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2.
Cells ; 10(8)2021 08 11.
Article En | MEDLINE | ID: mdl-34440826

Sanqi, a traditional Chinese herb, is widely used for cardiovascular diseases, and its neuroprotective effects against oxidative stress were recently discovered. The purpose of this study was to investigate whether Sanqi-derived compound K (Sanqi-CK), an active metabolite of Sanqi, could protect melanocytes from oxidative stress. Cultured human primary skin epidermal melanocytes (HEMn-MPs) were treated with hydrogen peroxide (H2O2) in the presence or absence of Sanqi-CK. Sanqi-CK exhibited protective effects against H2O2-induced cell death by reducing oxidative stress. In addition, treatment with Sanqi-CK reversed the decreased glutathione reductase activity and decreased ratio of reduced glutathione (GSH)/oxidized glutathione (GSSG) seen in H2O2-treated melanocytes. Furthermore, topical application of Sanqi-CK alleviated leukoderma in guinea pigs, a disorder characterized by melanocyte cell death resulting from rhododendrol-induced oxidative stress. Taken together, these data suggest that Sanqi-CK protects melanocytes against oxidative stress, and its protective effects are associated with modulating the redox balance between GSH and GSSG and activating glutathione reductase. Thus, Sanqi-CK may be a good candidate for preventing melanocyte loss in oxidative-stress-associated pigmentary disorders.


Drugs, Chinese Herbal/chemistry , Ginsenosides/pharmacology , Hypopigmentation/drug therapy , Melanocytes/drug effects , Oxidative Stress/drug effects , Animals , Butanols/toxicity , Cell Death/drug effects , Cells, Cultured , Ginsenosides/administration & dosage , Glutathione/metabolism , Glutathione Reductase/metabolism , Guinea Pigs , Humans , Hydrogen Peroxide/pharmacology , Hypopigmentation/chemically induced , Melanins/metabolism , Melanocytes/metabolism , Oxidation-Reduction
3.
Sci Rep ; 11(1): 3167, 2021 02 04.
Article En | MEDLINE | ID: mdl-33542403

A wide variety of environmental contaminants has been shown to disrupt immune functions of fish and may compromise their defense capability against pathogens. Immunotoxic effects, however, are rarely considered in ecotoxicological testing strategies. The aim of this study was to systematically evaluate the suitability of an in vitro immuno-assay using selected fish immune parameters to screen for chemicals with known immunotoxic potential and to differentiate them from non-immunotoxicants. Non-stimulated and lipopolysaccharide-stimulated head kidney leukocytes of rainbow trout (Oncorhynchus mykiss) were exposed for 3 h or 19 h to chemicals with different modes of action. As immune parameters, phagocytosis activity, oxidative burst activity and cytokine transcription (IL-1ß, TNFα, IL-10) were examined, accompanied by in silico modelling. The immunotoxicants dexamethasone, benzo(a)pyrene, ethinylestradiol and bisphenol A significantly altered the immune parameters at non-cytotoxic concentrations whereas diclofenac had only weak effects. However, the two baseline chemicals with no known immunotoxic potential, butanol and ethylene glycol, caused significant effects, too. From our results it appears that the in vitro fish leukocyte assay as performed in the present study has only a limited capacity for discriminating between immunotoxicants and non-immunotoxicants.


Fish Proteins/genetics , Immunotoxins/toxicity , Leukocytes/drug effects , Oncorhynchus mykiss/immunology , Phagocytosis/drug effects , Respiratory Burst/drug effects , Water Pollutants, Chemical/toxicity , Animals , Benzhydryl Compounds/toxicity , Benzo(a)pyrene/toxicity , Butanols/toxicity , Dexamethasone/toxicity , Diclofenac/toxicity , Ethinyl Estradiol/toxicity , Ethylene Glycol/toxicity , Female , Fish Proteins/immunology , Gene Expression Regulation , Head Kidney/cytology , Head Kidney/immunology , Interleukin-10/genetics , Interleukin-10/immunology , Interleukin-1beta/genetics , Interleukin-1beta/immunology , Leukocytes/cytology , Leukocytes/immunology , Phagocytosis/immunology , Phenols/toxicity , Primary Cell Culture , Respiratory Burst/immunology , Transcription, Genetic , Tumor Necrosis Factor-alpha/genetics , Tumor Necrosis Factor-alpha/immunology
4.
Appl Microbiol Biotechnol ; 105(6): 2455-2472, 2021 Mar.
Article En | MEDLINE | ID: mdl-33606076

