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1.
Molecules ; 29(9)2024 Apr 28.
Article En | MEDLINE | ID: mdl-38731531

Actinomycetes have long been recognized as an important source of antibacterial natural products. In recent years, actinomycetes in extreme environments have become one of the main research directions. Streptomyces sp. KN37 was isolated from the cold region of Kanas in Xinjiang. It demonstrated potent antimicrobial activity, but the primary active compounds remained unclear. Therefore, we aimed to combine genomics with traditional isolation methods to obtain bioactive compounds from the strain KN37. Whole-genome sequencing and KEGG enrichment analysis indicated that KN37 possesses the potential for synthesizing secondary metabolites, and 41 biosynthetic gene clusters were predicted, some of which showed high similarity to known gene clusters responsible for the biosynthesis of antimicrobial antibiotics. The traditional isolation methods and activity-guided fractionation were employed to isolate and purify seven compounds with strong bioactivity from the fermentation broth of the strain KN37. These compounds were identified as 4-(Diethylamino)salicylaldehyde (1), 4-Nitrosodiphenylamine (2), N-(2,4-Dimethylphenyl)formamide (3), 4-Nitrocatechol (4), Methylsuccinic acid (5), Phenyllactic acid (6) and 5,6-Dimethylbenzimidazole (7). Moreover, 4-(Diethylamino)salicylaldehyde exhibited the most potent inhibitory effect against Rhizoctonia solani, with an EC50 value of 14.487 mg/L, while 4-Nitrosodiphenylamine showed great antibacterial activity against Erwinia amylovora, with an EC50 value of 5.715 mg/L. This study successfully isolated several highly active antimicrobial compounds from the metabolites of the strain KN37, which could contribute as scaffolds for subsequent chemical synthesis. On the other hand, the newly predicted antibiotic-like substances have not yet been isolated, but they still hold significant research value. They are instructive in the study of active natural product biosynthetic pathways, activation of silent gene clusters, and engineering bacteria construction.


Genomics , Multigene Family , Streptomyces , Streptomyces/genetics , Streptomyces/metabolism , Streptomyces/chemistry , Genomics/methods , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/biosynthesis , Microbial Sensitivity Tests , Biological Products/pharmacology , Biological Products/chemistry , Biological Products/isolation & purification , Anti-Infective Agents/pharmacology , Anti-Infective Agents/chemistry , Anti-Infective Agents/isolation & purification , Agriculture/methods , Whole Genome Sequencing
2.
Carbohydr Polym ; 338: 122199, 2024 Aug 15.
Article En | MEDLINE | ID: mdl-38763725

Deep eutectic solvents (DES) emerge as promising alternatives to conventional solvents, offering outstanding extraction capabilities, low toxicity, eco-friendliness, straightforward synthesis procedures, broad applicability, and impressive recyclability. DES are synthesized by combining two or more components through various synthesis procedures, such as heat-assisted mixing/stirring, grinding, freeze drying, and evaporation. Polysaccharides, as abundant natural materials, are highly valued for their biocompatibility, biodegradability, and sustainability. These versatile biopolymers can be derived from various natural sources such as plants, algae, animals, or microorganisms using diverse extraction techniques. This review explores the synthesis procedures of DES, their physicochemical properties, characterization analysis, and their application in polysaccharide extraction. The extraction optimization strategies, parameters affecting DES-based polysaccharide extraction, and separation mechanisms are comprehensively discussed. Additionally, this review provides insights into recently developed molecular guides for DES screening and the utilization of artificial neural networks for optimizing DES-based extraction processes. DES serve as excellent extraction media for polysaccharides from different sources, preserving their functional features. They are utilized both as extraction solvents and as supporting media to enhance the extraction abilities of other solvents. Continued research aims to improve DES-based extraction methods and achieve selective, energy-efficient processes to meet the demands of this expanding field.


Deep Eutectic Solvents , Polysaccharides , Polysaccharides/chemistry , Polysaccharides/isolation & purification , Deep Eutectic Solvents/chemistry , Biological Products/chemistry , Biological Products/isolation & purification , Animals , Solvents/chemistry , Chemical Fractionation/methods , Plants/chemistry
3.
J Sep Sci ; 47(9-10): e2300898, 2024 May.
Article En | MEDLINE | ID: mdl-38726747

