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1.
Nat Commun ; 15(1): 7281, 2024 Aug 23.
Artículo en Inglés | MEDLINE | ID: mdl-39179607

RESUMEN

Membrane active peptides are known to porate lipid bilayers, but their exact permeabilization mechanism and the structure of the nanoaggregates they form in membranes have often been difficult to determine experimentally. For many sequences at lower peptide concentrations, transient leakage is observed in experiments, suggesting the existence of transient pores. For two well-know peptides, alamethicin and melittin, we show here that molecular mechanics simulations i) can directly distinguish equilibrium poration and non-equilibrium transient leakage processes, and ii) can be used to observe the detailed pore structures and mechanism of permeabilization in both cases. Our results are in very high agreement with numerous experimental evidence for these two peptides. This suggests that molecular simulations can capture key membrane poration phenomena directly and in the future may develop to be a useful tool that can assist experimental peptide design.


Asunto(s)
Membrana Dobles de Lípidos , Meliteno , Simulación de Dinámica Molecular , Meliteno/química , Meliteno/metabolismo , Membrana Dobles de Lípidos/metabolismo , Membrana Dobles de Lípidos/química , Alameticina/química , Alameticina/metabolismo , Permeabilidad de la Membrana Celular , Permeabilidad
2.
Nanoscale ; 16(34): 15984-15994, 2024 Aug 29.
Artículo en Inglés | MEDLINE | ID: mdl-39141323

RESUMEN

The presence of non-essential metals in the environment as contaminants is prone to cause hazardous health problems following accumulation in the human body and the ensuing toxic effects. This calls for continuous discovery and innovation in the realm of developing easy-to-operate, cheap and sensitive sensors. Herein, we describe the proof of concept approach for designing a molecular receptor-like, chimeric sensor based on the pore-forming peptide alamethicin (Alm), tethered via a linker with an ultrashort peptide nucleic acid (PNA) moiety, capable of generating functional ion channel oligomers in planar lipid membranes. The working principle of the sensor exploits the ability of Hg2+ ions to complex mismatching thymine-thymine sequences between the PNA receptor moiety on Alm oligomers and free, thymine-based, single-stranded DNAs (ssDNAs) in solution, thus creating a stable base pair at the oligomer entrance. This generates a transducing mechanism which converts the metal ion complexation into a specific electrical signature of the self-assembled Alm oligomers, enabling selective Hg2+ ion detection. The platform is programmable, whereby the simple exchange of the PNA sequence and its ssDNA counterpart in solution rendered the system selective for Cu2+ ion detection. With further optimization, the presented solution has the potential to translate into miniaturized, cost-effective biosensors suitable for the real-time, label-free and continuous detection of metal ions or other biomolecules.


Asunto(s)
Cobre , ADN de Cadena Simple , Mercurio , Ácidos Nucleicos de Péptidos , Mercurio/análisis , Mercurio/química , Ácidos Nucleicos de Péptidos/química , Cobre/química , ADN de Cadena Simple/química , Alameticina/química , Canales Iónicos/metabolismo , Canales Iónicos/química , Técnicas Biosensibles , Péptidos Antimicrobianos/química , Péptidos Antimicrobianos/farmacología , Iones/química
3.
Eur Biophys J ; 53(5-6): 267-276, 2024 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-38849514

RESUMEN

Alamethicin, a peptide consisted of 20 amino acid residues, has been known to function as an antibiotic. The peptides self-associate in biological membranes, form an ion channel, and then induce cell death by leaking intracellular contents through a transmembrane pore of an ion channel. We investigated conformation and its thermal stability of alamethicin-A6 and -U6 in ethanol using proton nuclear magnetic resonance (NMR) spectroscopy; alamethicin-A6 and -U6 have the amino acid sequences of UPUAUAQUVUGLUPVUUQQO and UPUAUUQUVUGLUPVUUQQO, respectively, where U and O represent α-aminoisobutyric acid and phenylalaninol, respectively. As indicated by the under bars in the sequences, only the residue 6 differs between the alamethicins. We show that the alamethicins in ethanol form helix conformation in the region of the residues 2-11 and a non-regular conformation in the regions of the N- and C-termini, and that the helices are maintained up to 66 °C at least. Conformations in the region of the residues 12-18 of the alamethicins, however, are not well identified due to the lack of NMR data. In addition, we demonstrate that the amide proton chemical shift temperature coefficients' method, which is known as an indicator for intramolecular hydrogen bonds in peptides and proteins in aqueous solutions, can be also applied to the alamethicins in ethanol. Further, we show that the conformation around the C-terminus of alamethicin-A6 is restrained by intramolecular hydrogen bonds, whereas that of alamethicin-U6 is either restrained or unrestrained by intramolecular hydrogen bonds; the alamethicin-U6 molecules having the restrained and unrestrained conformations coexist in ethanol. We discuss the two types of conformations using a model chain consisting of particles linked by rigid bonds called as the free jointed chain.


