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1.
Nature ; 629(8011): 435-442, 2024 May.
Article En | MEDLINE | ID: mdl-38658751

WRN helicase is a promising target for treatment of cancers with microsatellite instability (MSI) due to its essential role in resolving deleterious non-canonical DNA structures that accumulate in cells with faulty mismatch repair mechanisms1-5. Currently there are no approved drugs directly targeting human DNA or RNA helicases, in part owing to the challenging nature of developing potent and selective compounds to this class of proteins. Here we describe the chemoproteomics-enabled discovery of a clinical-stage, covalent allosteric inhibitor of WRN, VVD-133214. This compound selectively engages a cysteine (C727) located in a region of the helicase domain subject to interdomain movement during DNA unwinding. VVD-133214 binds WRN protein cooperatively with nucleotide and stabilizes compact conformations lacking the dynamic flexibility necessary for proper helicase function, resulting in widespread double-stranded DNA breaks, nuclear swelling and cell death in MSI-high (MSI-H), but not in microsatellite-stable, cells. The compound was well tolerated in mice and led to robust tumour regression in multiple MSI-H colorectal cancer cell lines and patient-derived xenograft models. Our work shows an allosteric approach for inhibition of WRN function that circumvents competition from an endogenous ATP cofactor in cancer cells, and designates VVD-133214 as a promising drug candidate for patients with MSI-H cancers.


Allosteric Regulation , Drug Discovery , Enzyme Inhibitors , Proteomics , Werner Syndrome Helicase , Animals , Female , Humans , Male , Mice , Allosteric Regulation/drug effects , Cell Line, Tumor , Colorectal Neoplasms/drug therapy , Colorectal Neoplasms/enzymology , Colorectal Neoplasms/pathology , Cysteine/drug effects , Cysteine/metabolism , DNA Breaks, Double-Stranded/drug effects , Drug Discovery/methods , Enzyme Inhibitors/pharmacology , Enzyme Inhibitors/chemistry , Microsatellite Instability , Models, Molecular , Werner Syndrome Helicase/antagonists & inhibitors , Werner Syndrome Helicase/chemistry , Werner Syndrome Helicase/metabolism , Xenograft Model Antitumor Assays , Cell Death/drug effects , Adenosine Triphosphate/metabolism
2.
JCI Insight ; 6(19)2021 10 08.
Article En | MEDLINE | ID: mdl-34428184

IgA nephropathy is caused by deposition of circulatory IgA1 in the kidney. Hypogalactosylated IgA1 has the propensity to form poly-IgA aggregates that are prone to deposition. Herein, we purified poly-IgA from the plasma of patients with IgA nephropathy and showed that the complex is susceptible to reducing conditions, suggesting intermolecular disulfide connections between IgA units. We sought to find the cysteine residue(s) that form intermolecular disulfide. Naturally assembled dimeric IgA, also known as secretory IgA, involves a J chain subunit connected with 2 IgA1 molecules via their penultimate cysteine-471 residue on a "tailpiece" segment of IgA heavy chain. It is plausible that, with the absence of J chain, the cysteine residue of mono-IgA1 might aberrantly form a disulfide bond in poly-IgA formation. Mutagenesis confirmed that cysteine-471 is capable of promoting IgA aggregation. These discoveries prompted us to test thiol-based drugs for stabilizing cysteine. Specifically, the cystine-reducing drug cysteamine used for treatment of cystinosis showed a remarkable potency in preventing self-aggregation of IgA. When administrated to rat and mouse models of IgA nephropathy, cysteamine significantly reduced glomerular IgA deposition. Collectively, our results reveal a potentially novel molecular mechanism for aberrant formation of IgA aggregates, to which the repurposed cystinosis drug cysteamine was efficacious in preventing renal IgA deposition.


Cysteine/metabolism , Glomerulonephritis, IGA/metabolism , Immunoglobulin A/metabolism , Kidney Glomerulus/metabolism , Protein Aggregation, Pathological/metabolism , Animals , Cysteamine/pharmacology , Cysteine/drug effects , Cystine Depleting Agents/pharmacology , Disease Models, Animal , Humans , Immunoglobulin A/drug effects , Immunoglobulin J-Chains/metabolism , Kidney Glomerulus/drug effects , Mice , Rats
3.
Mol Pharmacol ; 100(3): 283-294, 2021 09.
Article En | MEDLINE | ID: mdl-34266924

