Development of an animal adaptability index: Application for dairy cows.

The objective of this study was designed to evaluate the association between thermoregulatory responses, hormonal, hematological and serum biochemical values features aiming to propose an adaptability index (AI) for dairy cows under tropical conditions. Thirty adult dairy cows were used, including 15 Sindi and 15 Girolando breeds with mean weight of 338.52 ± 42.79 kg and 487.54 ± 60.67 kg, respectively. These data included rectal temperature (RT) and respiratory rate (RR). For the serum of blood sample, the levels of glucose (GLU), cholesterol (CHO), triglycerides (TRI), total protein (TP), creatinine (CRE), albumin (ALB), urea (URE), aspartate aminotrasferase (AST) and alanine aminotrasferase (ALT) and hormonal concentrations (triiodothyronine - T3 and thyroxine - T4). For the total blood samples were analyzed for hematology variables: red blood cell count (RBC); hemoglobin concentration (HC); packet cell volume (PCV); mean corpuscular volume (MCV); white blood cell (WBC). The AI was development using multivariate analysis to "weigh" the influence of each variable in the animal responses. The variables more important for adaptive aspects of Sindi and Girolando cows were respectively: GLU; MCV; AST; PCV; RBC; HE; TP; ALB; ALT; RR; T4; RT; T3; URE; CHO; TRI; CRE; WBC and ALB; GLU; TP; AST; RR; ALT; CRE; CHO; RT; RBC; T4; HE; PCV; MCV; URE; TRI; WBC; T3. The difference between breeds was just over 8% for AI. We developed a preliminary AI, able to measure the level of adaptability of dairy cows under tropical region. The methodological framework has potential to inform decision-makers on the adaptability animal conditions and high inference of the blood values from adaptability of cows.

Genetics and genomics of uniformity and resilience in livestock and aquaculture species: A review.

Genetic control of residual variance offers opportunities to increase uniformity and resilience of livestock and aquaculture species. Improving uniformity and resilience of animals will improve health and welfare of animals and lead to more homogenous products. Our aims in this review were to summarize the current models and methods to study genetic control of residual variance, genetic parameters and genomic results for residual variance and discuss future research directions. Typically, the genetic coefficient of variation is high (median = 0.27; range 0-0.86) and the heritability of residual variance is low (median = 0.01; range 0-0.10). Higher heritabilities can be achieved when increasing the number of records per animal. Divergent selection experiments have supported the feasibility of selecting for high or low residual variance. Genomic studies have revealed associations in regions related to stress, including those from the heat shock protein family. Although the number of studies is growing, genetic control of residual variance is still poorly understood, but big data and genomics offer great opportunities.

Genetic diversity and selection signatures of the beef 'Charolais de Cuba' breed.

In this study, we used BovineSNP50 Genotyping BeadChip data to estimate the structure, putative ancestral origin as well as to identify regions with selective sweeps that may have had an important role in the adaptation to tropical conditions of the 'Charolais de Cuba' (CHCU) breed. According to a principal component analysis, CHCU samples cluster together with taurine breeds with an estimated 93% of taurus ancestral alleles. Despite the short period since importation, we detected differentiation (Fst = 0.049) between the French Charolaise (CHA) and CHCU. However, CHA breed was the closest breed to CHCU followed by other hybrids breed with a clear CHA origin. Linkage disequilibrium (r2) decay tends to be lower in CHCU compared to CHA probably due to a less intense artificial selection programs of CHCU. Signals of recent adaptation to tropical conditions between CHCU and CHA were identified. Genes mapping within those regions reflect different functions related to immunity, metabolic changes and heat tolerance (CHCU) and muscle development and meat quality (CHA) that may have had an important role in the phenotypic differentiation of these breeds. Further studies will expand our knowledge on the molecular basis of adaptation of cattle to tropical conditions and molecular process associated with meat quality traits.

International survey on the use and welfare of zebrafish Danio rerio in research.