Asunto(s)
Alameticina , Etanol , Espectroscopía de Resonancia Magnética , Alameticina/química , Etanol/química , Conformación Proteica , Secuencia de Aminoácidos , Temperatura
4.
Biophys J ; 122(12): 2531-2543, 2023 06 20.
Artículo en Inglés | MEDLINE | ID: mdl-37161094

RESUMEN

Transmembrane assemblies of the peptaibol alamethicin (ALM) are among the most extensively studied ion channels not only because of their antimicrobial activity but also as models for channel structure and aggregation. In this study, several oligomeric states of ALM are investigated with molecular dynamics simulations to establish properties of the channel and obtain free energy profiles for ion transport and the corresponding values of conductance. The hexamer, heptamer, and octamer of ALM in phospholipid membrane are found to be stable but highly dynamic in barrel-stave structures, with calculated conductance equal to 18, 195, and 1270 pS, respectively, in 1 M KCl ion solution. The corresponding free energy profiles, reported for the first time, are reconstructed from simulations at applied voltage of 200 mV with the aid of the electrodiffusion model both with and without the knowledge of diffusivity. The calculated free energy barriers are equal to 2.5, 1.5, and 0.5 kcal/mol for K+ and 4.0, 2.2, and 1.5 kcal/mol for Cl-, for hexamer, heptamer, and octamer, respectively. The calculated conductance and the ratio between conductance in consecutive states are in good agreement with those measured experimentally. This suggests that the hexamer is the lowest conducting state, with measured conductance equal to 19 pS. The selectivity of K+ over Cl- is calculated as 1.5 and 2.3 for the octameric and heptameric channels, close to the selectivity measured for high-conductance states. Selectivity increases to 13 in the hexameric channel in which the narrowest Gln7 site has a pore radius of only ∼1.6 Å, again in accord with experiment. A good agreement found between calculated and measured conductance through a hexamer templated on cyclodextrin lands additional support for the results of our simulations, and the comparison with ALM reveals the dependence of conductance on the nature of phospholipid membrane.


Asunto(s)
Alameticina , Canales Iónicos , Alameticina/química , Simulación de Dinámica Molecular , Peptaiboles , Fosfolípidos
5.
J Pept Sci ; 29(8): e3479, 2023 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-36652104

RESUMEN

Peptaibols are naturally occurring, antimicrobial peptides endowed with well-defined helical conformations and resistance to proteolysis. Both features stem from the presence in their sequence of several, Cα -tetrasubstituted, α-aminoisobutyric acid (Aib) residues. Peptaibols interact with biological membranes, usually causing their leakage. All of the peptaibol-membrane interaction mechanisms proposed so far begin with peptide aggregation or accumulation. The long-length alamethicin, the most studied peptaibol, acts by forming pores in the membranes. Conversely, the carpet mechanism has been claimed for short-length peptaibols, such as trichogin. The mechanism of medium-length peptaibols is far less studied, and this is partly due to the difficulties of their synthesis. They are believed to perturb membrane permeability in different ways, depending on the membrane properties. The present work focuses on pentadecaibin, a recently discovered, medium-length peptaibol. In contrast to the majority of its family members, its sequence does not comprise hydroxyprolines or prolines, and its helix is not kinked. A reliable and effective synthesis procedure is described that allowed us to produce also two shorter analogs. By a combination of techniques, we were able to establish a 3D-structure-activity relationship. In particular, the membrane activity of pentadecaibin heavily depends on the presence of three consecutive Aib residues that are responsible for the clear, albeit modest, amphiphilic character of its helix. The shortest analog, devoid of two of these three Aib residues, preserves a well-defined helical conformation, but not its amphipathicity, and loses almost completely the ability to cause membrane leakage. We conclude that pentadecaibin amphiphilicity is probably needed for the peptide ability to perturb model membranes.