Human SETD2 is the unique histone methyltransferase that generates H3K36 trimethylation (H3K36me3), an epigenetic mark that plays a key role in normal hematopoiesis. Interestingly, recurrent inactivating mutations of SETD2 and aberrant H3K36me3 are increasingly reported to be involved in hematopoietic malignancies. Benzene (BZ) is a ubiquitous environmental pollutant and carcinogen that causes leukemia. The leukemogenic properties of BZ depend on its biotransformation in the bone marrow into oxidative metabolites, in particular 1,4-benzoquinone (BQ). This hematotoxic metabolite can form DNA and protein adducts that result in the damage and the alteration of cellular processes. Recent studies suggest that BZ-dependent leukemogenesis could depend on epigenetic perturbations, notably aberrant histone methylation. We investigated whether H3K36 trimethylation by SETD2 could be impacted by BZ and its hematotoxic metabolites. Herein, we show that BQ, the major leukemogenic metabolite of BZ, inhibits irreversibly the human histone methyltransferase SETD2, resulting in decreased H3K36me3. Our mechanistic studies further indicate that the BQ-dependent inactivation of SETD2 is due to covalent binding of BQ to reactive Zn-finger cysteines within the catalytic domain of the enzyme. The formation of these quinoprotein adducts results in loss of enzyme activity and protein crosslinks/oligomers. Experiments conducted in hematopoietic cells confirm that exposure to BQ results in the formation of SETD2 crosslinks/oligomers and concomitant loss of H3K36me3 in cells. Taken together, our data indicate that BQ, a major hematotoxic metabolite of BZ, could contribute to BZ-dependent leukemogenesis by perturbing the functions of SETD2, a histone lysine methyltransferase of hematopoietic relevance. SIGNIFICANCE STATEMENT: Benzoquinone is a major leukemogenic metabolite of benzene. Dysregulation of histone methyltransferase is involved in hematopoietic malignancies. This study found that benzoquinone irreversibly impairs SET domain containing 2, a histone H3K36 methyltransferase that plays a key role in hematopoiesis. Benzoquinone forms covalent adducts on Zn-finger cysteines within the catalytic site, leading to loss of activity, protein crosslinks/oligomers, and concomitant decrease of H3K36me3 histone mark. These data provide evidence that a leukemogenic metabolite of benzene can impair a key epigenetic enzyme.


Benzene/metabolism , Benzene/toxicity , Benzoquinones/toxicity , Histone-Lysine N-Methyltransferase/metabolism , Histones/metabolism , Benzene/chemistry , Benzoquinones/chemistry , Cell Line , Cysteine/chemistry , Cysteine/drug effects , Histone-Lysine N-Methyltransferase/antagonists & inhibitors , Histone-Lysine N-Methyltransferase/genetics , Histones/chemistry , Humans , Leukemia/chemically induced , Leukemia/genetics , Leukemia/metabolism , Methylation , Primary Cell Culture , Zinc Fingers/drug effects
4.
J Med Chem ; 64(3): 1558-1569, 2021 02 11.
Article En | MEDLINE | ID: mdl-33471528

Potent inhibitors of ALK are highly desired because of the occurrence of drug resistance. We herein firstly report the development of a rationally designed inhibitor, Con B-1, which can covalently bind to Cys1259, a cysteine located outside the ALK active site by linking a warhead with Ceritinib through a 2,2'-Oxybis(ethylamine) linker. The in vitro and in vivo assays showed ConB-1 is a potent selective ALKi with low toxicity to normal cells. In addition, the molecule showed significant improvement of anticancer activities and potential antidrug resistant activity compared with Ceritinib, demonstrating the covalent inhibitor of ALK can be a promising drug candidate for the treatment of NSCLC. This work may provide a novel perspective on the design of covalent inhibitors.


Anaplastic Lymphoma Kinase/drug effects , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/pharmacology , Cysteine/drug effects , Animals , Catalytic Domain/drug effects , Cell Line, Tumor , Dose-Response Relationship, Drug , Drug Design , Drug Resistance, Neoplasm , Female , Humans , Male , Mice , Mice, Inbred BALB C , Models, Molecular , Pyrimidines/chemistry , Pyrimidines/pharmacology , Rats , Rats, Sprague-Dawley , Structure-Activity Relationship , Sulfones/chemistry , Sulfones/pharmacology , Xenograft Model Antitumor Assays
5.
Cell Host Microbe ; 27(4): 601-613.e7, 2020 04 08.
Article En | MEDLINE | ID: mdl-32272078

