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1.
J Agric Food Chem ; 70(44): 14247-14254, 2022 Nov 09.
Artículo en Inglés | MEDLINE | ID: mdl-36302508

RESUMEN

l-Aspartate is an important chemical in the food and pharmaceutical industries. Herein, a dual-enzyme system was constructed to synthesize l-aspartate from maleic anhydride at 50 °C, which can reduce the byproduct production. Maleate transformed from maleic anhydride in the solution was converted into l-aspartate via fumarate catalyzed by maleate isomerase (MaiA) and thermostable aspartase (AspB), respectively. Because MaiA is a rate-limiting enzyme, enzyme activities of various MaiAs were compared, and the efficient and thermostable maleate isomerase AaMaiA from Alicyclobacillus acidoterrestris was chosen. The Kcat/Km value of AaMaiA was 264.4 mM-1 min-1. AaMaiA and AspB were coexpressed in E. coli to produce l-aspartate. To improve the l-aspartate production rate, the ribosome binding site (RBS) sequence located upstream of AaMaiA was optimized and the Tat signal peptide was fused with AaMaiA. The conversion rate was 96% within 60 min, and the intermediate was not detected, the possible reason of which is that high temperature inhibits the activity of bacterial endogenous enzymes, but functional enzymes remain active. Cells from fermentation produced 243.6 g/L (1.83 M) of l-aspartate with a 2 M substrate. Our study revealed an effective method to produce l-aspartate without using gene knockout and provided a strategy for l-aspartate production in the industrial field.


Asunto(s)
Aspartato Amoníaco-Liasa , Ácido Aspártico , Anhídridos Maleicos/metabolismo , Escherichia coli/metabolismo , Temperatura , Secuencia de Aminoácidos , Aspartato Amoníaco-Liasa/química , Aspartato Amoníaco-Liasa/genética , Aspartato Amoníaco-Liasa/metabolismo
2.
Microbiol Spectr ; 10(5): e0132222, 2022 10 26.
Artículo en Inglés | MEDLINE | ID: mdl-36036634

RESUMEN

The development of efficient, low-cost, and robust expression systems is important for the mass production of proteins and natural products in large amounts using cell factories. Glycerol is an ideal carbon source for large-scale fermentation due to its low cost and favorable maintenance of the fermentation process. Here, we used the antiterminator protein GlpP and its target promoter PglpD to construct a highly efficient glycerol-inducible expression system (GIES) in Bacillus subtilis. This system was able to express heterologous genes in an autoinducible manner based on the sequential utilization of glucose and glycerol under the regulation of carbon catabolite repression. In such a system, the concentration of glycerol regulated the strength of gene expression, and the concentration of glucose affected both the timing of induction and the strength of gene expression. By enhancing GlpP, the GIES was further strengthened for high-level intracellular expression of aspartase and secretory expression of nattokinase. High yields of nattokinase in a 5-L fermenter through batch and fed-batch fermentation demonstrated the potential to apply the GIES for large-scale enzyme production. Through the evolution of the -10 box of PglpD, mutants with gradient activities were obtained. In addition, hybrid glycerol-inducible promoters were successfully constructed by combining the constitutive promoters and the 5' untranslated region of PglpD. Collectively, this study developed a GIES to obtain high-value products from inexpensive glycerol. More importantly, the great potential of the pair of inherent terminator and antiterminator protein as a portable biological tool for various purposes in synthetic biology is proposed. IMPORTANCE In this study, a GIES was constructed in B. subtilis by employing the antiterminator protein GlpP and the GlpP-regulated promoter PglpD. Based on the sequential utilization of glucose and glycerol by B. subtilis, the GIES was able to express genes in an autoinducible manner. The amounts and ratio of glucose and glycerol can regulate the gene induction timing and expression strength. The GIES was further applied for high yields of nattokinase, and its robustness in production scale-up was confirmed in a 5-L fermenter. The high-level expression of heterologous proteins demonstrated the huge application potential of the GIES. Furthermore, mutants of PglpD with gradient activities and hybrid glycerol-inducible promoters were obtained through the evolution of the -10 box of PglpD and the combination of the constitutive promoters and the 5' untranslated region of PglpD, respectively. These results demonstrated the use of the antiterminator protein as a regulator for various purposes in synthetic biology.


