showed BMI TSSK1, TSSK3, and TSSK4 were only expressed in the testes and seminal vesicle, TSSK2 was confined to testes only, while TSSK6 was expressed widely in adult tissues but was highest in the testes.


Asunto(s)
Familia de Multigenes/genética , Proteínas Serina-Treonina Quinasas/genética , Espermatogénesis/genética , Testículo/crecimiento & desarrollo , Adulto , Secuencia de Aminoácidos/genética , Animales , Clonación Molecular , Regulación del Desarrollo de la Expresión Génica , Humanos , Masculino , Ratones , Especificidad de Órganos/genética , Filogenia , Proteínas Serina-Treonina Quinasas/biosíntesis , Vesículas Seminales/crecimiento & desarrollo , Vesículas Seminales/metabolismo , Porcinos , Porcinos Enanos , Testículo/metabolismo
11.
Genet Mol Res ; 14(4): 12912-20, 2015 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-26505444

RESUMEN

Growth and meat quality traits play important roles in the evaluation of cattle productivity and are influenced by genetic and environmental factors. CRTC2 is a recently discovered gene related to obesity that may influence fat deposition. The aim of the current study was to detect polymorphisms of bovine CRTC2 and explore their relationships to growth and meat quality in Qinchuan cattle. Three single nucleotide polymorphisms (SNPs); g.3001 C>T; g.3034 G>A; and g.3467 T>C, were identified from sequencing results of 422 Qinchuan cattle. The genotypic distributions of both g.3034 G>A and g.3467 T>C mutations were in agreement with Hardy-Weinberg equilibrium, (P < 0.05), while the T3001C mutation was not (P > 0.05), based on χ(2) test analysis. The SNPs g.3001 C>T and g.3034 G>A are missense mutations (Ser/Phe and Ser/Thr respectively). Additionally, SNPs g.3034 G>A and g.3467 T>C showed a medium polymorphism level (0.25 < PIC< 0.50), whereas g.3001 C>T showed a low polymorphism level (PIC < 0.25). These three SNPs were significantly associated with several growth and meat quality traits in the Qinchuan cattle population (P < 0.05 or P < 0.01). Collectively, these results demonstrate that CRTC2 is involved in the regulation of cattle growth and meat quality, and suggest that CRTC2 is a potential candidate gene for marker-assisted selection in future breeding development programs for Qinchuan cattle.


Asunto(s)
Bovinos/genética , Carne/normas , Polimorfismo de Nucleótido Simple/genética , Factores de Transcripción/genética , Alelos , Animales , Frecuencia de los Genes/genética , Estudios de Asociación Genética , Genotipo , Técnicas de Genotipaje , Análisis de Secuencia de ADN
12.
Genet Mol Res ; 14(3): 9325-33, 2015 Aug 10.
Artículo en Inglés | MEDLINE | ID: mdl-26345866

RESUMEN

The aim of this study was to investigate the effect of phosphatidylserine (PS) on memory of patients and rats with Alzheimer's disease (AD). In total, 57 AD patients were recruited from our hospital, and were divided into two groups: 25 in the control group and 32 in the observation group. Next, 300 mg/d of PS was given to the rats in the observation group for 12 continuous weeks based on the control group. AD rats were divided into three groups: control group, PS 30 mg/kg group, and PS 15 mg/kg group. Learning memory ability and free radical levels in the brain were detected after treatment. In AD patients, vocabulary and picture matching scores in the two treatment groups increased after treatment (P < 0.05). Moreover, the scores in the treated group were significantly greater than the control group (P < 0.05). In AD rats, PS treatment reduced the escape latent period of AD rats, increased SOD and OH(-), and decreased acetylcholinesterase levels (P < 0.05). Compared with PS 15 mg/kg, PS 30 mg/kg group was significantly more efficacious (P < 0.05). Compared with the AD model group, hippocampal cells showed normal arrangement, karyopyknosis decreased, and the pathological changes in the two PS groups were considerable. In conclusion, PS decreased cholinesterase, improved memory, and improved hippocampal inflammation injury in AD brains by increasing SOD and OH(-) levels.