A survey was conducted regarding zebrafish Danio rerio use for scientific research with a focus on: anaesthesia and euthanasia; housing and husbandry; breeding and production; refinement opportunities. A total of 98 survey responses were received from laboratories in 22 countries in Europe, North America, South America, Asia and Australia. There appears a clear and urgent need to identify the most humane methods of anaesthesia and euthanasia. Aversive responses to MS-222 were widely observed raising concerns about the use of this anaesthetic for D. rerio. The use of anaesthesia in fin clipping for genetic identification is widely practised and there appears to be an opportunity to further develop less invasive methods and refine this process. Optimization (and potentially standardization) of feeding is an area for further investigation. Given that diet and body condition can have such profound effects on results of experiments, differences in practice could have significant scientific implications. Further research into transition between dark and light phases in the laboratory appears to represent an opportunity to establish best practice. Plants and gravel were not considered practical by many laboratories. The true value and benefits need to be established and communicated. Overproduction is a concern both from ethical and financial viewpoints. There is an opportunity to further reduce wastage of D. rerio. There are clear concerns and opportunities for the scientific community to work together to further improve the welfare of these important laboratory models.

Evaluation of body weight and visual scores for genetic improvement of Nelore cattle.

The aims of our study were to estimate genetic parameters for body weight and visual scores and to evaluate their inclusion as selection criteria in the Nelore breeding program in Brazil. The traits studied were the body weight adjusted to 210 (W210) and to 450 (W450) days of age and visual scores for body structure, finishing precocity, and muscling evaluated at weaning (BSW, FPW, and MSW) and yearling (BSY, FPY, and MSY) ages. A total of 33,242, 26,259, 23,075, and 26,057 observations were considered to analyze W210, W450, and visual scores at weaning and yearling. The significant (P < 0.05) fixed effects for all traits were farm, birth season, birth year, sex, and management group. Single-trait analyses were performed to define the most fitting model to our data using the average information restricted maximum likelihood algorithm, for weaning traits. Subsequently, these models were used in single- and two-trait analyses considering the Bayesian inference algorithm. Two-trait Bayesian analyses resulted in average direct heritability estimates for BSW, FPW, MSW, W210, BSY, FPY, MSY, and W450 of 0.28, 0.30, 0.27, 0.28, 0.40, 0.44, 0.39, and 0.50, respectively. Genetic correlations varied from 0.40 to 0.96. Benefits to animal performance can best be achieved by considering body structure, finishing precocity, and muscling as selection criteria in the Nelore breeding programs. The decision to use visual scores measured at weaning should be considered in order to decrease generation interval and assist pre-selecting individuals, expecting carcass improvements in the future progeny.

Genetic associations between scrotal circumference and female reproductive traits in Nelore cattle.

The objective of this study was to estimate genetic associations between scrotal circumference obtained at 12 (SC12; mean of 21.46 ± 2.74 cm), 15 (SC15; mean of 25.31 ± 3.19 cm), and 18 mo of age (SC18; mean of 26.77 ± 2.95 cm) and reproductive traits measured directly in heifers (age at first calving [AFC]: mean of 1,062.06 ± 114.79 d; heifer pregnancy at 16 mo of age [HP]: mean of 15.4 ± 0.36%; and subsequent rebreeding of primiparous heifers [HR]: mean of 27.1 ± 0.44%) using Bayesian inference to evaluate the possible inclusion of these traits as selection criteria in beef cattle breeding programs. Genetic gains comparisons were also estimated. A total of 53,683 data of Nelore animals born between 1990 and 2006, obtained from the livestock archive of Agropecuária Jacarezinho Ltda. (Valparaíso, São Paulo, Brazil), were analyzed. Two-trait analysis provided heritability estimates of 0.35 ± 0.08, 0.40 ± 0.04, 0.37 ± 0.03, 0.21 ± 0.01, 0.55 ± 0.03, and 0.17 ± 0.03 for SC12, SC15, SC18, AFC, HP, and HR, respectively. The genetic correlations between scrotal circumference and AFC, HP, and HR were -0.42 ± 0.12, 0.43 ± 0.13, and -0.13 ± 0.17, respectively, for SC12; -0.25 ± 0.07, 0.26 ± 0.07, and -0.11 ± 0.10, respectively, for SC15; and -0.22 ± 0.06, 0.39 ± 0.06, and 0.11 ± 0.09, respectively, for SC18. The direct selection response for HP was 0.12%, but when HP is indirectly selected based on the scrotal circumferences, the gains on these correlated responses were higher (0.16, 0.16, and 0.22%) for selection based on SC12, SC15, and SC18, respectively. These findings suggest that the selection of animals for larger scrotal circumference, particularly at 12 mo of age, should result in higher rates of HP and younger AFC of Nelore females.