Asunto(s)
Aspartato Amoníaco-Liasa , Productos Biológicos , Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Glicerol/metabolismo , Regulación Bacteriana de la Expresión Génica , Aspartato Amoníaco-Liasa/genética , Aspartato Amoníaco-Liasa/metabolismo , Regiones no Traducidas 5' , Glucosa/metabolismo , Glucosa/farmacología , Carbono/metabolismo
3.
FEMS Microbiol Lett ; 369(1)2022 09 22.
Artículo en Inglés | MEDLINE | ID: mdl-36044995

RESUMEN

Metabolons represent the structural organization of proteins for metabolic or regulatory pathways. Here, the interaction of fumarase FumB, aspartase AspA, and L-tartrate dehydratase TtdAB with the C4-dicarboxylate (C4-DC) transporters DcuA, DcuB, DcuC, and the L-tartrate transporter TtdT of Escherichia coli was tested by a bacterial two-hybrid (BACTH) assay in situ, or by co-chromatography using mSPINE (membrane Streptavidin protein interaction experiment). From the general C4-DC transporters, DcuB interacted with FumB and AspA, DcuA with AspA, whereas DcuC interacted with neither FumB nor AspA. Moreover, TtdT did not interact with TtdAB. The fumB-dcuB, the dcuA-aspA, and the ttdAB-ttdT genes encoding the respective proteins colocalize on the genome and each pair of genes forms cotranscripts, whereas the dcuC gene lies alone. The data suggest the formation of DcuB/FumB and DcuB/AspA metabolons for the uptake of L-malate, or L-aspartate, and their conversion to fumarate for fumarate respiration and excretion of the product succinate. The DcuA/AspA metabolon catalyzes uptake and conversion of L-aspartate to fumarate coupled to succinate excretion. The DcuA/AspA metabolon provides ammonia at the same time for nitrogen assimilation (ammonia shuttle). On the other hand, TtdT and TtdAB are not organized in a metabolon. Reasons for the formation (DcuA/AspA, DcuB/FumB, and DcuB/AspA) or nonformation (DcuC, TtdT, and TtdAB) of metabolons are discussed based on their metabolic roles.


Asunto(s)
Aspartato Amoníaco-Liasa , Proteínas de Escherichia coli , Amoníaco/metabolismo , Aspartato Amoníaco-Liasa/metabolismo , Ácido Aspártico/metabolismo , Proteínas Bacterianas/genética , Transportadores de Ácidos Dicarboxílicos/genética , Transportadores de Ácidos Dicarboxílicos/metabolismo , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Fumarato Hidratasa/metabolismo , Fumaratos/metabolismo , Hidroliasas/metabolismo , Malatos/metabolismo , Proteínas de la Membrana/metabolismo , Nitrógeno/metabolismo , Estreptavidina/metabolismo , Ácido Succínico/metabolismo , Tartratos/metabolismo
4.
Food Microbiol ; 106: 104030, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-35690437

RESUMEN

Propionibacterium freudenreichii is crucial in Swiss-type cheese manufacture. Classic propionic acid fermentation yields the nutty flavor and the typical eyes. Co-metabolism of aspartate pronounces the flavor of the cheese; however, it also increases the size of the eyes, which can induce splitting and reduce the cheese quality. Aspartase (EC 4.3.1.1) catalyzes the deamination of aspartate, yielding fumarate and ammonia. The aspartase activity varies considerably among P. freudenreichii strains. Here, the correlation between aspartase activity and the locus of aspartase-encoding genes (aspA ) and dcuA encoding the C4-dicarboxylate transporter was investigated in 46 strains to facilitate strain selection for cheese culture. Low aspartase activity was correlated with a particular genomic rearrangement: low in vitro aspartase activity always occurred in strains with gene clusters aspA - dcuA where the dcuA was frameshifted, producing a stop codon or was disrupted by an ISL3-like element. The low aspartase activity could be due to the protein sequence of the aspartase or a dysfunctional DcuA. The highest values of aspartase activity were detected in strains with aspA1 - aspA2-dcuA with a DcuA sequence sharing 99.07 - 100% identity with the DcuA sequence of strain DSM 20271 T and an additional C4-dicarboxylate transporter belonging to the DcuAB family.