Asunto(s)
Alameticina , Peptaiboles , Peptaiboles/análisis , Peptaiboles/química , Peptaiboles/metabolismo , Alameticina/análisis , Alameticina/química , Alameticina/metabolismo , Membrana Celular/química , Conformación Molecular , Transporte Biológico , Antibacterianos/farmacología , Antibacterianos/química
6.
Langmuir ; 38(27): 8398-8406, 2022 07 12.
Artículo en Inglés | MEDLINE | ID: mdl-35749587

RESUMEN

The inhibition effect of amiloride on alamethicin ion channels was studied in a model zwitterionic floating bilayer lipid membrane (fBLM). The EIS studies indicated that amiloride prevents the transport of ions through the alamethicin channels leading to an overall increase in membrane resistance. The PM-IRRAS data demonstrated that amiloride has no influence on the secondary structure of alamethicin but restricts the insertion of the peptides into the bilayer and blocks ion transport through preformed alamethicin channels. The effect of amiloride on ion channel formation in the floating bilayer formed by a zwitterionic lipid was compared to those of previous studies involving negatively charged fBLMs and tethered zwitterionic lipid bilayers. The findings from these studies show that the effects of amiloride on ion channel formation strongly depend on the mobility and charge of the membrane lipids.


Asunto(s)
Alameticina , Amilorida , Alameticina/química , Alameticina/farmacología , Amilorida/farmacología , Canales Iónicos/química , Iones , Membrana Dobles de Lípidos/química , Fosfolípidos
7.
J Phys Chem Lett ; 12(7): 1786-1792, 2021 Feb 25.
Artículo en Inglés | MEDLINE | ID: mdl-33576633

RESUMEN

The structures of many membrane-bound proteins and polypeptides depend on the membrane potential. However, spectroscopically studying their structures under an applied field is challenging, because a potential is difficult to generate across more than a few bilayers. We study the voltage-dependent structures of the membrane-bound polypeptide, alamethicin, using a spectroelectrochemical cell coated with a rough, gold film to create surface plasmons. The plasmons sufficiently enhance the 2D IR signal to measure a single bilayer. The film is also thick enough to conduct current and thereby apply a potential. The 2D IR spectra resolve features from both 310- and α-helical structures and cross-peaks connecting the two. We observe changes in the peak intensity, not their frequencies, upon applying a voltage. A similar change occurs with pH, which is known to alter the angle of alamethicin relative to the surface normal. The spectra are modeled using a vibrational exciton Hamiltonian, and the voltage-dependent spectra are consistent with a change in angle of the 310- and α-helices in the membrane from 55 to 44°and from 31 to 60°, respectively. The 310- and α-helices are coupled by approximately 10 cm-1. These experiments provide new structural information about alamethicin under a potential difference and demonstrate a technique that might be applied to voltage-gated membrane proteins and compared to molecular dynamics structures.


Asunto(s)
Alameticina/química , Refuerzo Biomédico/métodos , Proteínas de la Membrana/química , Secuencia de Aminoácidos , Membrana Dobles de Lípidos/química , Potenciales de la Membrana , Simulación de Dinámica Molecular , Conformación Proteica , Espectrofotometría Infrarroja , Propiedades de Superficie , Vibración
8.
Eur Biophys J ; 49(1): 113-124, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31912177