Based on the specific binding of drug molecules to cell membrane receptors, a screening and separation method for active compounds of natural products was established by combining phospholipase C (PLC) sensitized hollow fiber microscreening by a solvent seal with high-performance liquid chromatography technology. In the process, the factors affecting the screening were optimized. Under the optimal screening conditions, we screened honokiol (HK), magnolol (MG), negative control drug carbamazepine, and positive control drug amentoflavone, the repeatability of the method was tested. The PLC activity was determined before and after the screening. Experimental results showed that the sensitization factors of PLC of HK and MG were 61.0 and 48.5, respectively, and amentoflavone was 15.0, carbamazepine could not bind to PLC. Moreover, the molecular docking results were consistent with this measurement, indicating that HK and MG could be combined with PLC, and they were potential interacting components with PLC. This method used organic solvent to seal the PLC greatly ensuring the activity, so this method had the advantage of integrating separation, and purification with screening, it not only exhibited good reproducibility and high sensitivity but was also suitable for screening the active components in natural products by various targets in vitro.


Biological Products , Type C Phospholipases , Biological Products/chemistry , Biological Products/pharmacology , Biological Products/isolation & purification , Type C Phospholipases/metabolism , Type C Phospholipases/chemistry , Type C Phospholipases/antagonists & inhibitors , Chromatography, High Pressure Liquid , Molecular Docking Simulation , Lignans/chemistry , Lignans/isolation & purification , Lignans/pharmacology , Biphenyl Compounds/antagonists & inhibitors , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Antineoplastic Agents/isolation & purification , Humans , Allyl Compounds , Phenols
4.
Bioorg Chem ; 147: 107389, 2024 Jun.
Article En | MEDLINE | ID: mdl-38677011

The leaves of Odontonema strictum, a tropical plant used for its antihypertensive properties, are rich in nutrients and biologically active phytochemicals, such as ß-sitosterol, stigmasterol, umuravumbolide, deacetylumuravumbolide, dideacetylboronolide, deacetylboronolide, verbascoside, and isoverbascoside. In addition, its roots are rich in ß-sitosterol, stigmasterol, and the iridoid glycoside ß-O-methyl-unedoside. Ingestion of the roots was reported to have a sedative effect in a dog was previously reported on a dog eating the roots of this plant. In the present study, we report for the first time the cell proliferation- and neurite outgrowth-promoting effects in PC12 neuronal cells of the isolated organic compounds and crude extracts from O. strictum. Pituitary adenylate cyclase-activating peptide (PACAP) and quercetin were used as positive controls. At the concentration of 0.2 µg/mL, ß-sitosterol was more potent than quercetin and displayed the same activity (>45 µm/cell) as PACAP (100 nM). At a low concentration (0.04 µg/mL), verbascoside and isoverbascoside showed the strongest neurite outgrowth-promoting effect (neurite length of 30 to 35 µm/cell). Our results indicate that phytomedicines made from O. strictum may be useful in preventing neurodegenerative diseases.


Biological Products , Cell Proliferation , Neuronal Outgrowth , Animals , PC12 Cells , Neuronal Outgrowth/drug effects , Rats , Biological Products/pharmacology , Biological Products/chemistry , Biological Products/isolation & purification , Cell Proliferation/drug effects , Molecular Structure , Dose-Response Relationship, Drug , Structure-Activity Relationship , Neurons/drug effects , Neurons/cytology , Plant Leaves/chemistry
5.
Mar Drugs ; 22(4)2024 Apr 17.
Article En | MEDLINE | ID: mdl-38667798

Three pairs of enantiomers (1-3)-the new 12R-aloesol (1a) and two new fatty acids (2 and 3)-and one new natural product (4) together three known compounds (5-7) were isolated from a coral-reef-derived Streptomyces sp. SCSIO 66814. Their structures were determined through extensive spectroscopic analysis, chiral analysis, and single-crystal X-ray diffraction data. Compounds 2 and 3 were presumed to be intermediates for further generating homononactic acid (5) and nonactic acid, and the latter two molecules were able to act as precursors to form macrotetrolides with remarkable biological activity. The isolation of related precursors, compounds 2-5, provided more evidence to support the proposal of a plausible biosynthetic pathway for nonactic acid and its homologs. Additionally, (+)-1 exhibited a weak activity against DPPH radicals.