Asunto(s)
Aspartato Amoníaco-Liasa , Propionibacterium freudenreichii , Aspartato Amoníaco-Liasa/metabolismo , Ácido Aspártico/metabolismo , Transportadores de Ácidos Dicarboxílicos/genética , Transportadores de Ácidos Dicarboxílicos/metabolismo , Genómica , Propionibacterium/genética , Propionibacterium/metabolismo , Propionibacterium freudenreichii/metabolismo
5.
Lett Appl Microbiol ; 75(4): 824-830, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-35657030

RESUMEN

As an intermediate in drug synthesis, uridine has practical applications in the pharmaceutical field. Bacillus subtilis is used as a host to boost uridine yield by manipulating its uridine biosynthesis pathway. In this study, we engineered a high-uridine-producing strain of B. subtilis by modifying its metabolic pathways in vivo. Overexpression of the aspartate ammonia-lyase (ansB) gene increased the relative transcriptional level of ansB in B. subtilis TD320 by 13·18 times and improved uridine production to 15·13 g l-1 after 72-h fermentation. Overexpression of the putative 6-phosphogluconolactonase (ykgB) gene increased uridine production by the derivative strain TD325 to 15·43 g l-1 . Reducing the translation of the amido phosphoribosyl transferase (purF) gene and inducing expression of the subtilisin E (aprE) gene resulted in a 1·99-fold increase in uridine production after 24 h shaking. Finally, uridine production in the optimal strain B. subtilis TD335, which exhibited reduced urease expression, reached 17·9 g l-1 with a yield of 314 mg of uridine g-1 glucose. To our knowledge, this is the first study to obtain high-yield uridine-producing B. subtilis in a medium containing only three components (80 g l-1 glucose, 20 g l-1 yeast powder, and 20 g l-1 urea).


Asunto(s)
Aspartato Amoníaco-Liasa , Bacillus subtilis , Aspartato Amoníaco-Liasa/metabolismo , Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Fermentación , Glucosa/metabolismo , Ingeniería Metabólica/métodos , Polvos/metabolismo , Subtilisinas/metabolismo , Transferasas/metabolismo , Urea/metabolismo , Ureasa/metabolismo , Uridina/metabolismo
6.
Chembiochem ; 23(7): e202100708, 2022 04 05.
Artículo en Inglés | MEDLINE | ID: mdl-35114050

RESUMEN

Aspartate ammonia-lyases (AALs) catalyze the non-oxidative elimination of ammonia from l-aspartate to give fumarate and ammonia. In this work the AAL coding gene from Pseudomonas fluorescens R124 was identified, isolated, and cloned into the pET-15b expression vector and expressed in E. coli. The purified enzyme (PfAAL) showed optimal activity at pH 8.8, Michaelis-Menten kinetics in the ammonia elimination from l-aspartate, and no strong dependence on divalent metal ions for its activity. The purified PfAAL was covalently immobilized on epoxy-functionalized magnetic nanoparticles (MNP), and effective kinetics of the immobilized PfAAL-MNP was compared to the native solution form. Glycerol addition significantly enhanced the storability of PfAAL-MNP. Inhibiting effect of the growing viscosity (modulated by addition of glycerol or glucose) on the enzymatic activity was observed for the native and immobilized form of PfAAL, as previously described for other free enzymes. The storage stability and recyclability of PfAAL-MNP is promising for further biocatalytic applications.


Asunto(s)
Aspartato Amoníaco-Liasa , Nanopartículas de Magnetita , Pseudomonas fluorescens , Aspartato Amoníaco-Liasa/genética , Aspartato Amoníaco-Liasa/metabolismo , Enzimas Inmovilizadas/metabolismo , Escherichia coli/metabolismo , Concentración de Iones de Hidrógeno , Cinética , Nanopartículas de Magnetita/química
7.
Mol Microbiol ; 115(4): 526-538, 2021 04.
Artículo en Inglés | MEDLINE | ID: mdl-33012071

RESUMEN

Escherichia coli uses the C4-dicarboxylate transporter DcuA for L-aspartate/fumarate antiport, which results in the exploitation of L-aspartate for fumarate respiration under anaerobic conditions and for nitrogen assimilation under aerobic and anaerobic conditions. L-Aspartate represents a high-quality nitrogen source for assimilation. Nitrogen assimilation from L-aspartate required DcuA, and aspartase AspA to release ammonia. Ammonia is able to provide by established pathways the complete set of intracellular precursors (ammonia, L-aspartate, L-glutamate, and L-glutamine) for synthesizing amino acids, nucleotides, and amino sugars. AspA was regulated by a central regulator of nitrogen metabolism, GlnB. GlnB interacted with AspA and stimulated its L-aspartate deaminase activity (NH3 -forming), but not the reverse amination reaction. GlnB stimulation required 2-oxoglutarate and ATP, or uridylylated GlnB-UMP, consistent with the activation of nitrogen assimilation under nitrogen limitation. Binding to AspA was lost in the GlnB(Y51F) mutant of the uridylylation site. AspA, therefore, represents a new type of GlnB target that binds GlnB (with ATP and 2-oxoglutarate), or GlnB-UMP (with or without effectors), and both situations stimulate AspA deamination activity. Thus, AspA represents the central enzyme for nitrogen assimilation from L-aspartate, and AspA is integrated into the nitrogen assimilation network by the regulator GlnB.