Butanol inhibits bacterial activity by destroying the cell membrane of Clostridium acetobutylicum strains and altering functionality. Butanol toxicity also results in destruction of the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS), thereby preventing glucose transport and phosphorylation and inhibiting transmembrane transport and assimilation of sugars, amino acids, and other nutrients. In this study, based on the addition of exogenous butanol, the tangible macro indicators of changes in the carbon ion beam irradiation-mutant Y217 morphology were observed using scanning electron microscopy (SEM). The mutant has lower microbial adhesion to hydrocarbon (MATH) value than C. acetobutylicum ATCC 824 strain. FDA fluorescence intensity and conductivity studies demonstrated the intrinsically low membrane permeability of the mutant membrane, with membrane potential remaining relatively stable. Monounsaturated FAs (MUFAs) accounted for 35.17% of the mutant membrane, and the saturated fatty acids (SFA)/unsaturated fatty acids (UFA) ratio in the mutant cell membrane was 1.65. In addition, we conducted DNA-level analysis of the mutant strain Y217. Expectedly, through screening, we found gene mutant sites encoding membrane-related functions in the mutant, including ATP-binding cassette (ABC) transporter-related genes, predicted membrane proteins, and the PTS transport system. It is noteworthy that an unreported predicted membrane protein (CAC 3309) may be related to changes in mutant cell membrane properties. KEY POINTS: • Mutant Y217 exhibited better membrane integrity and permeability. • Mutant Y217 was more resistant to butanol toxicity. • Some membrane-related genes of mutant Y217 were mutated.


Butanols , Clostridium acetobutylicum , 1-Butanol , Butanols/toxicity , Membrane Proteins
5.
Microbiologyopen ; 10(1): e1146, 2021 01.
Article En | MEDLINE | ID: mdl-33319506

The main bottleneck in the return of industrial butanol production from renewable feedstock through acetone-butanol-ethanol (ABE) fermentation by clostridia, such as Clostridium beijerinckii, is the low final butanol concentration. The problem is caused by the high toxicity of butanol to the production cells, and therefore, understanding the mechanisms by which clostridia react to butanol shock is of key importance. Detailed analyses of transcriptome data that were obtained after butanol shock and their comparison with data from standard ABE fermentation have resulted in new findings, while confirmed expected population responses. Although butanol shock resulted in upregulation of heat shock protein genes, their regulation is different than was assumed based on standard ABE fermentation transcriptome data. While glucose uptake, glycolysis, and acidogenesis genes were downregulated after butanol shock, solventogenesis genes were upregulated. Cyclopropanation of fatty acids and formation of plasmalogens seem to be significant processes involved in cell membrane stabilization in the presence of butanol. Surprisingly, one of the three identified Agr quorum-sensing system genes was upregulated. Upregulation of several putative butanol efflux pumps was described after butanol addition and a large putative polyketide gene cluster was found, the transcription of which seemed to depend on the concentration of butanol.