RESUMEN

Alamethicin is an antibiotic peptide comprising 20 amino acid residues and functions as an ion channel in biological membranes. Natural alamethicins have a variety of amino acid sequences. Two of them, used as a mixed sample in this study, are: UPUAUAQUVUGLUPVUUQQO and UPUAUUQUVUGLUPVUUQQO, where U and O represent α-aminoisobutyric acid and phenylalaninol, respectively. As indicated, only the amino acid at position six differs, and the two alamethicins are referred to as alamethicin-A6 and -U6, respectively. The conformation and thermal stability of alamethicin-A6 and -U6 in methanol were examined using proton nuclear magnetic resonance (NMR) spectroscopy. Both alamethicins form an α-helix between the 2nd and 11th residues. The N-terminal, 19th and C-terminal residues take a non-helical conformation. The structure between the 12th and 18th residues has not been well determined due to the absence of cross peaks in the two-dimensional NMR data. The α-helices are maintained up to 54 °C at least. In contrast to these similarities, it has been found that the length of the α-helix of alamethicin-U6 is somewhat shorter than that of alamethicin-A6, the intra-molecular hydrogen bonds formed by the amide proton of the seventh residue is much more thermally stable for alamethicin-U6 than for alamethicin-A6, and the C-terminal residue of alamethicin-U6 has higher mobility than that of alamethicin-A6. The mobility of the N- and C-terminal residues is discussed on the basis of a model chain which consists of particles connected by rigid links, and the physiological significance of the mobility is emphasized.


Asunto(s)
Alameticina/química , Simulación de Dinámica Molecular , Enlace de Hidrógeno , Metanol/química , Conformación Proteica , Estabilidad Proteica , Espectroscopía de Protones por Resonancia Magnética
9.
Biochim Biophys Acta Biomembr ; 1861(1): 335-343, 2019 01.
Artículo en Inglés | MEDLINE | ID: mdl-30006208

RESUMEN

The droplet interface bilayer (DIB) method offers simple control over initial leaflet compositions in model membranes, enabling an experimental path to filling gaps in our knowledge about the interplay between compositional lipid asymmetry, membrane properties, and the behaviors of membrane-active species. Yet, the stability of lipid leaflet asymmetry in DIBs has received very little attention, particularly in the presence of peptides and ion channels that are often studied in DIBs. Herein, we demonstrate for the first time parallel, capacitance-based measurements of intramembrane potential with arrays of asymmetric DIBs assembled in a microfluidic device to characterize the stability of leaflet asymmetry over many hours in the presence and absence of membrane-active peptides. DIBs assembled from opposing monolayers of the ester (DPhPC) and ether (DOPhPC) forms of diphytanoyl-phosphatidylcholine yielded asymmetric bilayers with leaflet compositions that were stable for at least 18 h as indicated by a stable |137 mV| intramembrane potential. In contrast, the addition of surface-bound alamethicin peptides caused a gradual, concentration-dependent decrease in the magnitude of the dipole potential difference. Intermittent current-voltage measurements revealed that alamethicin in asymmetric DIBs also shifts the threshold voltage required to drive peptide insertion and ion channel formation. These outcomes take place over the course of 1 to 5 h after membrane formation, and suggest that alamethicin peptides promote lipid flip-flop, even in the un-inserted, surface-bound state, by disordering lipids in the monolayer to which they bind. Moreover, this methodology establishes the use of parallel electrophysiology for efficiently studying membrane asymmetry in arrays of DIBs.


Asunto(s)
Alameticina/química , Fenómenos Electrofisiológicos , Membrana Dobles de Lípidos/química , Capacidad Eléctrica , Electrodos , Canales Iónicos/química , Dispositivos Laboratorio en un Chip , Lípidos/química , Potenciales de la Membrana , Péptidos/química , Fosfatidilcolinas , Propiedades de Superficie , Agua/química
10.
Langmuir ; 34(45): 13754-13765, 2018 11 13.
Artículo en Inglés | MEDLINE | ID: mdl-30265810

RESUMEN

Electrochemical impedance spectroscopy (EIS), atomic force microscopy (AFM), and photon polarization modulation infrared reflection absorption spectroscopy (PM-IRRAS) were employed to investigate the formation of alamethicin pores in negatively charged bilayers composed of a mixture of 1,2-dimyristoyl- sn-glycero-3-phosphocholine (DMPC) and egg-PG floating at gold (111) electrode surfaces modified by self-assembled monolayers of 1-thio-ß-d-glucose (ß-Tg). The EIS data showed that the presence of alamethicin decreases the membrane resistivity by about 1 order of magnitude. PM-IRRAS measurements provided information about the tilt angles of peptide helical axis with respect to the bilayer normal. The small tilt angles obtained for the peptide helical axis prove that the alamethicin molecules were inserted into the DMPC/egg-PG membranes. The tilt angles decreased when negative potentials were applied, which correlates with the observed decrease in membrane resistivity, indicating that ion pore formation is assisted by the transmembrane potential. Molecular resolution AFM images provided visual evidence that alamethicin molecules aggregate forming hexagonal porous 2D lattices with periodicities of 2.0 ± 0.2 nm. The pore formation by alamethicin in the negatively charged membrane was compared with the interaction of this peptide with a bilayer formed by zwitterionic lipids. The comparison of these results showed that alamethicin preferentially forms ion translocating pores in negatively charged phospholipid membranes.