Asunto(s)
Aspartato Amoníaco-Liasa/metabolismo , Ácido Aspártico/metabolismo , Proteínas Bacterianas/metabolismo , Transportadores de Ácidos Dicarboxílicos/metabolismo , Proteínas de Escherichia coli/metabolismo , Escherichia coli/enzimología , Escherichia coli/fisiología , Nitrógeno/metabolismo , Proteínas PII Reguladoras del Nitrógeno/metabolismo , Amoníaco/metabolismo , Ácido Aspártico/química , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Regulación Bacteriana de la Expresión Génica , Ácido Glutámico/metabolismo , Glutamina/metabolismo , Ácidos Cetoglutáricos/metabolismo , Redes y Vías Metabólicas , Mutación , Proteínas PII Reguladoras del Nitrógeno/química , Proteínas PII Reguladoras del Nitrógeno/genética , Dominios y Motivos de Interacción de Proteínas
8.
BMC Microbiol ; 20(1): 369, 2020 12 03.
Artículo en Inglés | MEDLINE | ID: mdl-33272193

RESUMEN

BACKGROUND: Pasteurella multocida is responsible for a highly infectious and contagious disease in birds, leading to heavy economic losses in the chicken industry. However, the pathogenesis of this disease is poorly understood. We recently identified an aspartate ammonia-lyase (aspA) in P. multocida that was significantly upregulated under iron-restricted conditions, the protein of which could effectively protect chicken flocks against P. multocida. However, the functions of this gene remain unclear. In the present study, we constructed aspA mutant strain △aspA::kan and complementary strain C△aspA::kan to investigate the function of aspA in detail. RESULT: Deletion of the aspA gene in P. multocida resulted in a significant reduction in bacterial growth in LB (Luria-Bertani) and MH (Mueller-Hinton) media, which was rescued by supplementation with 20 mM fumarate. The mutant strain △aspA::kan showed significantly growth defects in anaerobic conditions and acid medium, compared with the wild-type strain. Moreover, growth of △aspA::kan was more seriously impaired than that of the wild-type strain under iron-restricted conditions, and this growth recovered after supplementation with iron ions. AspA transcription was negatively regulated by iron conditions, as demonstrated by quantitative reverse transcription-polymerase chain reaction. Although competitive index assay showed the wild-type strain outcompetes the aspA mutant strain and △aspA::kan was significantly more efficient at producing biofilms than the wild-type strain, there was no significant difference in virulence between the mutant and the wild-type strains. CONCLUSION: These results demonstrate that aspA is required for bacterial growth in complex medium, and under anaerobic, acid, and iron-limited conditions.


Asunto(s)
Aspartato Amoníaco-Liasa/metabolismo , Proteínas Bacterianas/metabolismo , Pasteurella multocida/enzimología , Ácidos/metabolismo , Anaerobiosis , Animales , Aspartato Amoníaco-Liasa/genética , Proteínas Bacterianas/genética , Biopelículas/crecimiento & desarrollo , Pollos , Fumaratos/metabolismo , Hierro/metabolismo , Mutación , Infecciones por Pasteurella/microbiología , Infecciones por Pasteurella/veterinaria , Pasteurella multocida/crecimiento & desarrollo
9.
J Ind Microbiol Biotechnol ; 47(6-7): 465-474, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-32524454

RESUMEN

ß-Alanine (ß-Ala) is an important intermediate with numerous applications in food and feed additives, pharmaceuticals, polymeric materials, and electroplating industries. Its biological production routes that employ L-aspartate-α-decarboxylase (ADC) as the key enzyme are attractive. In this study, we developed an efficient and environmentally safe method for ß-Ala production by co-expressing two different subtypes of ADC. A bacterial ADC from Bacillus subtilis (BSADC) and an insect ADC from Tribolium castaneum (TCADC) use pyruvoyl and pyridoxal-5'-phosphate (PLP) as cofactor, respectively. 3050 mM (271.5 g/L) ß-Ala was achieved from L-aspartic acid by using the whole-cell biocatalyst co-expressing BSADC and TCADC, corresponding to a conversion rate of 92.4%. Meanwhile, one-pot synthesis of ß-Ala from fumaric acid through using a tri-enzyme cascade route with two different subtypes of ADC and L-aspartase (AspA) from Escherichia coli was established. 2250 mM (200.3 g/L) ß-Ala was obtained from fumaric acid with a conversion rate of 90.0%. This work proposes a novel strategy that improves ß-Ala production in the decarboxylation pathway of L-aspartic acid.