Biological Transport/genetics , Butanols/toxicity , Cell Membrane/metabolism , Clostridium beijerinckii/drug effects , Clostridium beijerinckii/genetics , Bioreactors/microbiology , Clostridium beijerinckii/metabolism , Fatty Acids/metabolism , Gene Expression Profiling , Glucose/metabolism , Glycolysis/genetics , Glycolysis/physiology , Heat-Shock Proteins/metabolism , Plasmalogens/biosynthesis , Quorum Sensing/genetics , Stress, Physiological/genetics
6.
Toxins (Basel) ; 12(11)2020 11 02.
Article En | MEDLINE | ID: mdl-33147822

Cattle occasionally develop brassica-associated liver disease (BALD) and photosensitisation when grazing turnip or swede (Brassica spp.) forage crops. The liver toxin in these brassica varieties has yet to be discovered. Progoitrin is the dominant glucosinolate in incriminated crops. Apart from goitrin, progoitrin hydrolysis yields the nitrile, 1-cyano-2-hydroxy-3-butene (CHB), and the epithionitrile, 1-cyano-2-hydroxy-3,4-epithiobutane (CHEB). The two compounds were custom-synthesised. In a small pilot trial, New Zealand White rabbits were given either CHB or CHEB by gavage. Single doses of 0.75 mmol/kg of CHB or 0.25 mmol/kg of CHEB were subtoxic and elicited subclinical effects. Higher doses were severely hepatotoxic, causing periportal to massive hepatic necrosis associated with markedly elevated serum liver biomarkers often resulting in severe illness or death within 24 h. The possibility that one or both of these hepatotoxic nitriles causes BALD in cattle requires further investigation.


Alkenes/toxicity , Butanols/toxicity , Chemical and Drug Induced Liver Injury/etiology , Glucosinolates/toxicity , Liver/drug effects , Nitriles/toxicity , Animals , Biomarkers/blood , Chemical and Drug Induced Liver Injury/blood , Chemical and Drug Induced Liver Injury/pathology , Dose-Response Relationship, Drug , Liver/metabolism , Liver/pathology , Male , Necrosis , Pilot Projects , Rabbits , Risk Assessment , Toxicity Tests
9.
Food Chem Toxicol ; 134 Suppl 2: 110999, 2019 Dec.
Article En | MEDLINE | ID: mdl-31783104

The existing information supports the use of this material as described in this safety assessment. Isobutyl alcohol was evaluated for genotoxicity, repeated dose toxicity, reproductive toxicity, local respiratory toxicity, phototoxicity/photoallergenicity, skin sensitization, and environmental safety. Data show that isobutyl alcohol is not genotoxic. Data on isobutyl alcohol provide a calculated MOE >100 for the repeated dose toxicity and reproductive toxicity endpoints. Data from read-across material isoamyl alcohol (CAS # 123-51-3) show that there are no safety concerns for isobutyl alcohol for skin sensitization under the current declared levels of use. The phototoxicity/photoallergenicity endpoints were evaluated based on UV spectra; isobutyl alcohol is not expected to be phototoxic/photoallergenic. The local respiratory toxicity endpoint was evaluated using the TTC for a Cramer Class I material and the exposure to isobutyl alcohol is below the TTC (1.4 mg/day). The environmental endpoints were evaluated; isobutyl alcohol was found not to be PBT as per the IFRA Environmental Standards, and its risk quotients, based on its current volume of use in Europe and North America (i.e., PEC/PNEC), are <1.


Butanols/toxicity , Odorants , Animals , Butanols/chemistry , Consumer Product Safety , Drug Evaluation, Preclinical , Endpoint Determination , Humans , Mutagenicity Tests , No-Observed-Adverse-Effect Level , Risk Assessment , Salmonella typhimurium/drug effects
11.
Adv Mater ; 31(18): e1808021, 2019 May.
Article En | MEDLINE | ID: mdl-30908801

A novel conjugated oligoelectrolyte (COE) material, named S6, is designed to have a lipid-bilayer stabilizing topology afforded by an extended oligophenylenevinylene backbone. S6 intercalates biological membranes acting as a hydrophobic support for glycerophospholipid acyl chains. Indeed, Escherichia coli treated with S6 exhibits a twofold improvement in butanol tolerance, a relevant feature to achieve within the general context of modifying microorganisms used in biofuel production. Filamentous growth, a morphological stress response to butanol toxicity in E. coli, is observed in untreated cells after incubation with 0.9% butanol (v/v), but is mitigated by S6 treatment. Real-time fluorescence imaging using giant unilamellar vesicles reveals the extent to which S6 counters membrane instability. Moreover, S6 also reduces butanol-induced lipopolysaccharide release from the outer membrane to further maintain cell integrity. These findings highlight a deliberate effort in the molecular design of a chain-elongated COE to stabilize microbial membranes against environmental challenges.