Asunto(s)
Alameticina/química , Oro/química , Membrana Dobles de Lípidos/química , Nanoporos , Animales , Pollos , Espectroscopía Dieléctrica , Dimiristoilfosfatidilcolina/química , Electrodos , Microscopía de Fuerza Atómica , Fosfatidilgliceroles/química , Espectrofotometría Infrarroja/métodos
11.
PLoS One ; 13(4): e0194179, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29649223

RESUMEN

Niosomes are used in studies for drug delivery or gene transfer. However, their physical properties and features relative to liposomes are not well documented. To characterize and more rationally optimize niosome formulations, the properties of these vesicle systems are compared to those of liposomes composed of phosphatidylcholine and phosphatidylethanolamine lipids plus cholesterol. Niosomes are highly stable and only slightly more leaky than liposomes as assayed by calcein leakage; the permeability for ions (KCl) is higher than that of liposomes. Contrary to liposomes, the size of niosomes decreases substantially upon freezing in liquid nitrogen and subsequent thawing, as shown by cryo-EM and dynamic light scattering. The packing of niosomal membranes was determined by laurdan fluorescence and is slightly lower than that of liposomes. We did not succeed in the functional reconstitution of the L-arginine/L-ornithine antiporter ArcD2 in niosomes, which we attribute to the non-ionic nature of the surfactants. The antimicrobial peptides alamethicin and melittin act similarly on niosomes and liposomes composed of unsaturated components, whereas both niosomes and liposomes are unaffected when saturated amphiphiles are used. In conclusion, in terms of stability and permeability for drug-size molecules niosomes are comparable to liposomes and they may offer an excellent, inexpensive alternative for delivery purposes.


Asunto(s)
Sistemas de Liberación de Medicamentos , Lípidos/química , Liposomas/química , Fosfatidiletanolaminas/química , 1,2-Dipalmitoilfosfatidilcolina/química , Alameticina/química , Péptidos Catiónicos Antimicrobianos/química , Arginina/química , Colesterol/química , Microscopía por Crioelectrón , Detergentes/química , Fluoresceínas/química , Hexosas/química , Luz , Meliteno/química , Nitrógeno/química , Ornitina/química , Ósmosis , Permeabilidad , Polisorbatos/química , Dispersión de Radiación , Tensoactivos
12.
Langmuir ; 34(6): 2373-2385, 2018 02 13.
Artículo en Inglés | MEDLINE | ID: mdl-29353482

RESUMEN

Antimicrobial peptides (AMPs) are the first line of defense after contact of an infectious invader, for example, bacterium or virus, with a host and an integral part of the innate immune system of humans. Their broad spectrum of biological functions ranges from cell membrane disruption over facilitation of chemotaxis to interaction with membrane-bound or intracellular receptors, thus providing novel strategies to overcome bacterial resistances. Especially, the clarification of the mechanisms and dynamics of AMP incorporation into bacterial membranes is of high interest, and different mechanistic models are still under discussion. In this work, we studied the incorporation of the peptaibol alamethicin (ALM) into tethered bilayer lipid membranes on electrodes in combination with surface-enhanced infrared absorption (SEIRA) spectroscopy. This approach allows monitoring the spontaneous and potential-induced ion channel formation of ALM in situ. The complex incorporation kinetics revealed a multistep mechanism that points to peptide-peptide interactions prior to penetrating the membrane and adopting the transmembrane configuration. On the basis of the anisotropy of the backbone amide I and II infrared absorptions determined by density functional theory calculations, we employed a mathematical model to evaluate ALM reorientations monitored by SEIRA spectroscopy. Accordingly, ALM was found to adopt inclination angles of ca. 69°-78° and 21° in its interfacially adsorbed and transmembrane incorporated states, respectively. These orientations can be stabilized efficiently by the dipolar interaction with lipid head groups or by the application of a potential gradient. The presented potential-controlled mechanistic study suggests an N-terminal integration of ALM into membranes as monomers or parallel oligomers to form ion channels composed of parallel-oriented helices, whereas antiparallel oligomers are barred from intrusion.