Plants deploy a variety of secondary metabolites to fend off pathogen attack. Although defense compounds are generally considered toxic to microbes, the exact mechanisms are often unknown. Here, we show that the Arabidopsis defense compound sulforaphane (SFN) functions primarily by inhibiting Pseudomonas syringae type III secretion system (TTSS) genes, which are essential for pathogenesis. Plants lacking the aliphatic glucosinolate pathway, which do not accumulate SFN, were unable to attenuate TTSS gene expression and exhibited increased susceptibility to P. syringae strains that cannot detoxify SFN. Chemoproteomics analyses showed that SFN covalently modified the cysteine at position 209 of HrpS, a key transcription factor controlling TTSS gene expression. Site-directed mutagenesis and functional analyses further confirmed that Cys209 was responsible for bacterial sensitivity to SFN in vitro and sensitivity to plant defenses conferred by the aliphatic glucosinolate pathway. Collectively, these results illustrate a previously unknown mechanism by which plants disarm a pathogenic bacterium.


Arabidopsis/metabolism , Isothiocyanates/pharmacology , Pseudomonas syringae/drug effects , Type III Secretion Systems/drug effects , Bacterial Proteins/drug effects , Cysteine/drug effects , Cysteine/metabolism , Disease Resistance , Gene Expression Regulation, Bacterial , Isothiocyanates/metabolism , Plant Diseases/microbiology , Pseudomonas syringae/metabolism , Secondary Metabolism , Sulfoxides , Transcription Factors/drug effects , Type III Secretion Systems/genetics
6.
Anal Chem ; 92(9): 6598-6603, 2020 05 05.
Article En | MEDLINE | ID: mdl-32241109

Even through many physiological pathways of resveratrol have been established since its association with the "French paradox" in 1992, its exact pathological roles are still ambiguous and disputable. To understand how resveratrol exerts its effects would not only enlighten the pathogenesis study of related diseases, but also promote the development of more potent molecules. Focusing on the reported cellular directly and indirectly ROS scavenging processes of resveratrol, we evaluated the activation effect of the inherent antioxidation thiols system in subcellular level by two cysteine (Cys) specific fluorescent probes mitochondria targetable Mito-1 and lysosomes targetable Ly-1. We found that 50 µM resveratrol treatment could induce distinct Cys up-regulation in both mitochondria and lysosomes which might be a general biological phenomenon in various cell lines for the first time.


Antioxidants/analysis , Cysteine/metabolism , Fluorescent Dyes/chemistry , Optical Imaging , Resveratrol/analysis , Antioxidants/pharmacology , Cells, Cultured , Cysteine/drug effects , Humans , Lysosomes/drug effects , Lysosomes/metabolism , Mitochondria/drug effects , Mitochondria/metabolism , Molecular Structure , Resveratrol/pharmacology
7.
Nat Commun ; 10(1): 5091, 2019 11 08.
Article En | MEDLINE | ID: mdl-31704924

Activated macrophages switch from oxidative phosphorylation to aerobic glycolysis, similar to the Warburg effect, presenting a potential therapeutic target in inflammatory disease. The endogenous metabolite itaconate has been reported to regulate macrophage function, but its precise mechanism is not clear. Here, we show that 4-octyl itaconate (4-OI, a cell-permeable itaconate derivative) directly alkylates cysteine residue 22 on the glycolytic enzyme GAPDH and decreases its enzyme activity. Glycolytic flux analysis by U13C glucose tracing provides evidence that 4-OI blocks glycolytic flux at GAPDH. 4-OI thereby downregulates aerobic glycolysis in activated macrophages, which is required for its anti-inflammatory effects. The anti-inflammatory effects of 4-OI are replicated by heptelidic acid, 2-DG and reversed by increasing wild-type (but not C22A mutant) GAPDH expression. 4-OI protects against lipopolysaccharide-induced lethality in vivo and inhibits cytokine release. These findings show that 4-OI has anti-inflammatory effects by targeting GAPDH to decrease aerobic glycolysis in macrophages.


Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)/drug effects , Glycolysis/drug effects , Macrophages/drug effects , Succinates/pharmacology , Alkylation , Animals , Antimetabolites/pharmacology , Cysteine/drug effects , Cysteine/genetics , Cysteine/metabolism , Deoxyglucose/pharmacology , Down-Regulation , Endotoxemia/immunology , Glucose/metabolism , Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)/antagonists & inhibitors , Glyceraldehyde-3-Phosphate Dehydrogenase (Phosphorylating)/metabolism , Inflammation/immunology , Interleukin-1beta/drug effects , Interleukin-1beta/immunology , Lipopolysaccharides/pharmacology , Macrophage Activation/immunology , Macrophages/immunology , Macrophages/metabolism , Mice , Nitric Oxide Synthase Type II/drug effects , Nitric Oxide Synthase Type II/immunology , Oxidative Phosphorylation/drug effects , RAW 264.7 Cells , Sesquiterpenes/pharmacology
8.
Mol Cell Proteomics ; 18(3): 504-519, 2019 03.
Article En | MEDLINE | ID: mdl-30587509