Asunto(s)
Enfermedad de Alzheimer/metabolismo , Enfermedad de Alzheimer/psicología , Memoria , Fosfatidilserinas/metabolismo , Anciano , Anciano de 80 o más Años , Enfermedad de Alzheimer/diagnóstico , Péptidos beta-Amiloides/metabolismo , Animales , Conducta Animal , Encéfalo/metabolismo , Encéfalo/patología , Modelos Animales de Enfermedad , Femenino , Humanos , Masculino , Persona de Mediana Edad , Fragmentos de Péptidos/metabolismo , Ratas
13.
Genet Mol Res ; 14(2): 5750-62, 2015 May 29.
Artículo en Inglés | MEDLINE | ID: mdl-26125774

RESUMEN

Y-box proteins are a family of highly conserved nucleic acid binding proteins that interact with genome and transcription product to modulate the transcriptional and translational processes. In the present study, a complete mRNA of Y-box binding protein (designated SmYB) was obtained from Sepiella maindroni by amplification of flanking sequences. The full size of SmYB cDNA was 1502 bp, including 99 bp at the 5ꞌ untranslated region (UTR), a 3ꞌ UTR of 821 bp with a poly (A) tail, and an open reading frame of 582 bp, encoding a polypeptide of 193 amino acids with the predicted molecular weight of 16.48 kDa. The conserved cold-shock domain and two known RNA binding motifs identified in SmYB strongly suggested that SmYB was a new member of Y-box proteins. Quantitative real-time PCR was performed to examine the expression of SmYB mRNA in various tissues, embryos, and its temporal expression in liver after cold shock. The mRNA transcript of SmYB was detected in all examined tissues, with the highest expression level in testis and ovary. SmYB was abundant in early developmental stages of S. maindroni embryos but diminished in the late post-embryonic development. In addition, cold-shock treatment upregulated the transcription of SmYB mRNA in liver. These results demonstrated that SmYB is involved in embryonic development of S. maindroni and its tolerance to acute low temperatures.


Asunto(s)
Decapodiformes/genética , Desarrollo Embrionario/genética , Filogenia , Proteína 1 de Unión a la Caja Y/genética , Animales , Secuencia de Bases , Clonación Molecular , ADN Complementario , Expresión Génica , Sistemas de Lectura Abierta/genética , Alineación de Secuencia , Proteína 1 de Unión a la Caja Y/biosíntesis
14.
Genet Mol Res ; 14(2): 6808-18, 2015 Jun 18.
Artículo en Inglés | MEDLINE | ID: mdl-26125888

RESUMEN

Sugarcane smut, caused by the fungus Sporisorium scitamineum, is one of the main diseases that affect sugarcane worldwide. In the present study, the cDNA-SRAP technique was used to identify genes that are likely to be involved in the response of sugarcane to S. scitamineum infection. In total, 21 bands with significant differential expression during cDNA-SRAP analysis were cloned and sequenced. Real-time qPCR confirmation demonstrated that expression of 19 of these 21 differential bands was consistent with the expression observed during cDNA-SRAP analysis, with a deduced false positive rate of 9.5%. Sequence alignment indicated that 18 of 19 differentially expressed genes showed homologies from 19% to 100% to certain genes in GenBank, including the following genes: topoisomerase (EU048780), ethylene insensitive (EU048778), and tetraspanin (EU048770). A real-time qPCR assay showed that during 0-72 h after pathogen infection, expression of the topoisomerase and the ethylene insensitive genes was upregulated, whereas expression of the tetraspanin gene was downregulated, identical to the expression patterns observed under salicylic acid treatment. Therefore, all three genes are thought to play a role during S. scitamineum challenge, but with different functions. To our knowledge, this is the first report on the application of cDNA-SRAP in differential gene expression analysis of sugarcane during a sugarcane-S. scitamineum interaction. The results obtained also contribute to a better understanding of the molecular mechanisms associated with sugarcane-S. scitamineum interactions.