Cell Wall/drug effects , Electrolytes/pharmacology , Vinyl Compounds/chemistry , Butanols/toxicity , Cell Wall/metabolism , Electrolytes/chemistry , Escherichia coli/drug effects , Escherichia coli/metabolism , Lipopolysaccharides/chemistry , Microbial Sensitivity Tests , Microscopy, Confocal
12.
J Dermatol Sci ; 91(3): 311-316, 2018 Sep.
Article En | MEDLINE | ID: mdl-30005897

BACKGROUND: Rhododendrol (4-(4-hydroxyphenyl)-2-butanol) has been used as a lightening/whitening cosmetic but was recently reported to induce leukoderma. Although rhododendrol has been shown to be transformed by tyrosinase to hydroxyl-rhododendrol, which is cytotoxic to melanocytes, its detailed mechanism of action including the involvement of reactive oxygen species is not clearly understood. OBJECTIVE: To confirm the relationship of hydroxyl radical generation to melanocyte cytotoxicity induced by rhododendrol, this study was performed. METHODS: An electron spin resonance method with a highly sensitive detection system was utilized to monitor hydroxyl radicals generated from two distinct normal human epidermal melanocyte lines with different levels of tyrosinase activity after the addition of various amounts of rhododendrol. Cytotoxicity of rhododendrol was analyzed by AlamarBlue assay under the same condition. RESULTS: Hydroxyl radicals were generated depending on the amounts of rhododendrol and/or tyrosinase. After the correlation between hydroxyl radical generation with melanocyte viability was confirmed, an inhibitor of oxidative stress, N-acetyl cysteine, was shown to dramatically diminish rhododendrol-induced generation of hydroxyl radicals and melanocyte cytotoxicity by increasing glutathione levels. In contrast, buthionine sulfoximine, which depletes glutathione, augmented both of those parameters. CONCLUSION: Suppressing oxidative stress would prevent and/or mitigate some phenol derivative-induced leukoderma by avoiding hydroxyl radical-initiated melanocyte cytotoxicity.


Butanols/toxicity , Hydroxyl Radical/metabolism , Hypopigmentation/chemically induced , Melanocytes/drug effects , Oxidative Stress/drug effects , Skin Lightening Preparations/toxicity , Skin Pigmentation/drug effects , Skin/drug effects , Antioxidants/pharmacology , Cell Line , Cell Survival/drug effects , Humans , Hypopigmentation/metabolism , Hypopigmentation/pathology , Melanocytes/metabolism , Melanocytes/pathology , Monophenol Monooxygenase/metabolism , Skin/metabolism , Skin/pathology
13.
Nat Commun ; 9(1): 2475, 2018 06 26.
Article En | MEDLINE | ID: mdl-29946130

To fully exploit the microbial genome resources, a high-throughput experimental platform is needed to associate genes with phenotypes at the genome level. We present here a novel method that enables investigation of the cellular consequences of repressing individual transcripts based on the CRISPR interference (CRISPRi) pooled screening in bacteria. We identify rules for guide RNA library design to handle the unique structure of prokaryotic genomes by tiling screening and construct an E. coli genome-scale guide RNA library (~60,000 members) accordingly. We show that CRISPRi outperforms transposon sequencing, the benchmark method in the microbial functional genomics field, when similar library sizes are used or gene length is short. This tool is also effective for mapping phenotypes to non-coding RNAs (ncRNAs), as elucidated by a comprehensive tRNA-fitness map constructed here. Our results establish CRISPRi pooled screening as a powerful tool for mapping complex prokaryotic genetic networks in a precise and high-throughput manner.