The fumarate ester dimethyl fumarate (DMF) has been introduced recently as a treatment for relapsing remitting multiple sclerosis (RRMS), a chronic inflammatory condition that results in neuronal demyelination and axonal loss. DMF is known to act by depleting intracellular glutathione and modifying thiols on Keap1 protein, resulting in the stabilization of the transcription factor Nrf2, which in turn induces the expression of antioxidant response element genes. We have previously shown that DMF reacts with a wide range of protein thiols, suggesting that the complete mechanisms of action of DMF are unknown. Here, we investigated other intracellular thiol residues that may also be irreversibly modified by DMF in neurons and astrocytes. Using mass spectrometry, we identified 24 novel proteins that were modified by DMF in neurons and astrocytes, including cofilin-1, tubulin and collapsin response mediator protein 2 (CRMP2). Using an in vitro functional assay, we demonstrated that DMF-modified cofilin-1 loses its activity and generates less monomeric actin, potentially inhibiting its cytoskeletal remodeling activity, which could be beneficial in the modulation of myelination during RRMS. DMF modification of tubulin did not significantly impact axonal lysosomal trafficking. We found that the oxygen consumption rate of N1E-115 neurons and the levels of proteins related to mitochondrial energy production were only slightly affected by the highest doses of DMF, confirming that DMF treatment does not impair cellular respiratory function. In summary, our work provides new insights into the mechanisms supporting the neuroprotective and remyelination benefits associated with DMF treatment in addition to the antioxidant response by Nrf2.


Astrocytes/metabolism , Cysteine/drug effects , Dimethyl Fumarate/pharmacology , NF-E2-Related Factor 2/metabolism , Neurons/metabolism , 3T3-L1 Cells , Animals , Astrocytes/cytology , Astrocytes/drug effects , Cells, Cultured , Cofilin 1/chemistry , Cofilin 1/metabolism , Intercellular Signaling Peptides and Proteins , Mass Spectrometry , Mice , Nerve Tissue Proteins/chemistry , Nerve Tissue Proteins/metabolism , Neurons/cytology , Neurons/drug effects , Rats , Tubulin/chemistry , Tubulin/metabolism
9.
Mol Pharm ; 15(11): 5244-5251, 2018 11 05.
Article En | MEDLINE | ID: mdl-30265541

Aseptic loosening of artificial joints mainly accounts for the failure of arthroplasty. We previously reported that ursolic acid (UA) inhibited osteolysis caused by titanium (Ti) wear particles via suppression of NF-kB signaling. In the present study, that the suppressive effect of UA on Ti-particle-induced inflammation and osteoclastogenesis targets on IKKß cys-179 was demonstrated. A retrovirus packaged IKKßC179A plasmid with a Cys-179 mutation replaced by Ala was constructed. qRT-PCR, immunoblot, and immunofluorescence were used to evaluate the gene expressions. Secreted inflammatory cytokines were detected by ELISA. Formation and function of osteoclastogenesis were evaluated by TRAP stain and hydroxylapatite resorption assays. As a result, a mutation of IKKßC179A rescued the therapeutic effect of UA on Ti-particle-induced inflammation, including morphological transforms, upregulation of iNOS and COX-2, increased secretions of TNF-α, IL-1ß, and IL-6, and decreased secretion of IL-10. Meanwhile, inhibition of osteoclastogenesis and hydroxylapatite resorptions were restored by transfection of IKKßC179A. Phosphorylations of p65 and the IKKα/ß complex and translocation of p65 into the nucleus were suppressed by UA but rescued by a mutation of IKKßC179A. Conclusively, UA inhibits Ti-wear-particle-induced inflammation, osteoclastogenesis, and hydroxylapatite resorption via modifying cysteine 179 of IKKß.