Anthozoa , Chromones , Streptomyces , Streptomyces/metabolism , Streptomyces/chemistry , Chromones/chemistry , Chromones/isolation & purification , Chromones/pharmacology , Stereoisomerism , Anthozoa/chemistry , Animals , Crystallography, X-Ray , Fatty Acids/chemistry , Fatty Acids/isolation & purification , Biological Products/chemistry , Biological Products/pharmacology , Biological Products/isolation & purification , Molecular Structure
6.
Mar Drugs ; 22(4)2024 Apr 18.
Article En | MEDLINE | ID: mdl-38667799

Techniques for extracting important bioactive molecules from seafood byproducts, viz., bones, heads, skin, frames, fins, shells, guts, and viscera, are receiving emphasis due to the need for better valorization. Employing green extraction technologies for efficient and quality production of these bioactive molecules is also strictly required. Hence, understanding the extraction process parameters to effectively design an applicable optimization strategy could enable these improvements. In this review, statistical optimization strategies applied for the extraction process parameters of obtaining bioactive molecules from seafood byproducts are focused upon. The type of experimental designs and techniques applied to criticize and validate the effects of independent variables on the extraction output are addressed. Dominant parameters studied were the enzyme/substrate ratio, pH, time, temperature, and power of extraction instruments. The yield of bioactive compounds, including long-chain polyunsaturated fatty acids, amino acids, peptides, enzymes, gelatine, collagen, chitin, vitamins, polyphenolic constituents, carotenoids, etc., were the most studied responses. Efficiency and/or economic and quality considerations and their selected optimization strategies that favor the production of potential bioactive molecules were also reviewed.


Seafood , Animals , Aquatic Organisms , Humans , Biological Products/chemistry , Biological Products/isolation & purification
7.
J Chromatogr A ; 1716: 464643, 2024 Feb 08.
Article En | MEDLINE | ID: mdl-38232639

Peptidyl arginine deiminase 4 (PAD4) is an important biocatalytic enzymes involved in the conversion of protein arginine to citrulline, its dysregulation has a great impact on many physiological processes. Recently, PAD4 has emerged as a potential therapeutic target for the treatment of various diseases including rheumatoid arthritis (RA). Traditional Chinese Medicines (TCMs), also known as herbal plants, have gained great attention by the scientific community due to their good therapeutic performance and far fewer side effects observed in the clinical treatment. However, limited researches have been reported to screen natural PAD4 inhibitors from herbal plants. The color developing reagent (COLDER) or fluorescence based methods have been widely used in PAD4 activity assay and inhibitor screening. However, both methods measure the overall absorbance or fluorescence in the reaction solution, which are easy to be affected by the background interference due to colorful extracts from herbal plants. In this study, a simple, and robust high-performance liquid chromatography ultraviolet-visible (HPLC-UV) based method was developed to determine PAD4 activity. The proposed strategy was established based on COLDER principle, while used hydrophilic l-arginine instead of hydrophobic N-benzoyl-l-arginine ethyl ester (BAEE) as a new substrate to determine PAD4 inhibition activity of herbal extracts. The herbal extracts and PAD4 generated hydrophobic l-citrulline were successfully separated by the HPLC, and the developed method was optimized and validated with a known PAD4 inhibitor (GSK484) in comparison with COLDER assay. The IC50 value of GSK484 measured by HPLC-UV method was 153 nM, and the detection limit of the citrulline was 0.5 nmol, respectively, with a linear range of 0.5 nmol to 20 nmol. The IC50 value of the HPLC-UV method was improved by nearly three times compared with COLDER assay (527 nM), and the results indicated the reliability of PAD4 inhibition via HPLC-UV method. The inhibitory effect against PAD4 were fast and accurately screened for the twenty-four extracts from eight herbs. Among them, Ephedra Herba extracts showed significant inhibitory activity against the PAD4 with the IC50 values of three extracts (ethanol, ethyl acetate and water) ranging from 29.11 µg/mL to 41.36 µg/mL, which may help researchers to discover novel natural compounds holding high PAD4 inhibition activity.


Biological Products , Drugs, Chinese Herbal , Enzyme Inhibitors , Protein-Arginine Deiminase Type 4 , Chromatography, High Pressure Liquid , Citrulline , Protein-Arginine Deiminase Type 4/antagonists & inhibitors , Reproducibility of Results , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/isolation & purification , Enzyme Inhibitors/pharmacology , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/pharmacology , Drugs, Chinese Herbal/chemistry
8.
Chem Pharm Bull (Tokyo) ; 71(10): 756-765, 2023.
Article En | MEDLINE | ID: mdl-37779077

In this review, our resent pharmaceutical food science research for bio-functional molecules obtained from natural resources that contribute to i) suppression of postprandial blood glucose elevation and/or improvement of glucose tolerance and ii) reduction of visceral fat accumulation and improvement of lipid metabolism were summarized. Based on studies using MONOTORI science, salacinol (1), neokotalanol (4), and trans-tiliroside (20) have been approved or notified by the Consumer Affairs Agency in Japan as functional substances in food with health claims, Food for Specified Health Use and Food with Functional Claims.