Bacteria/genetics , CRISPR-Cas Systems , Bacteria/drug effects , Bacteria/metabolism , Butanols/toxicity , Chromosome Mapping , Escherichia coli/drug effects , Escherichia coli/genetics , Escherichia coli/metabolism , Furaldehyde/toxicity , Gene Library , Gene Regulatory Networks , Genes, Essential , Genome, Bacterial , Genomics , High-Throughput Nucleotide Sequencing , INDEL Mutation , Metabolic Networks and Pathways/genetics , RNA, Bacterial/genetics , RNA, Guide, Kinetoplastida/genetics , RNA, Untranslated/genetics , Transcriptome
14.
Exp Dermatol ; 27(7): 754-762, 2018 07.
Article En | MEDLINE | ID: mdl-29630780

4-(4-Hydroxyphenyl)-2-butanol (rhododendrol, RD), a skin-whitening agent, was reported to cause skin depigmentation in some users, which is attributed to its cytotoxicity to melanocyte. It was reported that cytotoxicity to melanocyte is possibly mediated by oxidative stress in a tyrosinase activity-dependent manner. We examined the effect of UV radiation (UVR) on RD-induced melanocyte cytotoxicity as an additional aggravating factor. UVR enhanced RD-induced cytotoxicity in normal human epidermal melanocytes (NHEMs) via the induction of endoplasmic reticulum (ER) stress. Increased generation of intracellular reactive oxygen species (ROS) was detected. Pretreatment with N-acetyl cysteine (NAC), antioxidant and precursor of glutathione significantly attenuated ER stress-induced cytotoxicity in NHEMs treated with RD and UVR. Increase in cysteinyl-RD-catechol and RD-pheomelanin in NHEMs treated with RD and UVR suggested that, after UVR excitation, RD or RD metabolites are potent ROS-generating substances and that the tendency to produce RD-pheomelanin during melanogenesis amplifies ROS generation in melanocytes. Our results help to elucidate the development mechanisms of RD-induced leukoderma and provide information for innovation of safe skin-whitening compounds.


Butanols/toxicity , Melanocytes/drug effects , Skin Lightening Preparations/toxicity , Acetylcysteine/pharmacology , Antioxidants/pharmacology , Apoptosis/drug effects , Apoptosis/radiation effects , Butanols/metabolism , Caspase Inhibitors/pharmacology , Cell Survival/drug effects , Cell Survival/radiation effects , Cells, Cultured , Endoplasmic Reticulum Stress/drug effects , Endoplasmic Reticulum Stress/radiation effects , Humans , Hypopigmentation/etiology , Melanins/metabolism , Melanocytes/metabolism , Melanocytes/radiation effects , Oxidative Stress/drug effects , Oxidative Stress/radiation effects , Reactive Oxygen Species/metabolism , Skin Lightening Preparations/metabolism , Ultraviolet Rays/adverse effects
15.
Int J Mol Sci ; 19(2)2018 Feb 12.
Article En | MEDLINE | ID: mdl-29439519