Bone Resorption/prevention & control , I-kappa B Kinase/drug effects , Inflammation/prevention & control , Titanium/adverse effects , Triterpenes/pharmacology , Animals , Bone Resorption/chemically induced , Bone Resorption/pathology , Cysteine/chemistry , Cysteine/drug effects , Durapatite/metabolism , I-kappa B Kinase/chemistry , I-kappa B Kinase/genetics , Inflammation/chemically induced , Inflammation/pathology , Joint Prosthesis/adverse effects , Mice , Mice, Inbred C57BL , Monocytes , Osteoclasts/drug effects , Osteoclasts/metabolism , Primary Cell Culture , Prosthesis Failure/drug effects , RAW 264.7 Cells , Triterpenes/administration & dosage , Ursolic Acid
10.
Int J Parasitol Drugs Drug Resist ; 7(3): 425-432, 2017 12.
Article En | MEDLINE | ID: mdl-29197728

Giardiasis, the infestation of the intestinal tract by Giardia lamblia, is one of the most prevalent parasitosis worldwide. Even though effective therapies exist for it, the problems associated with its use indicate that new therapeutic options are needed. It has been shown that disulfiram eradicates trophozoites in vitro and is effective in vivo in a murine model of giardiasis; disulfiram inactivation of carbamate kinase by chemical modification of an active site cysteine has been proposed as the drug mechanism of action. The triosephosphate isomerase from G. lamblia (GlTIM) has been proposed as a plausible target for the development of novel antigiardial pharmacotherapies, and chemical modification of its cysteine 222 (C222) by thiol-reactive compounds is evidenced to inactivate the enzyme. Since disulfiram is a cysteine modifying agent and GlTIM can be inactivated by modification of C222, in this work we tested the effect of disulfiram over the recombinant and trophozoite-endogenous GlTIM. The results show that disulfiram inactivates GlTIM by modification of its C222. The inactivation is species-specific since disulfiram does not affect the human homologue enzyme. Disulfiram inactivation induces only minor conformational changes in the enzyme, but substantially decreases its stability. Recombinant and endogenous GlTIM inactivates similarly, indicating that the recombinant protein resembles the natural enzyme. Disulfiram induces loss of trophozoites viability and inactivation of intracellular GlTIM at similar rates, suggesting that both processes may be related. It is plausible that the giardicidal effect of disulfiram involves the inactivation of more than a single enzyme, thus increasing its potential for repurposing it as an antigiardial drug.


Antiparasitic Agents/pharmacology , Cysteine/drug effects , Disulfiram/pharmacology , Giardia lamblia/drug effects , Triose-Phosphate Isomerase/drug effects , Triose-Phosphate Isomerase/genetics , Catalytic Domain , Cysteine/chemistry , Cysteine/genetics , Drug Repositioning/methods , Giardia lamblia/enzymology , Giardiasis/drug therapy , Giardiasis/parasitology , Kinetics , Models, Molecular , Recombinant Proteins/drug effects , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Triose-Phosphate Isomerase/chemistry , Triose-Phosphate Isomerase/metabolism , Trophozoites/drug effects , Trophozoites/physiology
11.
Mem. Inst. Oswaldo Cruz ; 112(1): 31-43, Jan. 2017. graf
Article En | LILACS | ID: biblio-841752

A pleiotropic response to the calpain inhibitor MDL28170 was detected in the tomato parasite Phytomonas serpens. Ultrastructural studies revealed that MDL28170 caused mitochondrial swelling, shortening of flagellum and disruption of trans Golgi network. This effect was correlated to the inhibition in processing of cruzipain-like molecules, which presented an increase in expression paralleled by decreased proteolytic activity. Concomitantly, a calcium-dependent cysteine peptidase was detected in the parasite extract, the activity of which was repressed by pre-incubation of parasites with MDL28170. Flow cytometry and Western blotting analyses revealed the differential expression of calpain-like proteins (CALPs) in response to the pre-incubation of parasites with the MDL28170, and confocal fluorescence microscopy confirmed their surface location. The interaction of promastigotes with explanted salivary glands of the insect Oncopeltus fasciatus was reduced when parasites were pre-treated with MDL28170, which was correlated to reduced levels of surface cruzipain-like and gp63-like molecules. Treatment of parasites with anti-Drosophila melanogaster (Dm) calpain antibody also decreased the adhesion process. Additionally, parasites recovered from the interaction process presented higher levels of surface cruzipain-like and gp63-like molecules, with similar levels of CALPs cross-reactive to anti-Dm-calpain antibody. The results confirm the importance of exploring the use of calpain inhibitors in studying parasites’ physiology.