Asunto(s)
Regulación de la Expresión Génica de las Plantas , Enfermedades de las Plantas/genética , Proteínas de Plantas/genética , Reacción en Cadena en Tiempo Real de la Polimerasa/métodos , Saccharum/genética , Ustilaginales/crecimiento & desarrollo , Secuencia de Bases , Clonación Molecular , ADN-Topoisomerasas/genética , ADN-Topoisomerasas/inmunología , ADN-Topoisomerasas/metabolismo , ADN Complementario/genética , ADN Complementario/metabolismo , Perfilación de la Expresión Génica , Interacciones Huésped-Patógeno , Datos de Secuencia Molecular , Enfermedades de las Plantas/inmunología , Enfermedades de las Plantas/microbiología , Inmunidad de la Planta/genética , Proteínas de Plantas/inmunología , Proteínas de Plantas/metabolismo , Saccharum/inmunología , Saccharum/metabolismo , Saccharum/microbiología , Alineación de Secuencia , Análisis de Secuencia de ADN , Transducción de Señal , Estrés Fisiológico , Tetraspaninas/genética , Tetraspaninas/inmunología , Tetraspaninas/metabolismo , Ustilaginales/patogenicidad
15.
Genet Mol Res ; 14(3): 7894-909, 2015 Jul 14.
Artículo en Inglés | MEDLINE | ID: mdl-26214470

RESUMEN

Sugarcane smut caused by the fungus Sporisorium scitamineum is a worldwide disease and also one of the most prevalent diseases in sugarcane production in mainland China. To study molecular variation in S. scitamineum, 23 S. scitamineum isolates from the 6 primary sugar-cane production areas in mainland, China (Guangxi, Yunnan, Guangdong, Hainan, Fujian, and Jiangxi Provinces), were assessed using internal transcribed spacer (ITS) methods. The results of ITS sequence analysis showed that the organisms can be defined at the genus level, including Ustilago and Sporisorium, and can also differentiate between closely related species. This method was not suitable for phylogenetic relationship analysis of different S. scitamineum isolates and could not provide support regarding their race ascription at the molecular level. The results of the present study will be useful for studies examining the molecular diversity of S. scitamineum and for establishing a genetic foundation for their pathogenicity differentiation and new race detection. In addition, our results can provide useful information for the pathogen selection principle in sugarcane smut resistance breeding and variety distribution.


Asunto(s)
Basidiomycota/genética , ADN Espaciador Ribosómico/genética , Variación Genética , Composición de Base/genética , Secuencia de Bases , Basidiomycota/aislamiento & purificación , China , Análisis por Conglomerados , Datos de Secuencia Molecular , Mutación/genética , Filogenia , Enfermedades de las Plantas/microbiología , Reacción en Cadena de la Polimerasa , Saccharum/microbiología , Alineación de Secuencia
16.
Genet Mol Res ; 14(1): 1260-8, 2015 Feb 13.
Artículo en Inglés | MEDLINE | ID: mdl-25730064

RESUMEN

Cysteine-rich polycomb-like protein (CPP-like) genes are a group of transcription factors with highly conserved cysteine-rich domains and are widely distributed in animals and plants, but do not present in yeast. Previous studies have shown that members of this family play important roles in the development of reproductive tissue and in the control of cell division in plants. In this study, whole genome identification of soybean CPP transcription factors was performed using bioinformatic methods. The results showed that there were 20 CPP transcription factors in the soybean genome, which encoded for 28 distinct CPP proteins. These transcription factors were distributed on 16 of 20 chromosomes. Phylogenetic relationship analysis showed that expression of CPP gene family members occurred before the differentiation of monocotyledons and dicotyledons. RNA-Seq analysis showed that 5 genes were highly expressed in all tissues, including Glyma10g39080, Glyma01g44670, Glyma101g66920, Glyma02g01540, and Glyma20g28740. One gene (Glyma14g14750) was specifically expressed in young leaves, while 2 genes (Glyma02g01540 and Glyma10g01580) were highly expressed in root nodules. Quantitative reverse transcriptase-polymerase chain reaction analysis revealed that the expression levels of most genes increased in the roots under high temperature stress. Our findings indicate that these genes are not only involved in growth and development, but also in the responses to high temperature stress in soybean roots.