Asunto(s)
Aspartato Amoníaco-Liasa/metabolismo , Carboxiliasas/metabolismo , Glutamato Descarboxilasa/metabolismo , beta-Alanina/biosíntesis , Animales , Ácido Aspártico/metabolismo , Bacillus subtilis/metabolismo , Biotecnología , Biotransformación , Catálisis , Medios de Cultivo , Escherichia coli/metabolismo , Fumaratos/metabolismo , Concentración de Iones de Hidrógeno , Temperatura , Tribolium
10.
Nat Chem Biol ; 14(7): 664-670, 2018 07.
Artículo en Inglés | MEDLINE | ID: mdl-29785057

RESUMEN

Introduction of innovative biocatalytic processes offers great promise for applications in green chemistry. However, owing to limited catalytic performance, the enzymes harvested from nature's biodiversity often need to be improved for their desired functions by time-consuming iterative rounds of laboratory evolution. Here we describe the use of structure-based computational enzyme design to convert Bacillus sp. YM55-1 aspartase, an enzyme with a very narrow substrate scope, to a set of complementary hydroamination biocatalysts. The redesigned enzymes catalyze asymmetric addition of ammonia to substituted acrylates, affording enantiopure aliphatic, polar and aromatic ß-amino acids that are valuable building blocks for the synthesis of pharmaceuticals and bioactive compounds. Without a requirement for further optimization by laboratory evolution, the redesigned enzymes exhibit substrate tolerance up to a concentration of 300 g/L, conversion up to 99%, ß-regioselectivity >99% and product enantiomeric excess >99%. The results highlight the use of computational design to rapidly adapt an enzyme to industrially viable reactions.


Asunto(s)
Aspartato Amoníaco-Liasa/química , Biología Computacional , Aminación , Aspartato Amoníaco-Liasa/metabolismo , Bacillus/enzimología , Biocatálisis
11.
J Biol Chem ; 293(14): 5236-5246, 2018 04 06.
Artículo en Inglés | MEDLINE | ID: mdl-29414784

RESUMEN

For nearly 30 years, coenzyme M (CoM) was assumed to be present solely in methanogenic archaea. In the late 1990s, CoM was reported to play a role in bacterial propene metabolism, but no biosynthetic pathway for CoM has yet been identified in bacteria. Here, using bioinformatics and proteomic approaches in the metabolically versatile bacterium Xanthobacter autotrophicus Py2, we identified four putative CoM biosynthetic enzymes encoded by the xcbB1, C1, D1, and E1 genes. Only XcbB1 was homologous to a known CoM biosynthetic enzyme (ComA), indicating that CoM biosynthesis in bacteria involves enzymes different from those in archaea. We verified that the ComA homolog produces phosphosulfolactate from phosphoenolpyruvate (PEP), demonstrating that bacterial CoM biosynthesis is initiated similarly as the phosphoenolpyruvate-dependent methanogenic archaeal pathway. The bioinformatics analysis revealed that XcbC1 and D1 are members of the aspartase/fumarase superfamily (AFS) and that XcbE1 is a pyridoxal 5'-phosphate-containing enzyme with homology to d-cysteine desulfhydrases. Known AFS members catalyze ß-elimination reactions of succinyl-containing substrates, yielding fumarate as the common unsaturated elimination product. Unexpectedly, we found that XcbC1 catalyzes ß-elimination on phosphosulfolactate, yielding inorganic phosphate and a novel metabolite, sulfoacrylic acid. Phosphate-releasing ß-elimination reactions are unprecedented among the AFS, indicating that XcbC1 is an unusual phosphatase. Direct demonstration of phosphosulfolactate synthase activity for XcbB1 and phosphate ß-elimination activity for XcbC1 strengthened their hypothetical assignment to a CoM biosynthetic pathway and suggested functions also for XcbD1 and E1. Our results represent a critical first step toward elucidating the CoM pathway in bacteria.