Asunto(s)
Alameticina/química , Membrana Dobles de Lípidos/química , Membrana Celular , Cinética , Modelos Teóricos
13.
Phys Chem Chem Phys ; 20(5): 3592-3601, 2018 Jan 31.
Artículo en Inglés | MEDLINE | ID: mdl-29340383

RESUMEN

The antimicrobial action of the peptide antibiotic alamethicin (Alm) is commonly related to peptide self-assembling resulting in the formation of voltage-dependent channels in bacterial membranes, which induces ion permeation. To obtain a deeper insight into the mechanism of channel formation, it is useful to know the dependence of self-assembling on peptide concentration. With this aim, we studied Alm F50/5 spin-labeled analogs in a model 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) membrane, for peptide-to-lipid (P/L) ratios varying between 1/1500 and 1/100. Pulsed electron-electron double resonance (PELDOR) spectroscopy reveals that even at the lowest concentration investigated, the Alm molecules assemble into dimers. Moreover, under these conditions, electron spin echo envelope modulation (ESEEM) spectroscopy of D2O-hydrated membranes shows an abrupt change from the in-plane to the trans-membrane orientation of the peptide. Therefore, we hypothesize that dimer formation and peptide reorientation are concurrent processes and represent the initial step of peptide self-assembling. By increasing peptide concentration, higher oligomers are formed. A simple kinetic model of equilibrium among monomers, dimers, and pentamers allows for satisfactorily describing the experimental PELDOR data. The inter-label distances in the oligomers obtained from PELDOR experiments become better resolved with increasing P/L ratio, thus suggesting that the supramolecular organization of the higher-order oligomers becomes more defined.


Asunto(s)
Alameticina/química , Membrana Dobles de Lípidos/química , Alameticina/metabolismo , Secuencia de Aminoácidos , Dimerización , Espectroscopía de Resonancia por Spin del Electrón , Cinética , Membrana Dobles de Lípidos/metabolismo , Fosfatidilcolinas/química , Marcadores de Spin , Agua/química
14.
J Phys Chem B ; 122(13): 3219-3229, 2018 04 05.
Artículo en Inglés | MEDLINE | ID: mdl-29320189

RESUMEN

All-atom molecular dynamics (MD) simulations are performed to examine the stabilities of a variety of binding configurations of alamethicin, a 20-amino-acid amphipathic peptide, in the bilayers of 1-palmitoyl-2-oleoyl phosphatidylcholine (POPC) and 1,2-dimyristoyl- sn-glycero-3-phosphatidylcholine (DMPC). The binding free energy of alamethicin is calculated through a combination of MD simulation and the energy-representation theory of solutions, and it is seen that the transmembrane configuration is stable in both membranes. A surface-bound state is also found to be stable due to the balance between the attractive and repulsive interactions of the peptide with lipid and water, and the key role of water is pointed out for the stability in the interfacial region. A difference between the POPC and DMPC systems is noted when the polar C-terminal domain is buried in the hydrophobic region of the membrane. In POPC, the peptide is unfavorably located with that configuration due to the loss of electrostatic interaction between the peptide and lipid.


Asunto(s)
Alameticina/química , Membrana Dobles de Lípidos/química , Simulación de Dinámica Molecular , Termodinámica , Sitios de Unión , Soluciones
15.
J Chem Phys ; 146(1): 011103, 2017 Jan 07.
Artículo en Inglés | MEDLINE | ID: mdl-28063425

RESUMEN

Alamethicin (Alm) is a 19-mer antimicrobial peptide produced by fungus Trichoderma viride. Above a threshold concentration, Alm forms pores across the membrane, providing a mechanism of its antimicrobial action. Here we show that at a small concentration which is below the threshold value, Alm participates in formation of nanoscale lipid-mediated clusters of guest lipid-like molecules in the membrane. These results are obtained by electron spin echo (ESE) technique-a pulsed version of electron paramagnetic resonance-on spin-labeled stearic acid in a 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine bilayer with Alm added at 1/200 peptide-to-lipid ratio. ESE decay measurements are interpreted assuming that stearic acid molecules in the membrane are assembling around the Alm molecule. One may suggest that this Alm capturing effect on the guest lipid-like molecules could be important for the peptide antimicrobial action.