Animals , Salivary Glands/parasitology , Heteroptera/parasitology , Cysteine/drug effects , Cysteine/metabolism , Euglenozoa/drug effects , Euglenozoa/enzymology , Euglenozoa/ultrastructure , Host-Parasite Interactions/physiology , Microscopy, Electron , Blotting, Western , Flow Cytometry , Lethal Dose 50
12.
Mem Inst Oswaldo Cruz ; 112(1): 31-43, 2017 Jan 01.
Article En | MEDLINE | ID: mdl-27925020

A pleiotropic response to the calpain inhibitor MDL28170 was detected in the tomato parasite Phytomonas serpens. Ultrastructural studies revealed that MDL28170 caused mitochondrial swelling, shortening of flagellum and disruption of trans Golgi network. This effect was correlated to the inhibition in processing of cruzipain-like molecules, which presented an increase in expression paralleled by decreased proteolytic activity. Concomitantly, a calcium-dependent cysteine peptidase was detected in the parasite extract, the activity of which was repressed by pre-incubation of parasites with MDL28170. Flow cytometry and Western blotting analyses revealed the differential expression of calpain-like proteins (CALPs) in response to the pre-incubation of parasites with the MDL28170, and confocal fluorescence microscopy confirmed their surface location. The interaction of promastigotes with explanted salivary glands of the insect Oncopeltus fasciatus was reduced when parasites were pre-treated with MDL28170, which was correlated to reduced levels of surface cruzipain-like and gp63-like molecules. Treatment of parasites with anti-Drosophila melanogaster (Dm) calpain antibody also decreased the adhesion process. Additionally, parasites recovered from the interaction process presented higher levels of surface cruzipain-like and gp63-like molecules, with similar levels of CALPs cross-reactive to anti-Dm-calpain antibody. The results confirm the importance of exploring the use of calpain inhibitors in studying parasites' physiology.


Cysteine/drug effects , Euglenozoa/drug effects , Heteroptera/parasitology , Host-Parasite Interactions/physiology , Animals , Blotting, Western , Cysteine/metabolism , Dipeptides , Euglenozoa/enzymology , Euglenozoa/ultrastructure , Flow Cytometry , Lethal Dose 50 , Microscopy, Electron , Salivary Glands/parasitology
13.
Nat Med ; 23(1): 120-127, 2017 01.
Article En | MEDLINE | ID: mdl-27869804

Cancer cells experience higher oxidative stress from reactive oxygen species (ROS) than do non-malignant cells because of genetic alterations and abnormal growth; as a result, maintenance of the antioxidant glutathione (GSH) is essential for their survival and proliferation. Under conditions of elevated ROS, endogenous L-cysteine (L-Cys) production is insufficient for GSH synthesis. This necessitates uptake of L-Cys that is predominantly in its disulfide form, L-cystine (CSSC), via the xCT(-) transporter. We show that administration of an engineered and pharmacologically optimized human cyst(e)inase enzyme mediates sustained depletion of the extracellular L-Cys and CSSC pool in mice and non-human primates. Treatment with this enzyme selectively causes cell cycle arrest and death in cancer cells due to depletion of intracellular GSH and ensuing elevated ROS; yet this treatment results in no apparent toxicities in mice even after months of continuous treatment. Cyst(e)inase suppressed the growth of prostate carcinoma allografts, reduced tumor growth in both prostate and breast cancer xenografts and doubled the median survival time of TCL1-Tg:p53-/- mice, which develop disease resembling human chronic lymphocytic leukemia. It was observed that enzyme-mediated depletion of the serum L-Cys and CSSC pool suppresses the growth of multiple tumors, yet is very well tolerated for prolonged periods, suggesting that cyst(e)inase represents a safe and effective therapeutic modality for inactivating antioxidant cellular responses in a wide range of malignancies.


Breast Neoplasms/metabolism , Cystathionine gamma-Lyase/pharmacology , Cysteine/drug effects , Cystine/drug effects , Leukemia, Lymphocytic, Chronic, B-Cell/metabolism , Polyethylene Glycols/pharmacology , Prostatic Neoplasms/metabolism , Reactive Oxygen Species/metabolism , Animals , Blotting, Western , Cell Line, Tumor , Cysteine/metabolism , Cystine/metabolism , Female , Glutathione/metabolism , Humans , Leukemia, Lymphocytic, Chronic, B-Cell/genetics , Macaca fascicularis , Male , Mice , Mice, Knockout , Mice, Transgenic , Neoplasm Transplantation , Oxidative Stress , Tumor Suppressor Protein p53/genetics
14.
Biochem Pharmacol ; 125: 55-74, 2017 Feb 01.
Article En | MEDLINE | ID: mdl-27823964