Genotype × environment interaction for age at first calving, scrotal circumference, and yearling weight in Nellore cattle using reaction norms in multitrait random regression models.

The aim of this study was to evaluate the effect of genotype × environment interaction (G×E) on age at first calving (AFC), scrotal circumference (SC), and yearling weight (YW) and to estimate genetic correlations between these traits in Nellore cattle using reaction norms in multitrait random regression models. In this study, 28,871, 41,386, and 89,152 records of Nellore cattle for AFC, SC, and YW, respectively, were used. The data were obtained from farms located in the north, northeast, midwest, and southeast regions of Brazil that participate in the DeltaGen Breeding Program. Environmental levels were defined as a function of contemporary groups, that is, animals born in the same herd and year, from the same management group (from birth to yearling), and of the same sex. Postweaning weight gain was used as a criterion to evaluate the environmental conditions for all traits. For reaction norm analyses, residual variances were modeled with homogeneous and heterogeneous classes. The model for SC and YW included the fixed effects of contemporary group and age of the animal as a covariate as well as random direct additive genetic and residual effects. The same model, excluding the covariate age of the animal, was used for AFC. The heritability estimates were low to high for AFC (0.09 to 0.50), high for SC (0.51 to 0.67), and moderate to high for YW (0.33 to 0.71). The genetic correlations (within each trait) along the environmental levels varied from -0.27 to 1.0 for AFC, from 0.73 to 1.0 for SC, and from 0.26 to 1.0 for YW. The genetic correlations between different traits in different environments varied from -0.14 to -0.60 between AFC and SC, from -0.05 to -0.32 between AFC and YW, and from -0.05 to 0.72 between YW and SC. The genetic correlations have had different magnitudes for AFC, SC, and YW, which could indicate the presence of G×E. The present results should support researchers and farmers in defining selection criteria to improve growth traits and sexual precocity. Our results suggest that animals for breeding have to be selected in the same environment and management conditions as their progeny will be reared.

Impacts of reproductive technologies on beef production in South America.

The majority of beef cow herds in South America are constituted by Bos indicus females, which have particular reproductive features that contribute to reduced reproductive efficiency compared with that of B. taurus cohorts. Hence, several alternatives to enhance reproductive efficiency of B. indicus heifers and cows have been developed to address their inherent reproductive shortcomings. These research-based technologies are being described in detail within this chapter and have already made an impact on South American B. indicus-based production systems. These include the following: (a) hormonal protocols to induce puberty in nulliparous heifers or estrous cyclicity in postpartum cows to maximize their reproductive performance during the subsequent breeding season, (b) hormonal protocols to synchronize estrus and/or ovulation in B. indicus females to exploit their reproductive responses to artificial insemination, and (c) genetic and environmental factors that influence reproductive success in beef herds, including reproductive diseases and excitable temperament of B. indicus females, that have been investigated to support/promote the development of appropriate mitigation technologies.

Genetic parameter estimates and principal component analysis of breeding values of reproduction and growth traits in female Canchim cattle.

Phenotypic data from female Canchim beef cattle were used to obtain estimates of genetic parameters for reproduction and growth traits using a linear animal mixed model. In addition, relationships among animal estimated breeding values (EBVs) for these traits were explored using principal component analysis. The traits studied in female Canchim cattle were age at first calving (AFC), age at second calving (ASC), calving interval (CI), and bodyweight at 420 days of age (BW420). The heritability estimates for AFC, ASC, CI and BW420 were 0.03±0.01, 0.07±0.01, 0.06±0.02, and 0.24±0.02, respectively. The genetic correlations for AFC with ASC, AFC with CI, AFC with BW420, ASC with CI, ASC with BW420, and CI with BW420 were 0.87±0.07, 0.23±0.02, -0.15±0.01, 0.67±0.13, -0.07±0.13, and 0.02±0.14, respectively. Standardised EBVs for AFC, ASC and CI exhibited a high association with the first principal component, whereas the standardised EBV for BW420 was closely associated with the second principal component. The heritability estimates for AFC, ASC and CI suggest that these traits would respond slowly to selection. However, selection response could be enhanced by constructing selection indices based on the principal components.