RS-4-(4-hydroxyphenyl)-2-butanol (rhododendrol (RD))-a skin-whitening ingredient-was reported to induce leukoderma in some consumers. We have examined the biochemical basis of the RD-induced leukoderma by elucidating the metabolic fate of RD in the course of tyrosinase-catalyzed oxidation. We found that the oxidation of racemic RD by mushroom tyrosinase rapidly produces RD-quinone, which gives rise to secondary quinone products. Subsequently, we confirmed that human tyrosinase is able to oxidize both enantiomers of RD. We then showed that B16 cells exposed to RD produce high levels of RD-pheomelanin and protein-SH adducts of RD-quinone. Our recent studies showed that RD-eumelanin-an oxidation product of RD-exhibits a potent pro-oxidant activity that is enhanced by ultraviolet-A radiation. In this review, we summarize our biochemical findings on the tyrosinase-dependent metabolism of RD and related studies by other research groups. The results suggest two major mechanisms of cytotoxicity to melanocytes. One is the cytotoxicity of RD-quinone through binding with sulfhydryl proteins that leads to the inactivation of sulfhydryl enzymes and protein denaturation that leads to endoplasmic reticulum stress. The other mechanism is the pro-oxidant activity of RD-derived melanins that leads to oxidative stress resulting from the depletion of antioxidants and the generation of reactive oxygen radicals.


Butanols/toxicity , Hypopigmentation/chemically induced , Skin Lightening Preparations/toxicity , Animals , Butanols/pharmacokinetics , Butanols/pharmacology , Humans , Melanocytes/drug effects , Melanocytes/metabolism , Melanocytes/radiation effects , Monophenol Monooxygenase/metabolism , Reactive Oxygen Species , Skin Lightening Preparations/pharmacokinetics , Skin Lightening Preparations/pharmacology , Ultraviolet Rays/adverse effects
16.
Toxicol In Vitro ; 48: 329-341, 2018 Apr.
Article En | MEDLINE | ID: mdl-29432896

Modern vehicles equipped with Gasoline Direct Injection (GDI) engine have emerged as an important source of particulate emissions potentially harmful to human health. We collected and characterized gasoline exhaust particles (GEPs) produced by neat gasoline fuel (E0) and its blends with 15% ethanol (E15), 25% n-butanol (n-But25) and 25% isobutanol (i-But25). To study the toxic effects of organic compounds extracted from GEPs, we analyzed gene expression profiles in human lung BEAS-2B cells. Despite the lowest GEP mass, n-But25 extract contained the highest concentration of polycyclic aromatic hydrocarbons (PAHs), while i-But25 extract the lowest. Gene expression analysis identified activation of the DNA damage response and other subsequent events (cell cycle arrest, modulation of extracellular matrix, cell adhesion, inhibition of cholesterol biosynthesis) following 4 h exposure to all GEP extracts. The i-But25 extract induced the most distinctive gene expression pattern particularly after 24 h exposure. Whereas E0, E15 and n-But25 extract treatments resulted in persistent stress signaling including DNA damage response, MAPK signaling, oxidative stress, metabolism of PAHs or pro-inflammatory response, i-But25 induced changes related to the metabolism of the cellular nutrients required for cell recovery. Our results indicate that i-But25 extract possessed the weakest genotoxic potency possibly due to the low PAH content.


Air Pollutants/toxicity , Biofuels/toxicity , Gasoline/toxicity , Lung/drug effects , Organic Chemicals/toxicity , Transcription, Genetic/drug effects , Vehicle Emissions/toxicity , Air Pollutants/analysis , Biofuels/analysis , Butanols/analysis , Butanols/toxicity , Cell Line , DNA Damage , Ethanol/chemistry , Gasoline/analysis , Gene Expression Profiling , Humans , Inflammation/chemically induced , Inflammation/pathology , Lung/pathology , MAP Kinase Signaling System/drug effects , Organic Chemicals/chemistry , Oxidative Stress/drug effects , Particulate Matter/toxicity , Polycyclic Aromatic Hydrocarbons/analysis , Polycyclic Aromatic Hydrocarbons/toxicity , Vehicle Emissions/analysis
18.
Electron. j. biotechnol ; 30: 58-63, nov. 2017. ilus, tab, graf
Article En | LILACS | ID: biblio-1021458