Recently, we published that nitro-fatty acids (NFA) are potent electrophilic molecules which inhibit 5-lipoxygenase (5-LO) by interacting catalytically with cysteine residues next to a substrate entry channel. The electrophilicity is derived from an intramolecular Michael acceptor moiety consisting of an electron-withdrawing group in close proximity to a double bond. The potential of the Michael acceptor moiety to interact with functionally relevant cysteines of proteins potentially renders them effective and sustained enzyme activity modulators. We screened a large library of naturally derived and synthetic electrophilic compounds to investigate whether other types of Michael acceptor containing drugs suppress 5-LO enzyme activity. The activity was measured by assessing the effect on the 5-LO product formation of intact human polymorphonuclear leukocytes. We demonstrated that a number of structurally different compounds were suppressive in the activity assays and showed that Michael acceptors of the quinone and nitro-alkene group produced the strongest inhibition of 5-LO product formation. Reactivity with the catalytically relevant cysteines 416 and 418 was confirmed using mutated recombinant 5-LO and mass spectrometric analysis (MALDI-MS). In the present study, we show for the first time that a number of well-recognized naturally occurring or synthetic anti-inflammatory compounds carrying a Michael acceptor, such as thymoquinone (TQ), the paracetamol metabolite NAPQI, the 5-LO inhibitor AA-861, and bardoxolone methyl (also known as RTA 402 or CDDO-methyl ester) are direct covalent 5-LO enzyme inhibitors that target the catalytically relevant cysteines 416 and 418.


Cysteine/drug effects , Lipoxygenase Inhibitors/pharmacology , Humans , Inhibitory Concentration 50 , Recombinant Proteins/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
15.
Nat Commun ; 7: 11031, 2016 Mar 16.
Article En | MEDLINE | ID: mdl-26980593

Building a sophisticated protein nano-assembly requires a method for linking protein components in a predictable and stable structure. Most of the cross linkers available have flexible spacers. Because of this, the linked hybrids have significant structural flexibility and the relative structure between their two components is largely unpredictable. Here we describe a method of connecting two proteins via a 'fusion α helix' formed by joining two pre-existing helices into a single extended helix. Because simple ligation of two helices does not guarantee the formation of a continuous helix, we used EY-CBS, a synthetic cross linker that has been shown to react selectively with cysteines in α-helices, to stabilize the connecting helix. Formation and stabilization of the fusion helix was confirmed by determining the crystal structures of the fusion proteins with and without bound EY-CBS. Our method should be widely applicable for linking protein building blocks to generate predictable structures.


Ankyrins/drug effects , Cross-Linking Reagents/pharmacology , Staphylococcal Protein A/drug effects , Ankyrins/chemistry , Crystallization , Crystallography, X-Ray , Cysteine/chemistry , Cysteine/drug effects , Peptide Fragments/chemistry , Peptide Fragments/drug effects , Protein Structure, Secondary/drug effects , Staphylococcal Protein A/chemistry
16.
Nat Commun ; 6: 10216, 2015 Dec 16.
Article En | MEDLINE | ID: mdl-26671725

Neurofibrillary tangles, composed of hyperphosphorylated tau fibrils, are a pathological hallmark of Alzheimer's disease; the neurofibrillary tangle load correlates strongly with clinical progression of the disease. A growing body of evidence indicates that tau oligomer formation precedes the appearance of neurofibrillary tangles and contributes to neuronal loss. Here we show that tau oligomer formation can be inhibited by compounds whose chemical backbone includes 1,2-dihydroxybenzene. Specifically, we demonstrate that 1,2-dihydroxybenzene-containing compounds bind to and cap cysteine residues of tau and prevent its aggregation by hindering interactions between tau molecules. Further, we show that orally administered DL-isoproterenol, an adrenergic receptor agonist whose skeleton includes 1,2-dihydroxybenzene and which penetrates the brain, reduces the levels of detergent-insoluble tau, neuronal loss and reverses neurofibrillary tangle-associated brain dysfunction. Thus, compounds that target the cysteine residues of tau may prove useful in halting the progression of Alzheimer's disease and other tauopathies.