Asunto(s)
Alameticina/farmacología , Membrana Celular/efectos de los fármacos , Membrana Celular/metabolismo , Fosfatidilcolinas/metabolismo , Alameticina/química , Secuencia de Aminoácidos , Espectroscopía de Resonancia por Spin del Electrón , Fosfatidilcolinas/química , Temperatura
16.
Biophys J ; 111(11): 2450-2459, 2016 Dec 06.
Artículo en Inglés | MEDLINE | ID: mdl-27926846

RESUMEN

Alamethicins (ALMs) are antimicrobial peptides of fungal origin. Their sequences are rich in hydrophobic amino acids and strongly interact with lipid membranes, where they cause a well-defined increase in conductivity. Therefore, the peptides are thought to form transmembrane helical bundles in which the more hydrophilic residues line a water-filled pore. Whereas the peptide has been well characterized in terms of secondary structure, membrane topology, and interactions, much fewer data are available regarding the quaternary arrangement of the helices within lipid bilayers. A new, to our knowledge, fluorine-labeled ALM derivative was prepared and characterized when reconstituted into phospholipid bilayers. As a part of these studies, C19F3-labeled compounds were characterized and calibrated for the first time, to our knowledge, for 19F solid-state NMR distance and oligomerization measurements by centerband-only detection of exchange (CODEX) experiments, which opens up a large range of potential labeling schemes. The 19F-19F CODEX solid-state NMR experiments performed with ALM in POPC lipid bilayers and at peptide/lipid ratios of 1:13 are in excellent agreement with molecular-dynamics calculations of dynamic pentameric assemblies. When the peptide/lipid ratio was lowered to 1:30, ALM was found in the dimeric form, indicating that the supramolecular organization is tuned by equilibria that can be shifted by changes in environmental conditions.


Asunto(s)
Alameticina/química , Antibacterianos/química , Membrana Celular/química , Secuencia de Aminoácidos , Membrana Celular/metabolismo , Fenómenos Electrofisiológicos , Espectroscopía de Resonancia Magnética , Fosfatidilcolinas/metabolismo , Multimerización de Proteína
17.
Nat Commun ; 7: 12981, 2016 10 07.
Artículo en Inglés | MEDLINE | ID: mdl-27713411

RESUMEN

In biological systems, intercellular communication is mediated by membrane proteins and ion channels that regulate traffic of ions and small molecules across cell membranes. A bioelectronic device with ion channels that control ionic flow across a supported lipid bilayer (SLB) should therefore be ideal for interfacing with biological systems. Here, we demonstrate a biotic-abiotic bioprotonic device with Pd contacts that regulates proton (H+) flow across an SLB incorporating the ion channels Gramicidin A (gA) and Alamethicin (ALM). We model the device characteristics using the Goldman-Hodgkin-Katz (GHK) solution to the Nernst-Planck equation for transport across the membrane. We derive the permeability for an SLB integrating gA and ALM and demonstrate pH control as a function of applied voltage and membrane permeability. This work opens the door to integrating more complex H+ channels at the Pd contact interface to produce responsive biotic-abiotic devices with increased functionality.


Asunto(s)
Alameticina/química , Membrana Celular/metabolismo , Gramicidina/química , Canales Iónicos/química , Iones/metabolismo , Transporte Biológico/fisiología , Conductividad Eléctrica , Concentración de Iones de Hidrógeno , Membrana Dobles de Lípidos/química , Potenciales de la Membrana/fisiología , Permeabilidad , Protones , Dispositivos Electrónicos Vestibles
18.
Biophys J ; 111(6): 1248-1257, 2016 Sep 20.
Artículo en Inglés | MEDLINE | ID: mdl-27653483