Biological Products , Blood Glucose , Food Technology , Functional Food , Hypoglycemic Agents , Hypolipidemic Agents , Lipid Metabolism , Food Technology/trends , Japan , Intra-Abdominal Fat/drug effects , Lipid Metabolism/drug effects , Blood Glucose/drug effects , Humans , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/pharmacology , Hypolipidemic Agents/chemistry , Hypolipidemic Agents/isolation & purification , Hypolipidemic Agents/pharmacology , Hypoglycemic Agents/chemistry , Hypoglycemic Agents/isolation & purification , Hypoglycemic Agents/pharmacology
9.
Molecules ; 28(15)2023 Jul 31.
Article En | MEDLINE | ID: mdl-37570750

Matrine is a quinoline alkaloid extracted and separated from the dried root, fruit, and other parts of the plant Sophora flavescens using an organic solvent. Matrine exhibits a variety of biological activities and is widely used in pharmacy, agronomy, and other fields. Due to its low bioavailability, poor chemical stability, and toxicity to the central nervous system, a large number of researchers have searched for matrine derivatives with higher biological activity and safety by modifying its structure. In this review article, the research progress of matrine derivatives obtained using two methods (extraction from Sophora flavescens and structural modifications) from 2018 to 2022 in terms of pharmacological activity, mechanism of action, and structure-activity relationship are presented. The modification of matrine over the past five years has been mainly on the D-ring. Many new matrine alkaloids have been extracted from natural products, some of which have good pharmacological activity, which broadens the strategy for matrine structural modification in the future.


Biological Products , Matrines , Sophora flavescens , Matrines/chemical synthesis , Matrines/chemistry , Matrines/isolation & purification , Matrines/pharmacology , Biological Products/chemical synthesis , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/pharmacology , Sophora flavescens/chemistry , Plant Roots/chemistry , Fruit/chemistry , Structure-Activity Relationship , Humans , Animals , Cell Line
10.
Org Lett ; 24(40): 7328-7333, 2022 Oct 14.
Article En | MEDLINE | ID: mdl-36200745

Molecular network analysis of Streptomyces sp. CMB-MW079 detected rare phosphorylated natural products. Miniaturized cultivation profiling (MATRIX) established optimal conditions for the production, isolation, and identification of the polyketide δ-lactone phoslactomycin E (1) and new ester homologues, phoslactomycins J and K (2 and 3), as well as unprecedented heterocyclic analogues, the tetrahydrofuran cyclolactomycins A-D (4-7) and γ-lactone isocyclolactomycins A-C (8-10). We propose a biogenetic relationship linking these cometabolites with the known lactomycins A-C which were tentatively identified as minor cometabolites.


Biological Products , Lactones , Organophosphorus Compounds , Polyketides , Streptomyces , Wasps , Animals , Australia , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/pharmacology , Cell Line, Tumor , Esters/chemistry , Furans/chemistry , Humans , Lactones/chemistry , Lactones/isolation & purification , Lactones/pharmacology , Molecular Structure , Organophosphorus Compounds/chemistry , Organophosphorus Compounds/isolation & purification , Organophosphorus Compounds/pharmacology , Polyketides/chemistry , Polyketides/isolation & purification , Polyketides/pharmacology , Streptomyces/chemistry , Streptomyces/metabolism , Wasps/microbiology
11.
J Nat Prod ; 85(9): 2127-2134, 2022 09 23.
Article En | MEDLINE | ID: mdl-36044031

Cyclotides are mini-proteins with potent bioactivities and outstanding potential for agricultural and pharmaceutical applications. More than 450 different plant cyclotides have been isolated from six angiosperm families. In Brazil, studies involving this class of natural products are still scarce, despite its rich floristic diversity. Herein were investigated the cyclotides from Anchietea pyrifolia roots, a South American medicinal plant from the family Violaceae. Fourteen putative cyclotides were annotated by LC-MS. Among these, three new bracelet cyclotides, anpy A-C, and the known cycloviolacins O4 (cyO4) and O17 (cyO17) were sequenced through a combination of chemical and enzymatic reactions followed by MALDI-MS/MS analysis. Their cytotoxic activity was evaluated by a cytotoxicity assay against three human cancer cell lines (colorectal carcinoma cells: HCT 116 and HCT 116 TP53-/- and breast adenocarcinoma, MCF 7). For all assays, the IC50 values of isolated compounds ranged between 0.8 and 7.3 µM. CyO17 was the most potent cyclotide for the colorectal cancer cell lines (IC50, 0.8 and 1.2 µM). Furthermore, the hemolytic activity of anpy A and B, cyO4, and cyO17 was assessed, and the cycloviolacins were the least hemolytic (HD50 > 156 µM). This work sheds light on the cytotoxic effects of the anpy cyclotides against cancer cells. Moreover, this study expands the number of cyclotides obtained to date from Brazilian plant biodiversity and adds one more genus containing these molecules to the list of the Violaceae family.