Asunto(s)
Genes de Plantas , Glycine max/genética , Familia de Multigenes , Arabidopsis/genética , Mapeo Cromosómico , Cromosomas de las Plantas/ultraestructura , ADN Complementario/metabolismo , Sequías , Evolución Molecular , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas , Estudios de Asociación Genética , Genómica , Filogenia , Proteínas de Plantas/genética , ARN/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Programas Informáticos , Glycine max/metabolismo , Factores de Transcripción/genética
17.
Genet Mol Res ; 13(4): 9766-76, 2014 Nov 27.
Artículo en Inglés | MEDLINE | ID: mdl-25501186

RESUMEN

The lymphotoxin beta receptor (LTßR) is a member of the tumor necrosis factor family of receptors (TNFR). It plays a role in regulating lymphoid organogenesis and homeostasis of the immune system. In the present study, the full coding region of a putative LTßR gene of Sus scrofa was amplified by reverse transcription-polymerase chain reaction (RT-PCR) and cloned for the first time (accession Nos. JX457347 and AFU74012). In addition, analysis of the tissue expression profile was carried out via RT-PCR. The full-length coding region of porcine LTßR had 1266 nucleotides (molecular weight, 45.61 kDa; pI, 5.71) and encoded 421 amino acids. Bioinformatic prediction indicates that LTßR belongs to the TNFR superfamily and contains a TNFR domain. The sequence homology analysis revealed that the amino acid sequences of S. scrofa LTßR had 82.9, 82.4, 81.3, 80.5, 78.7, 74.6, and 73.0% identity with those of Equus caballus, Canis lupus, Ailuropoda melanoleuca, Oryctolagus cuniculus, Bos taurus, Mus musculus, and Homo sapiens, respectively. The phylogenetic tree based on the amino acid sequences of LTßR from 8 species revealed that S. scrofa was more closely related to E. caballus, C. lupus, and A. melanoleuca. RT-PCR analysis showed that the porcine LTßR gene was differentially expressed (e.g., high, moderate, low, or nonexistent) in various tissues (e.g., prostate, pituitary, brainstem, and esophagus, respectively). This may be related to differences in the regulation of LTßR in the different tissues.


Asunto(s)
Clonación Molecular , Receptor beta de Linfotoxina/química , Sistemas de Lectura Abierta , Porcinos/genética , Secuencia de Aminoácidos , Animales , Tronco Encefálico/metabolismo , Bovinos , Perros , Esófago/metabolismo , Caballos , Humanos , Punto Isoeléctrico , Receptor beta de Linfotoxina/genética , Receptor beta de Linfotoxina/metabolismo , Masculino , Ratones , Datos de Secuencia Molecular , Peso Molecular , Especificidad de Órganos , Hipófisis/metabolismo , Próstata/metabolismo , Estructura Terciaria de Proteína , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Homología de Secuencia de Aminoácido , Porcinos/metabolismo , Ursidae
18.
Genet Mol Res ; 13(1): 1589-603, 2014 Mar 12.
Artículo en Inglés | MEDLINE | ID: mdl-24668633

RESUMEN

Single-walled carbon nanotubes (SWCNTs) have unique transmembrane abilities. The huge superficial area and abundance of π electrons confer SWCNTs perfect absorptive capability toward proteins, nucleates, and many drugs. These characteristics make SWCNTs a new and efficient drug carrier. The purpose of this study was to disperse SWCNTs in water and have paclitaxel absorbed onto them in order to construct an asparagine-glycine-arginine (NGR)-SWCNT-Paclitaxel complex as a targeting nanoparticle system. The NGR-SWCNT-Paclitaxel complex was systematically studied, and analytical methods, including spectrophotometry for SWCNTs and high-performance liquid chromatography for paclitaxel, were employed. The preparation and the prescription of the NGR-SWCNT-Paclitaxel complex lyophilized powder were investigated. MCF-7 cancer cells, Sprague-Dawley rats, and S180 tumor-bearing mice were used as experimental subjects to evaluate the in vitro and in vivo activity of NGR-SWCNT-Paclitaxel complex dispersion. The complex dispersion showed obvious inhibition activity against MCF-7 cancer cells. Within 1 h, the NGR-SWCNT-Paclitaxel complex could be transferred to cells, and sustained the release of drugs. In addition, the tumor and liver targeting and improved therapeutic effects of the NGR-SWCNT-Paclitaxel complex were confirmed.