Background: Mutation breeding is one of the most important routes to achieving high docosahexaenoic acid (DHA) productivity using Schizochytrium. However, few selection strategies have been reported that aim to generate a high DHA content in Schizochytrium lipids. Results: First, culture temperature altered the butanol tolerance of Schizochytrium limacinum B4D1. Second, S. limacinum E8 was obtained by selecting mutants with high butanol tolerance. This mutant exhibited a 17.97% lower proportion of DHA than the parent strain S. limacinum B4D1. Third, a negative selection strategy was designed in which S. limacinum F6, a mutant with poor butanol tolerance, was obtained. The proportion of DHA in S. limacinum F6 was 11.22% higher than that of parent strain S. limacinum B4D1. Finally, the performances of S. limacinum B4D1, E8 and F6 were compared. These three strains had different fatty acid profiles, but there was no statistical difference in their biomasses and lipid yields. Conclusion: It was feasible to identified the relative DHA content of S. limacinum mutants based on their butanol tolerance.


Docosahexaenoic Acids/biosynthesis , Butanols/metabolism , Stramenopiles/genetics , Stramenopiles/metabolism , Selection, Genetic , Temperature , Eicosapentaenoic Acid/metabolism , Biomass , Butanols/toxicity , Fatty Acids/metabolism , Fatty Acids/chemistry , Stramenopiles/drug effects , Fermentation , Mutation
19.
N Biotechnol ; 37(Pt B): 210-221, 2017 Jul 25.
Article En | MEDLINE | ID: mdl-28286167

Apprehensions relating to global warming, climate change, pollution, rising energy demands as well as fluctuating crude oil prices and supply are leading to a shift in global interest to find suitable alternatives to fossil fuels. This review aims to highlight the many different facets of butanol as an advanced next-generation transportation biofuel. Butanol has fuel properties almost on a par with gasoline, such as high energy content, low vapor pressure, non-hygroscopic nature, less volatility, flexible fuel blends and high octane number. The paper reviews some recent advances in acetone-butanol-ethanol fermentation with special emphasis on the primary challenges encountered in butanol fermentation, including butanol toxicity, solvent intolerance and bacteriophage contamination. The mechanisms for butanol recovery techniques have been covered along with their benefits and limitations. A comprehensive discussion of genetic and metabolic engineering of butanol-producing microorganisms is made for the prospective development of industrially-relevant strains that can overcome the technical challenges involved in efficient butanol production.


Bacteria/genetics , Bacteria/metabolism , Butanols/metabolism , Fermentation , Metabolic Engineering , Synthetic Biology , Bacteria/virology , Bacteriophages/metabolism , Butanols/chemistry , Butanols/toxicity
20.
Appl Microbiol Biotechnol ; 100(23): 10005-10018, 2016 Dec.
Article En | MEDLINE | ID: mdl-27654654

Improving yeast tolerance to 1-butanol and isobutanol is a step toward enabling high-titer production. To identify previously unknown genetic targets leading to increased tolerance, we establish a tunable RNA interference (RNAi) screening approach. Specifically, we optimized the efficiency and tunability of RNA interference library screening in yeast, ultimately enabling downregulation efficiencies from 0 to 94 %. Using this system, we identified the Hsp70 family as a key regulator of isobutanol tolerance in a single round of screening, with downregulation of these genes conferring up to 64 % increased growth in 12 g/L isobutanol. For 1-butanol, we find through two rounds of iterative screening that the combined downregulation of alcohol dehydrogenase and enolase improves growth up to 3100 % in 10 g/L 1-butanol. Collectively, this work improves the tunability of RNAi in yeast as demonstrated by the discovery of novel effectors for these complex phenotypes.


1-Butanol/toxicity , Butanols/toxicity , Drug Tolerance , Gene Knockdown Techniques , Genetic Testing/methods , RNA Interference , Saccharomyces cerevisiae/drug effects , Alcohol Dehydrogenase/genetics , Alcohol Dehydrogenase/metabolism , HSP70 Heat-Shock Proteins/genetics , HSP70 Heat-Shock Proteins/metabolism , Phosphopyruvate Hydratase/genetics , Phosphopyruvate Hydratase/metabolism , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/growth & development
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