Asunto(s)
Mesna/metabolismo , Fosfatos/metabolismo , Xanthobacter/metabolismo , Aspartato Amoníaco-Liasa/metabolismo , Bacterias/metabolismo , Biología Computacional/métodos , Cristalografía por Rayos X , Fumarato Hidratasa/metabolismo , Fumaratos , Fosfoenolpiruvato/metabolismo , Ácidos Fosfóricos , Monoéster Fosfórico Hidrolasas , Proteómica , Fosfato de Piridoxal
12.
Sheng Wu Gong Cheng Xue Bao ; 33(5): 875-879, 2017 May 25.
Artículo en Chino | MEDLINE | ID: mdl-28876041

RESUMEN

Enzymatic synthesis is an important way to produce ß-alanine, but the biological method is expensive generally because of the high price of substrate. In this paper, a two-step enzymatic cascade system was developed, combining L-aspartase from Escherichia coli DH5α and L-aspartate α-decarboxylase from Corynebacterium glutamicum. This system catalyzes Fumarate and ammonia to ß-alanine. The optimal ratio of AspA and PanD was 1:80 (W/W), and the concentration of AspA was 10 µg/mL, at 37 ℃ and pH 7.0. When the concentration of Fumarate was 100 mmol/L, the reaction reached its equilibrium after 8 h, and the yield of ß-alanine was 90 mmol/L (7 g/L). The yield of ß-alanine can reach 126 mmol/L (9.8 g/L) when the concentration of Fumarate increased to 200 mmol/L. Extending reaction time, the conversion rate did not change obviously. Using this two-step enzymatic cascade system, ß-alanine from cheaper substrate Fumarate can be obtained.


Asunto(s)
Aspartato Amoníaco-Liasa/metabolismo , Proteínas Bacterianas/metabolismo , Corynebacterium glutamicum/enzimología , Escherichia coli/enzimología , Glutamato Descarboxilasa/metabolismo , beta-Alanina/metabolismo , Amoníaco/metabolismo , Biocatálisis , Fumaratos/metabolismo , Microbiología Industrial , Biosíntesis de Proteínas
14.
Oncogene ; 35(26): 3351-64, 2016 06 30.
Artículo en Inglés | MEDLINE | ID: mdl-26657154

RESUMEN

Proteolysis is not only a critical requirement for life, but the executing enzymes also play important roles in numerous pathological conditions, including cancer. Therefore, targeting proteases is clearly relevant for improving cancer patient care. However, to effectively control proteases, a profound knowledge of their mechanistic function as well as their regulation and downstream signalling in health and disease is required. The highly conserved protease Threonine Aspartase1 (Taspase1) is overexpressed in numerous liquid and solid malignancies and was characterized as a 'non-oncogene addiction' protease. Although Taspase1 was shown to cleave various regulatory proteins in humans as well as leukaemia provoking mixed lineage leukaemia fusions, our knowledge on its detailed functions and the underlying mechanisms contributing to cancer is still incomplete. Despite superficial similarity to type 2 asparaginases as well as Ntn proteases, such as the proteasome, Taspase1-related research so far gives us the picture of a unique protease exhibiting special features. Moreover, neither effective genetic nor chemical inhibitors for this enzyme are available so far, thus hampering not only to further dissect Taspase1's pathobiological functions but also precluding the assessment of its clinical impact. Based on recent insights, we here critically review the current knowledge of Taspase1's structure-function relationship and its mechanistic relevance for tumorigenesis obtained from in vitro and in vivo cancer models. We provide a comprehensive overview of tumour entities for which Taspase1 might be of predictive and therapeutic value, and present the respective experimental evidence. To stimulate progress in the field, a comprehensive overview of Taspase1 targeting approaches is presented, including coverage of Taspase1-related patents. We conclude by discussing future inhibition strategies and relevant challenges, which need to be resolved by the field.


Asunto(s)
Aspartato Amoníaco-Liasa/metabolismo , Endopeptidasas/metabolismo , Neoplasias/enzimología , Treonina/metabolismo , Investigación Biomédica Traslacional/métodos , Aspartato Amoníaco-Liasa/antagonistas & inhibidores , Aspartato Amoníaco-Liasa/genética , Endopeptidasas/genética , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/uso terapéutico , Regulación Enzimológica de la Expresión Génica/efectos de los fármacos , Regulación Neoplásica de la Expresión Génica/efectos de los fármacos , Humanos , Estructura Molecular , Neoplasias/genética , Neoplasias/prevención & control
15.
J Ind Microbiol Biotechnol ; 42(10): 1319-24, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-26254042

RESUMEN

We previously constructed a Psychrophile-based Simple bioCatalyst (PSCat) reaction system, in which psychrophilic metabolic enzymes are inactivated by heat treatment, and used it here to study the conversion of aspartic acid from fumaric acid mediated by the activity of aspartate ammonia-lyase (aspartase). In Escherichia coli, the biosynthesis of aspartic acid competes with that of L-malic acid produced from fumaric acid by fumarase. In this study, E. coli aspartase was expressed in psychrophilic Shewanella livingstonensis Ac10 heat treated at 50 °C for 15 min. The resultant PSCat could convert fumaric acid to aspartic acid without the formation of L-malic acid because of heat inactivation of psychrophilic fumarase activity. Furthermore, alginate-immobilized PSCat produced high yields of aspartic acid and could be re-used nine times. The results of our study suggest that PSCat can be applied in biotechnological production as a new approach to increase the yield of target compounds.