Biological Products , Cyclotides , Plant Proteins , Violaceae , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/pharmacology , Brazil , Cell Line, Tumor , Cyclotides/chemistry , Cyclotides/isolation & purification , Cyclotides/pharmacology , Humans , Plant Proteins/chemistry , Plant Proteins/isolation & purification , Plant Proteins/pharmacology , Tandem Mass Spectrometry , Violaceae/chemistry
12.
J Biol Chem ; 298(9): 102300, 2022 09.
Article En | MEDLINE | ID: mdl-35931117

Natural products constitute and significantly impact many current anti-cancer medical interventions. A subset of natural products induces injury processes in malignant cells that recruit and activate host immune cells to produce an adaptive anti-cancer immune response, a process known as immunogenic cell death. However, a challenge in the field is to delineate forms of cell death and injury that best promote durable antitumor immunity. Addressing this with a single-cell chemical biology natural product discovery platform, like multiplex activity metabolomics, would be especially valuable in human leukemia, where cancer cells are heterogeneous and may react differently to the same compounds. Herein, a new ten-color, fluorescent cell barcoding-compatible module measuring six immunogenic cell injury signaling readouts are as follows: DNA damage response (γH2AX), apoptosis (cCAS3), necroptosis (p-MLKL), mitosis (p-Histone H3), autophagy (LC3), and the unfolded protein response (p-EIF2α). A proof-of-concept screen was performed to validate functional changes in single cells induced by secondary metabolites with known mechanisms within bacterial extracts. This assay was then applied in multiplexed activity metabolomics to reveal an unexpected mammalian cell injury profile induced by the natural product narbomycin. Finally, the functional consequences of injury pathways on immunogenicity were compared with three canonical assays for immunogenic hallmarks, ATP, HMGB1, and calreticulin, to correlate secondary metabolite-induced cell injury profiles with canonical markers of immunogenic cell death. In total, this work demonstrated a new phenotypic screen for discovery of natural products that modulate injury response pathways that can contribute to cancer immunogenicity.


Antineoplastic Agents , Biological Products , HMGB1 Protein , Metabolomics , Neoplasms , Single-Cell Analysis , Adenosine Triphosphate , Animals , Antineoplastic Agents/isolation & purification , Antineoplastic Agents/pharmacology , Biological Products/isolation & purification , Biological Products/pharmacology , Biomarkers , Calreticulin/metabolism , Cell Death/immunology , HMGB1 Protein/metabolism , Histones/metabolism , Humans , Metabolomics/methods , Neoplasms/immunology
13.
Mar Drugs ; 20(3)2022 Feb 28.
Article En | MEDLINE | ID: mdl-35323477

One new depsidone derivative, aspergillusidone H (3), along with seven known biosynthetically related chlorinated polyketides, were obtained from the Beibu Gulf coral-derived fungus Aspergillus unguis GXIMD 02505. Their structures were determined by comprehensive physicochemical and spectroscopic data interpretation. Notably, the X-ray crystal structure of 2 and the previously unknown absolute configuration of 8, assigned by ECD calculations, are described here for the first time. Compounds 1-5, 7 and 8 exhibited inhibition of lipopolysaccharide (LPS)-induced NF-κB in RAW 264.7 macrophages at 20 µM. In addition, the two potent inhibitors (2 and 7) dose-dependently suppressed RANKL-induced osteoclast differentiation without any evidence of cytotoxicity in bone marrow macrophages cells (BMMs). This is the first report of osteoclastogenesis inhibitory activity for the metabolites of these kinds. Besides, compounds 1, 2, 4, and 6-8 showed inhibitory activity against marine biofilm-forming bacteria, methicillin-resistant Staphylococcus aureus, Microbulbifer variabilis, Marinobacterium jannaschii, and Vibrio pelagius, with their MIC values ranging from 2 to 64 µg/mL. These findings provide a basis for further development of chlorinated polyketides as potential inhibitors of osteoclast differentiation and/or for use as anti-fouling agents.