Design of a village breeding programme for a llama population in the High Andes of Bolivia.

No national breeding programme for llamas is in place in Bolivia. Initiatives for genetic improvement are rarely found and are usually carried out by NGOs working in rural development or improvement of livestock production or research stations. Farmers in the Province of Ayopaya in the District of Cochabamba have formed a breeders' organization with the aim of improving fibre production. In this study, a detailed outline of a breeding programme with a focus on organizational and technical details is described. Facing constraints like illiteracy of farmers, bad infrastructure and lack of finances, a simple breeding programme is set up. The breeding goal is a higher fleece weight while keeping the fleece quality at the current high level. Greasy fleece weight and fibre diameter are identified as main selection criteria. Mass selection of males is carried out. Selected males are either exchanged between farmers and used in the herds or are kept during the mating season in a central mating station owned by the breeders' organization. Model calculations were carried out with the program zplan, which is based on a deterministic approach. zplan evaluates the genetic and economic efficiency of breeding strategies considering one cycle of selection. Scenarios with only intra-herd use, using only the central mating station or combinations of those were compared in terms of expected genetic gain and expected increase of inbreeding. Fastest genetic progress is achieved when the males are kept in a central mating station as the selection intensity is on a high level. Rates of inbreeding vary between 0.08 and 0.32% per generation.

Evidence of Chlamydophila psittaci infection in captive Amazon parrots in Brazil.

The prevalence of Chlamydophila psittaci (formerly Chlamydia psittaci) infection was assessed in 95 apparently healthy, captive Amazon parrots from three breeder collections in southeastern and west-central Brazil. Cloacal swabs from 95 birds were tested for chlamydial antigen, which was detected by direct immunofluorescence (DIF), and serum samples from 44 of these birds were tested for antibodies to C. psittaci using an enzyme-linked immunosorbent assay. The prevalences of active infection as detected by DIF were 16.7%, 22.2%, and 56.1%, and seroprevalences were 100%, 87.5%, and 60% in flocks A, B, and C, respectively. We can therefore infer that C. psittaci may be widespread in captive parrot populations in Brazil.

Evaluation of direct fluorescent antibody test for the diagnosis of bovine genital campylobacteriosis.

The direct fluorescent antibody test (DFAT) for the diagnosis of Bovine Genital Campylobacteriosis was assessed for its detection limit, observer effect, sensitivity and specificity. In addition, the specificity of the fluorescent conjugate was tested against Campylobacter sp, Arcobacter sp, Helicobacter sp, E. coli and other bacteria from the preputial flora. Ten - fold dilutions of C. fetus subsp. venerealis NCTC 10354 in PBS or preputial washings with or without centrifugation were used. All experiments were done in duplicate by three observers. Positive and negative controls were included in each assay. The detection limits of DFAT were 10(4) CFU/ ml for PBS and non - centrifuged preputial washings and 10(2) CFU/ ml for centrifuged preputial washings. There was no observer effect. The sensitivity and specificity of DFAT were 92.59% and 88.89%, respectively. The DFAT was observed to be sensitive, specific and the effect of experienced observers was minimal on test performance.

Assessment of sperm morphology in zebu bulls, under field conditions in the tropics.