RESUMEN

An all-atom molecular dynamics simulation of the archetype barrel-stave alamethicin (alm) pore in a 1,2-dioleoyl-sn-glycero-3-phosphocholine bilayer at 313 K indicates that ∼7 µs is required for equilibration of a preformed 6-peptide pore; the pore remains stable for the duration of the remaining 7 µs of the trajectory, and the structure factors agree well with experiment. A 5 µs simulation of 10 surface-bound alm peptides shows significant peptide unfolding and some unbinding, but no insertion. Simulations at 363 and 413 K with a -0.2 V electric field yield peptide insertion in 1 µs. Insertion is initiated by the folding of residues 3-11 into an α-helix, and mediated by membrane water or by previously inserted peptides. The stability of five alm pore peptides at 413 K with a -0.2 V electric field demonstrates a significant preference for a transmembrane orientation. Hence, and in contrast to the cationic antimicrobial peptide described in the following article, alm shows a strong preference for the inserted over the surface-bound state.


Asunto(s)
Alameticina/química , Antibacterianos/química , Membrana Dobles de Lípidos/química , Alameticina/metabolismo , Animales , Antibacterianos/metabolismo , Péptidos Catiónicos Antimicrobianos/química , Campos Electromagnéticos , Proteínas de Peces/química , Peces , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Glicerilfosforilcolina/análogos & derivados , Glicerilfosforilcolina/química , Interacciones Hidrofóbicas e Hidrofílicas , Simulación de Dinámica Molecular , Fosfatidilcolinas , Unión Proteica , Conformación Proteica en Hélice alfa , Pliegue de Proteína , Trichoderma , Viscosidad
19.
Biochim Biophys Acta ; 1858(4): 725-32, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26777771

RESUMEN

Alamethicin is a well-studied antimicrobial peptide (AMP) that kills Gram-positive bacteria. It forms narrow, barrel-stave pores in planar lipid bilayers. We present a detailed, time-resolved microscopy study of the sequence of events during the attack of alamethicin on individual, live Bacillus subtilis cells expressing GFP in the cytoplasm. At the minimum inhibitory concentration (MIC), the first observed symptom is the halting of growth, as judged by the plateau in measured cell length vs time. The data strongly suggest that this growth-halting event occurs prior to membrane permeabilization. Gradual degradation of the proton-motive force, inferred from a decrease in pH-dependent GFP fluorescence intensity, evidently begins minutes later and continues over about 5 min. There follows an abrupt permeabilization of the cytoplasmic membrane to the DNA stain Sytox Orange and concomitant loss of small osmolytes, causing observable cell shrinkage, presumably due to decreased turgor pressure. This permeabilization of the cytoplasmic membrane occurs uniformly across the entire membrane, not locally, on a timescale of 5s or less. GFP gradually leaks out of the cell envelope, evidently impeded by the shrunken peptidoglycan layer. Disruption of the cell envelope by alamethicin occurs in stages, with larger and larger species permeating the envelope as time evolves over tens of minutes. Some of the observed symptoms are consistent with the formation of barrel-stave pores, but the data do not rule out "chaotic pore" or "carpet" mechanisms. We contrast the effects of alamethicin and the human cathelicidin LL-37 on B. subtilis.


Asunto(s)
Alameticina/farmacología , Antiinfecciosos/química , Bacillus subtilis/efectos de los fármacos , Membrana Celular/efectos de los fármacos , Alameticina/química , Antiinfecciosos/farmacología , Péptidos Catiónicos Antimicrobianos , Bacillus subtilis/patogenicidad , Humanos , Membrana Dobles de Lípidos/química , Imagen Molecular , Análisis de la Célula Individual
20.
Org Lett ; 17(18): 4498-501, 2015 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-26347940

RESUMEN

A concise synthetic pathway yielding to hydrophobic α,α-disubstituted disilylated amino acids based on a hydrosilylation reaction is described. As a first example of utilization in solid-phase peptide synthesis, TESDpg was introduced in replacement of Aib in an alamethicin sequence, leading to analogues with modified physicochemical properties and conserved helical structures. This study highlights the potential of these new amino acids as tools for peptide modulation.


Asunto(s)
Aminoácidos/síntesis química , Péptidos/síntesis química , Silanos/síntesis química , Técnicas de Síntesis en Fase Sólida , Alameticina/química , Aminoácidos/química , Estructura Molecular , Péptidos/química , Silanos/química , Estereoisomerismo
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