Asunto(s)
Ácido Aspártico/biosíntesis , Biocatálisis , Shewanella/metabolismo , Aspartato Amoníaco-Liasa/metabolismo , Biotecnología/métodos , Estabilidad de Enzimas , Equipo Reutilizado , Escherichia coli/enzimología , Escherichia coli/metabolismo , Fumarato Hidratasa/metabolismo , Fumaratos/metabolismo , Calor , Malatos/metabolismo , Shewanella/enzimología , Shewanella/genética
16.
Artículo en Inglés | MEDLINE | ID: mdl-25386411

RESUMEN

Before the advent of molecular biology methods, studies of pathogens were dominated by analyses of their metabolism. Development of molecular biology techniques then enabled the identification and functional characterisation of the fascinating toolbox of virulence factors. Increasing, genomic and proteomic approaches form the basis for a more systemic view on pathogens' functions in the context of infection. Re-emerging interest in the metabolism of pathogens and hosts further expands our view of infections. There is increasing evidence that virulence functions and metabolism of pathogens are extremely intertwined. Type three secretion systems (T3SSs) are major virulence determinants of many Gram-negative pathogens and it is the objective of this review to illustrate the intertwined relationship between T3SSs and the metabolism of the pathogens deploying them.


Asunto(s)
Bacterias/metabolismo , Fenómenos Fisiológicos Bacterianos , Sistemas de Secreción Bacterianos , Interacciones Huésped-Patógeno , Aspartato Amoníaco-Liasa/metabolismo , Bacterias/genética , Bacterias/patogenicidad , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Catálisis , Ácidos Grasos/metabolismo , Plásmidos/genética , Virulencia/genética
17.
Indian J Exp Biol ; 51(11): 997-1003, 2013 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-24416937

RESUMEN

Applicability of different mechanical cell disruption techniques namely sonication, bead milling and French press for the release of aspartase from E. coli K-12 was compared. Various operating parameters of each technique were optimized to obtain maximum aspartase release. The efficiency of aspartase release and cell disruption by all the methods was also compared under optimal conditions. The maximum release of aspartase (98.22%) and maximum cell breakage (84.25%) was observed using French press, while 92% of aspartase release was obtained by both sonication and bead milling. The order of cell disruption constant (k) for aspartase release by these methods was French press > bead milling > sonication. Disruption of cells using French press also demonstrated maximum protein release (14.12 mg/mL). The crude enzyme preparations can be further used for purification and its applications.


Asunto(s)
Aspartato Amoníaco-Liasa/metabolismo , Escherichia coli/enzimología , Reactores Biológicos , Escherichia coli/citología
18.
ACS Chem Biol ; 7(10): 1618-28, 2012 Oct 19.
Artículo en Inglés | MEDLINE | ID: mdl-22834890

RESUMEN

Ammonia lyases catalyze the formation of α,ß-unsaturated bonds by the elimination of ammonia from their substrates. This conceptually straightforward reaction has been the emphasis of many studies, with the main focus on the catalytic mechanism of these enzymes and/or the use of these enzymes as catalysts for the synthesis of enantiomerically pure α-amino acids. In this Review aspartate ammonia lyase and 3-methylaspartate ammonia lyase, which represent two different enzyme superfamilies, are discussed in detail. In the past few years, the three-dimensional structures of these lyases in complex with their natural substrates have revealed the details of two elegant catalytic strategies. These strategies exploit similar deamination mechanisms that involve general-base catalyzed formation of an enzyme-stabilized enolate anion (aci-carboxylate) intermediate. Recent progress in the engineering and application of these enzymes to prepare enantiopure l-aspartic acid derivatives, which are highly valuable as tools for biological research and as chiral building blocks for pharmaceuticals and food additives, is also discussed.