Sperm morphology was studied in 302 extensively managed Zebu bulls (aged 1.5-9 years), classified as sound (n=166) or unsound (n=136) for breeding, under field conditions in the dry tropics of Costa Rica. Single semen samples were collected by electro-ejaculation and fixed in formol-saline solution immediately after collection. Sperm morphology was determined in the field on wet smears using a microscope equipped with phase-contrast optics, and further determined in the laboratory on air-dried smears stained with carbol-fuchsin. The frequencies of sperm abnormalities (such as abnormal acrosome, head, neck, mid-piece, tail, and presence of cytoplasmic droplets) were recorded as a percentage of the total number of counted spermatozoa (400 cells). Zebu bulls considered unsound for breeding showed a higher mean prevalence (p < 0.05) of knobbed acrosomes (4.0 versus 0.9%), head defects [specifically, nuclear invaginations and heads with abnormal shapes and sizes (27.6 versus 4.0%)], abnormal tails (11.2 versus 4.7%), and proximal droplets (8.4 versus 1.6%), compared with bulls considered sound for breeding. In these latter bulls, the abnormality most commonly seen was the presence of single bent tails with an entrapped cytoplasmic droplet (3.0 +/- 3.7%). Young Zebu bulls (i.e. bulls under 2 years of age) showed a higher percentage of missing acrosomes, and proximal cytoplasmic droplets, than older sires (12.1 versus 2.4%, and 23.9 versus 3.6%, respectively; p < 0.05), interpreted as an indication of low ejaculation frequency and sexual immaturity, respectively. Bulls with a long scrotum and soft testicular consistency (TC) at palpation showed higher percentages of abnormal sperm heads in the ejaculate than bulls with a normal scrotal length (SL) and a normal TC (32.7 versus 12.8% and 30.7 versus 10.3%, respectively; p < 0.05). In addition, Zebu bulls with a scrotal circumference (SC) < or = 30 cm showed a higher prevalence of proximal cytoplasmic droplets than bulls whose SC was > 30 cm (9.8 versus 2.6%, p < 0.05). A higher mean percentage of abnormally sized and shaped heads, especially undeveloped and narrow at the base, was more frequently found in stained smears than in unstained samples (26.0 versus 9.9%, p < 0.05), which clearly underlines the importance of using both stained and wet smears when assessing sperm head morphology. However, for a quick assessment of sperm morphology under field, tropical conditions, phase-contrast microscopy provides useful information for the spermiogramme evaluation.

Breeding soundness evaluation of extensively managed bulls in Costa Rica.

This paper describes the results of single breeding soundness evaluations (BSE) in 898 Bos indicus, Bos taurus and B. indicus x B. taurus bulls, 1 to 12 yr old, extensively reared in different climatic regions of Costa Rica and representing approximately 2% of the total breeding bull population. Thirty-three percent (n = 296) of the bulls were classified as unsound for breeding owing to clinical problems (9.1%, n = 82), low scrotal circumference (SC) being the most common finding, followed by unsatisfactory sperm morphology (23.9%, n = 214). The prevalence of bulls unsound for breeding was lowest in Bos indicus (29%, P < 0.01), intermediate in B. taurus (41%), and highest in B. indicus x B. taurus (48%). The percentages of abnormal sperm heads, acrosomes and midpieces tended to be higher in the ejaculates of bulls with softer testicular consistency (P < 0.001), a long scrotum (P < 0.01) or a low SC (P < 0.05), and such bulls were more often classified as being unsound for breeding (P < 0.05). Frequencies of sperm abnormalities were higher in bulls < 2 yr of age than in older males (P < 0.01) and were highest in B. indicus x B. taurus bulls (P < 0.001). The results confirm differences between species in their adaptability to a tropical environment and support earlier evidence of an association between SC, testicular consistency and scrotal length clinical parameters, and testicular function in bulls.

Efecto de la furazolidona sobre el glutatión sanguíneo del pollo de engorda / Effec of furazolidone on chicks blood glutathione

El objetivo de este trabajo fue establecer si la furazolidona utiliza el sistema detoxificante de glutatión en el organismo, mediante la determinación de la cantidad (µmol/ml de sangre) de glutatión total (GT), glutatión oxidado (GSSG), y glutatión reducido (GSH) durante las 5 semanas de vida del pollo de engorda que no consumió aditivos (testigo), comparado con los niveles de GT, GSSG y GSH sanguíneo de las aves que consumieron furazolidona durante las 5 primeras semanas de vida. Hubo diferencia significativa entre el GT (µmol/ml de sangre) y el peso corporal de pollos del grupo testigo y el que consumió furazolidona (55 ppm en el alimento) (R²= -0.709; P< 0.05, y = 2.15 - 0.607x y R²=-0.820 P< 0.05, y = 2.17 -0.61x respectivamente) hubo diferencia significativa (P< 0.05) entre el peso de los pollos del grupo testigo y el de los que consumieron furazolidona (751.3 vs 884.35 g respectivamente)