Asunto(s)
Sistemas de Liberación de Medicamentos , Nanotubos de Carbono/química , Paclitaxel/administración & dosificación , Animales , Humanos , Ratones , Paclitaxel/química , Ratas , Agua
19.
Genet Mol Res ; 12(4): 5257-66, 2013 Oct 30.
Artículo en Inglés | MEDLINE | ID: mdl-24301786

RESUMEN

The aim of this study was to explore the changes in gene and protein expressions of tyrosine hydroxylase (TH) and growth-associated protein 43 (GAP43) in aging atrial fibrillation patients of Xinjiang Uygur and Han nationality, and the significance of the changes. Real-time polymerase chain reaction and Western blot analysis were used to detect gene and protein expressions of TH and GAP43 in atrial tissues of 54 patients with valvular heart disease. mRNA and protein expressions of GAP43 and TH were significantly different between the sinus rhythm and atrial fibrillation groups (P < 0.05). Protein expressions of GAP43 and TH of both nationalities differed significantly between the sinus rhythm group and the atrial fibrillation group (P < 0.05), whereas there was no statistical difference between the two nationalities within each group (P > 0.05). Protein expressions of GAP43 and TH differed significantly among different age groups of different nationalities in the sinus rhythm and atrial fibrillation groups (P < 0.05); only protein expression of GAP43 differed significantly in different age groups in the atrial fibrillation group (P < 0.05). The changes of mRNA and protein expressions of TH and GAP43 played a vital role in the process of maintaining the atrial fibrillation. Therefore, increased expression of TH and GAP43 might be a molecular mechanism for left atrial myoelectricity remodeling of aging atrial fibrillation patients, which might be potential therapeutic targets of atrial fibrillation.


Asunto(s)
Fibrilación Atrial/genética , Etnicidad/genética , Proteína GAP-43/genética , Expresión Génica , Tirosina 3-Monooxigenasa/genética , Adulto , Anciano , Fibrilación Atrial/metabolismo , Estudios de Casos y Controles , China , Femenino , Proteína GAP-43/metabolismo , Humanos , Masculino , Persona de Mediana Edad , Factores de Riesgo , Tirosina 3-Monooxigenasa/metabolismo
20.
Genet Mol Res ; 12(3): 3643-50, 2013 Sep 13.
Artículo en Inglés | MEDLINE | ID: mdl-24085428

RESUMEN

Apolipoprotein A5 (APOA5) and C3 (APOC3) genes are involved in the PPAR lipid metabolism pathway and thus associated with elevated triglyceride levels. However, whether APOA5 and APOC3 genetic polymorphisms affect intramuscular fat deposition and other meat quality traits remains unknown in pigs. One hundred and seventy-one Kele pigs were sampled to investigate genetic variants in the APOA5 and APOC3 genes and their association with seven pork quality traits. We identified 5 single nucleotide polymorphisms (SNPs) in the promoter region of the APOA5 gene and 17 SNPs in the APOC3 gene. Linkage disequilibrium analysis revealed 5 complete linkage disequilibria among these 22 SNPs. We found that 10 SNPs were significantly correlated with meat quality traits, including the mutation A5/-769 in the APOA5 gene, which was significantly associated with cooked weight percentage, and 9 SNPs in the APOC3 gene that were significantly associated with drip loss rate, meat color value of longissimus dorsi muscle and shear force. Therefore, these SNP markers will be useful for marker-assisted selection for improved pork quality.


Asunto(s)
Apolipoproteínas A/genética , Apolipoproteínas C/genética , Carne/análisis , Polimorfismo de Nucleótido Simple , Sitios de Carácter Cuantitativo , Sus scrofa/genética , Animales , Calidad de los Alimentos , Frecuencia de los Genes , Desequilibrio de Ligamiento , Fenotipo , Triglicéridos
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