Anthozoa/microbiology , Anti-Bacterial Agents , Aspergillus/chemistry , Biological Products , Osteogenesis/drug effects , Polyketides , Animals , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/pharmacology , Bacteria/drug effects , Bacteria/growth & development , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/pharmacology , Cells, Cultured , Lipopolysaccharides/pharmacology , Macrophages/cytology , Macrophages/drug effects , Mice , Molecular Structure , NF-kappa B/metabolism , Oceans and Seas , Polyketides/chemistry , Polyketides/isolation & purification , Polyketides/pharmacology , RANK Ligand
14.
Mar Drugs ; 20(3)2022 Mar 02.
Article En | MEDLINE | ID: mdl-35323485

The biological screening of 44 marine sponge extracts for the research of bioactive molecules, with potential application in the treatment of age-related diseases (cancer and Alzheimer's disease) and skin aging, resulted in the selection of Scopalina hapalia extract for chemical study. As no reports of secondary metabolites of S. hapalia were found in the literature, we undertook this research to further extend current knowledge of Scopalina chemistry. The investigation of this species led to the discovery of four new compounds: two butenolides sinularone J (1) and sinularone K (2), one phospholipid 1-O-octadecyl-2-pentanoyl-sn-glycero-3-phosphocholine (3) and one lysophospholipid 1-O-(3-methoxy-tetradecanoyl)-sn-glycero-3-phosphocholine (4) alongside with known lysophospholipids (5 and 6), alkylglycerols (7-10), epidioxysterols (11 and 12) and diketopiperazines (13 and 14). The structure elucidation of the new metabolites (1-4) was determined by detailed spectroscopic analysis, including 1D and 2D NMR as well as mass spectrometry. Molecular networking was also explored to complement classical investigation and unravel the chemical classes within this species. GNPS analysis provided further information on potential metabolites with additional bioactive natural compounds predicted.


4-Butyrolactone/analogs & derivatives , Biological Products , Phospholipids , Piperazines , Porifera/chemistry , 4-Butyrolactone/chemistry , 4-Butyrolactone/isolation & purification , Animals , Bays , Biological Products/chemistry , Biological Products/isolation & purification , Comoros , Magnetic Resonance Spectroscopy , Molecular Structure , Phospholipids/chemistry , Phospholipids/isolation & purification , Piperazines/chemistry , Piperazines/isolation & purification , Porifera/metabolism
15.
Mar Drugs ; 20(3)2022 Mar 04.
Article En | MEDLINE | ID: mdl-35323489

Species misidentification in the field of natural products is an acknowledged problem. These errors are especially widespread in sponge studies, albeit rarely assessed and documented. As a case study, we aim to revisit reports of isomalabaricane triterpenes, isolated from four demosponge genera: Jaspis, Geodia, Stelletta and Rhabdastrella. From a total of 44 articles (1981-2022), 27 unique vouchers were listed, 21 of which were accessed and re-examined here: 11 (52.4%) of these were misidentified. Overall, 65.9% of the studies published an incorrect species name: previously identified Jaspis and Stelletta species were all in fact Rhabdastrella globostellata. We conclude that isomalabaricane triterpenes were isolated from only two Rhabdastrella species and possibly one Geodia species. In addition to shedding a new light on the distribution of isomalabaricane triterpenes, this study is an opportunity to highlight the crucial importance of vouchers in natural product studies. Doing so, we discuss the impact of species misidentification and poor accessibility of vouchers in the field of sponge natural products. We advocate for stricter voucher guidelines in natural product journals and propose a common protocol of good practice, in the hope of reducing misidentifications in sponge studies, ensure reproducibility of studies, and facilitate follow-up work on the original material.


Biological Products , Porifera , Triterpenes , Animals , Biological Products/classification , Biological Products/isolation & purification , Porifera/chemistry , Porifera/classification , Reproducibility of Results , Triterpenes/classification , Triterpenes/isolation & purification
16.
Mar Drugs ; 20(3)2022 Mar 17.
Article En | MEDLINE | ID: mdl-35323511