Asunto(s)
Amoníaco-Liasas/metabolismo , Aspartato Amoníaco-Liasa/metabolismo , Amoníaco/química , Amoníaco-Liasas/química , Aspartato Amoníaco-Liasa/química , Bacterias/enzimología , Biocatálisis , Dominio Catalítico , Modelos Moleculares , Ingeniería de Proteínas
19.
Biochemistry ; 51(21): 4237-43, 2012 May 29.
Artículo en Inglés | MEDLINE | ID: mdl-22551392

RESUMEN

Members of the aspartase/fumarase superfamily share a common tertiary and quaternary fold, as well as a similar active site architecture; the superfamily includes aspartase, fumarase, argininosuccinate lyase, adenylosuccinate lyase, δ-crystallin, and 3-carboxy-cis,cis-muconate lactonizing enzyme (CMLE). These enzymes all process succinyl-containing substrates, leading to the formation of fumarate as the common product (except for the CMLE-catalyzed reaction, which results in the formation of a lactone). In the past few years, X-ray crystallographic analysis of several superfamily members in complex with substrate, product, or substrate analogues has provided detailed insights into their substrate binding modes and catalytic mechanisms. This structural work, combined with earlier mechanistic studies, revealed that members of the aspartase/fumarase superfamily use a common catalytic strategy, which involves general base-catalyzed formation of a stabilized aci-carboxylate (or enediolate) intermediate and the participation of a highly flexible loop, containing the signature sequence GSSxxPxKxN (named the SS loop), in substrate binding and catalysis.


Asunto(s)
Aspartato Amoníaco-Liasa/química , Aspartato Amoníaco-Liasa/metabolismo , Fumarato Hidratasa/química , Fumarato Hidratasa/metabolismo , Adenilosuccinato Liasa/química , Adenilosuccinato Liasa/genética , Adenilosuccinato Liasa/metabolismo , Secuencia de Aminoácidos , Argininosuccinatoliasa/química , Argininosuccinatoliasa/genética , Argininosuccinatoliasa/metabolismo , Aspartato Amoníaco-Liasa/genética , Catálisis , Dominio Catalítico , Secuencia Conservada , Escherichia coli/enzimología , Escherichia coli/genética , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Fumarato Hidratasa/genética , Humanos , Liasas Intramoleculares/química , Liasas Intramoleculares/genética , Liasas Intramoleculares/metabolismo , Modelos Moleculares , Datos de Secuencia Molecular , Estructura Cuaternaria de Proteína , Estructura Terciaria de Proteína , Saccharomyces cerevisiae/enzimología , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Homología de Secuencia de Aminoácido , Especificidad por Sustrato , delta-Cristalinas/química , delta-Cristalinas/genética , delta-Cristalinas/metabolismo
20.
Appl Biochem Biotechnol ; 167(5): 991-1001, 2012 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-22328292

RESUMEN

Aspartase (L-aspartate ammonia-lyase; EC 4.3.1.1) catalyzes the reversible amination of fumaric acid to produce L-aspartic acid. Aspartase coding gene (aspA) of Aeromonas media NFB-5 was cloned, sequenced, and expressed with His tag using pET-21b⁺ expression vector in Escherichia coli BL21. Higher expression was obtained with IPTG (1.5 mM) induction for 5 h at 37 °C in LB medium supplemented with 0.3% K2HPO4 and 0.3% KH2PO4. Recombinant His tagged aspartase was purified using Ni-NTA affinity chromatography and characterized for various biochemical and kinetic parameters. The purified aspartase showed optimal activity at pH 8.5 and 8.0 in the presence and absence of magnesium ions, respectively. The optimum temperature was determined to be 35 °C. The enzyme showed apparent K(m) and V(max) values for L-aspartate as 2.01 mM and 114 U/mg, respectively. The enzyme was stable in pH range of 6.5-9.5 and temperature up to 45 °C. Divalent metal ion requirement of enzyme was efficiently fulfilled by Mg²âº, Mn²âº, and Ca²âº ions. The cloned gene (aspA) product showed molecular weight of approximately 51 kDa by SDS-PAGE, which is in agreement with the molecular weight calculated from putative amino acid sequence. This is the first report on expression and characterization of recombinant aspartase from A. media.


Asunto(s)
Aeromonas/enzimología , Aspartato Amoníaco-Liasa/aislamiento & purificación , Aspartato Amoníaco-Liasa/metabolismo , Cromatografía de Afinidad , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Aeromonas/genética , Secuencia de Aminoácidos , Aspartato Amoníaco-Liasa/química , Aspartato Amoníaco-Liasa/genética , Clonación Molecular , Entropía , Activación Enzimática , Estabilidad de Enzimas , Semivida , Concentración de Iones de Hidrógeno , Cinética , Metales/farmacología , Datos de Secuencia Molecular , Peso Molecular , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Temperatura
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