Five undescribed butenolides including two pairs of enantiomers, (+)-asperteretal G (1a), (-)-asperteretal G (1b), (+)-asperteretal H (2a), (-)-asperteretal H (2b), asperteretal I (3), and para-hydroxybenzaldehyde derivative, (S)-3-(2,3-dihydroxy-3-methylbutyl)-4-hydroxybenzaldehyde (14), were isolated together with ten previously reported butenolides 4-13, from the coral-derived fungus Aspergillus terreus SCSIO41404. Enantiomers 1a/1b and 2a/2b were successfully purified by high performance liquid chromatography (HPLC) using a chiral column, and the enantiomers 1a and 1b were new natural products. Structures of the unreported compounds, including the absolute configurations, were elucidated by NMR and MS data, optical rotation, experimental and calculated electronic circular dichroism, induced circular dichroism, and X-ray crystal data. The isolated butenolides were evaluated for antibacterial, cytotoxic, and enzyme inhibitory activities. Compounds 7 and 12 displayed weak antibacterial activity, against Enterococcus faecalis (IC50 = 25 µg/mL) and Klebsiella pneumoniae (IC50 = 50 µg/mL), respectively, whereas 6 showed weak inhibitory effect on acetylcholinesterase. Nevertheless, most of the butenolides showed inhibition against pancreatic lipase (PL) with an inhibition rate of 21.2-73.0% at a concentration of 50 µg/mL.


4-Butyrolactone/analogs & derivatives , Anthozoa/microbiology , Anti-Bacterial Agents , Aspergillus/chemistry , Biological Products , Cholinesterase Inhibitors , Lipase/antagonists & inhibitors , 4-Butyrolactone/chemistry , 4-Butyrolactone/isolation & purification , 4-Butyrolactone/pharmacology , Acetylcholinesterase/metabolism , Animals , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/isolation & purification , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/toxicity , Bacteria/drug effects , Bacteria/growth & development , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/pharmacology , Cholinesterase Inhibitors/chemistry , Cholinesterase Inhibitors/isolation & purification , Cholinesterase Inhibitors/pharmacology , Molecular Structure , Stereoisomerism
17.
Mar Drugs ; 20(3)2022 Mar 18.
Article En | MEDLINE | ID: mdl-35323513

Two new cyclized thiolopyrrolone derivatives, namely, thiolopyrrolone A (1) and 2,2-dioxidothiolutin (2), together with the kn own compound, thiolutin (3) were identified from a marine-derived Streptomyces sp. BTBU20218885, which was isolated from a mud sample collected from the coastal region of Xiamen, China. Their chemical structures were determined using spectroscopic data, including HRESIMS, 1D and 2D NMR techniques. 1 possessed a unique unsymmetrical sulfur-containing thiolopyrrolone structure. All the compounds were tested for bioactivities against Staphylococcus aureus, Escherichia coli, Bacille Calmette-Guérin (BCG), Mycobacterium tuberculosis, and Candida albicans. 1 displayed antibacterial activities against BCG, M. tuberculosis, and S. aureus with minimum inhibitory concentration (MIC) values of 10, 10, and 100 µg/mL, respectively. Thiolutin (3) showed antibacterial activities against E. coli, BCG, M. tuberculosis, and S. aureus with MIC values of 6.25, 0.3125, 0.625, and 3.125 µg/mL, respectively.


Anti-Infective Agents , Aquatic Organisms/chemistry , Biological Products , Pyrroles , Streptomyces/chemistry , Anti-Infective Agents/chemistry , Anti-Infective Agents/isolation & purification , Anti-Infective Agents/pharmacology , Aquatic Organisms/genetics , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/pharmacology , Candida albicans/drug effects , Candida albicans/growth & development , Cyclization , Microbial Sensitivity Tests , Pyrroles/chemistry , Pyrroles/isolation & purification , Pyrroles/pharmacology , Streptomyces/genetics
18.
Mar Drugs ; 20(3)2022 Mar 20.
Article En | MEDLINE | ID: mdl-35323515

Aspergillus is well-known as the second-largest contributor of fungal natural products. Based on NMR guided isolation, three nitrogen-containing secondary metabolites, including two new compounds, variotin B (1) and coniosulfide E (2), together with a known compound, unguisin A (3), were isolated from the ethyl acetate (EtOAc) extract of the deep-sea fungus Aspergillus unguis IV17-109. The planar structures of 1 and 2 were elucidated by an extensive analysis of their spectroscopic data (HRESIMS, 1D and 2D NMR). The absolute configuration of 2 was determined by comparison of its optical rotation value with those of the synthesized analogs. Compound 2 is a rare, naturally occurring substance with an unusual cysteinol moiety. Furthermore, 1 showed moderate anti-inflammatory activity with an IC50 value of 20.0 µM. These results revealed that Aspergillus unguis could produce structurally diverse nitrogenous secondary metabolites, which can be used for further studies to find anti-inflammatory leads.


Anti-Inflammatory Agents , Aspergillus/chemistry , Biological Products , Peptides, Cyclic , Sulfides , Animals , Anti-Inflammatory Agents/chemistry , Anti-Inflammatory Agents/isolation & purification , Anti-Inflammatory Agents/metabolism , Aquatic Organisms , Aspergillus/metabolism , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/metabolism , Interleukin-6/metabolism , Lipopolysaccharides/pharmacology , Mice , Molecular Structure , Nitric Oxide/metabolism , Nitric Oxide Synthase Type II/metabolism , Nitrogen/chemistry , Peptides, Cyclic/chemistry , Peptides, Cyclic/isolation & purification , Peptides, Cyclic/metabolism , Pyrrolidinones/chemistry , Pyrrolidinones/isolation & purification , Pyrrolidinones/metabolism , RAW 264.7 Cells , Secondary Metabolism , Sulfides/chemistry , Sulfides/isolation & purification , Sulfides/metabolism
19.
Mar Drugs ; 20(3)2022 Mar 20.
Article En | MEDLINE | ID: mdl-35323514

The world is already facing the devastating effects of the SARS-CoV-2 pandemic. A disseminated mucormycosis epidemic emerged to worsen this situation, causing havoc, especially in India. This research aimed to perform a multitargeted docking study of marine-sponge-origin bioactive compounds against mucormycosis. Information on proven drug targets and marine sponge compounds was obtained via a literature search. A total of seven different targets were selected. Thirty-five compounds were chosen using the PASS online program. For homology modeling and molecular docking, FASTA sequences and 3D structures for protein targets were retrieved from NCBI and PDB databases. Autodock Vina in PyRx 0.8 was used for docking studies. Further, molecular dynamics simulations were performed using the IMODS server for top-ranked docked complexes. Moreover, the drug-like properties and toxicity analyses were performed using Lipinski parameters in Swiss-ADME, OSIRIS, ProTox-II, pkCSM, and StopTox servers. The results indicated that naamine D, latrunculin A and S, (+)-curcudiol, (+)-curcuphenol, aurantoside I, and hyrtimomine A had the highest binding affinity values of -8.8, -8.6, -9.8, -11.4, -8.0, -11.4, and -9.0 kcal/mol, respectively. In sum, all MNPs included in this study are good candidates against mucormycosis. (+)-curcudiol and (+)-curcuphenol are promising compounds due to their broad-spectrum target inhibition potential.


Antifungal Agents , Biological Products , COVID-19 Drug Treatment , Mucormycosis/drug therapy , Porifera/chemistry , SARS-CoV-2 , Animals , Antifungal Agents/chemistry , Antifungal Agents/isolation & purification , Antifungal Agents/pharmacokinetics , Antifungal Agents/toxicity , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/pharmacokinetics , Biological Products/toxicity , COVID-19/complications , Coinfection , Fungal Proteins/chemistry , Molecular Docking Simulation , Molecular Dynamics Simulation , Mucormycosis/etiology , Toxicity Tests, Acute
20.
Mar Drugs ; 20(3)2022 Mar 20.
Article En | MEDLINE | ID: mdl-35323517

Three complex polyoxygenated diterpenoids possessing uncommon tetradecahydro-2,13:6,9-diepoxybenzo[10]annulene scaffold, namely ximaoornatins A-C (1-3), one new eunicellin-type diterpene, litophynin K (4), and a related known compound, litophynol B (5) were isolated from the South China Sea soft coral Sinularia ornata. The structures and absolute configurations of 1-4 were established by extensive spectroscopic analysis, X-ray diffraction analysis, and/or modified Mosher's method. A plausible biosynthetic relationship of 1 and its potential precursor 4 was proposed. In a bioassay, none of the isolated compounds showed obvious anti-inflammatory activity on LPS-induced TNF-α release in RAW264.7 macrophages and PTP1B inhibitory effects.


Anthozoa/chemistry , Biological Products , Diterpenes , Animals , Anthozoa/metabolism , Biological Products/chemistry , Biological Products/isolation & purification , Biological Products/metabolism , Diterpenes/chemistry , Diterpenes/isolation & purification , Diterpenes/metabolism , Lipopolysaccharides/pharmacology , Mice , Models, Molecular , Molecular Structure , Protein Tyrosine Phosphatase, Non-Receptor Type 1/chemistry , RAW 264.7 Cells , Tumor Necrosis Factor-alpha/metabolism
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