Adrenergic beta-Agonists/pharmacology , Alzheimer Disease/metabolism , Catechols/pharmacology , Cysteine/drug effects , Isoproterenol/pharmacology , Neurofibrillary Tangles/drug effects , Neurons/drug effects , tau Proteins/drug effects , Adrenergic beta-Agonists/chemistry , Animals , Behavior, Animal/drug effects , Blotting, Western , Brain/drug effects , Brain/metabolism , Catechols/chemistry , Catechols/metabolism , Cell Line, Tumor , Cysteine/metabolism , Disease Models, Animal , Disease Progression , Drug Evaluation, Preclinical , Isoproterenol/chemistry , Mice , Mice, Transgenic , Neurofibrillary Tangles/metabolism , Neurons/pathology , Polymerization , tau Proteins/genetics , tau Proteins/metabolism
17.
Angew Chem Int Ed Engl ; 54(20): 6057-61, 2015 May 11.
Article En | MEDLINE | ID: mdl-25772490

The regulation of transcriptional programs by epigenetic readers (bromodomains) has been linked to the development of several pathologies. Notably, it has been implicated in the regulation of cellular growth and evasion of apoptosis, in cancer as well as in inflammation. The discovery of small-molecule probes to dissect the role of bromodomains is thus important. We demonstrate that specific cysteine residues conserved across the bromodomains can be harnessed for covalent trapping. We report the discovery of two small molecules that form a covalent bond with cysteine residues conserved across the bromodomain family, analyze the subset of bromodomains that can be addressed through covalent binding, and show proteomic analyses enabled by the enrichment of bromodomains from native lysates.


DNA/chemistry , Epigenesis, Genetic/drug effects , Molecular Probes/chemistry , Molecular Probes/pharmacology , Protein Structure, Tertiary/drug effects , Small Molecule Libraries/chemistry , Small Molecule Libraries/pharmacology , Binding Sites/drug effects , Cysteine/chemistry , Cysteine/drug effects , Ethacrynic Acid/chemistry , Ethacrynic Acid/pharmacology , Humans , Models, Molecular , Molecular Structure , Proteomics
18.
J Clin Invest ; 123(12): 5361-70, 2013 Dec.
Article En | MEDLINE | ID: mdl-24231355

Nuclear factor-κB (NF-κB) regulates cellular responses to inflammation and aging, and alterations in NF-κB signaling underlie the pathogenesis of multiple human diseases. Effective clinical therapeutics targeting this pathway remain unavailable. In primary human keratinocytes, we found that hypochlorite (HOCl) reversibly inhibited the expression of CCL2 and SOD2, two NF-κB-dependent genes. In cultured cells, HOCl inhibited the activity of inhibitor of NF-κB kinase (IKK), a key regulator of NF-κB activation, by oxidizing cysteine residues Cys114 and Cys115. In NF-κB reporter mice, topical HOCl reduced LPS-induced NF-κB signaling in skin. We further evaluated topical HOCl use in two mouse models of NF-κB-driven epidermal disease. For mice with acute radiation dermatitis, topical HOCl inhibited the expression of NF-κB-dependent genes, decreased disease severity, and prevented skin ulceration. In aged mice, topical HOCl attenuated age-dependent production of p16INK4a and expression of the DNA repair gene Rad50. Additionally, skin of aged HOCl-treated mice acquired enhanced epidermal thickness and proliferation, comparable to skin in juvenile animals. These data suggest that topical HOCl reduces NF-κB-mediated epidermal pathology in radiation dermatitis and skin aging through IKK modulation and motivate the exploration of HOCl use for clinical aims.


Gene Expression Regulation/drug effects , Hypochlorous Acid/therapeutic use , NF-kappa B/physiology , Oxidants/therapeutic use , Skin Aging/drug effects , Skin Diseases/drug therapy , ATP-Binding Cassette Transporters/biosynthesis , ATP-Binding Cassette Transporters/genetics , Acid Anhydride Hydrolases , Administration, Cutaneous , Amino Acid Substitution , Animals , Cells, Cultured , Chemokine CCL2/biosynthesis , Chemokine CCL2/genetics , Cyclin-Dependent Kinase Inhibitor p16/biosynthesis , Cyclin-Dependent Kinase Inhibitor p16/genetics , Cysteine/drug effects , DNA Repair/drug effects , DNA-Binding Proteins , Drug Evaluation, Preclinical , Female , Genes, Reporter , Humans , Hypochlorous Acid/administration & dosage , I-kappa B Kinase/antagonists & inhibitors , Keratinocytes/drug effects , Keratinocytes/metabolism , Mice , Mice, Inbred C57BL , Mice, Transgenic , NF-kappa B/genetics , Oxidants/administration & dosage , Oxidation-Reduction , Radiodermatitis/drug therapy , Radiodermatitis/pathology , Skin Diseases/genetics , Skin Diseases/metabolism , Skin Diseases/pathology , Skin Ulcer/prevention & control , Superoxide Dismutase/biosynthesis , Superoxide Dismutase/genetics , Transcription, Genetic/drug effects , Tumor Necrosis Factor-alpha/antagonists & inhibitors , Tumor Necrosis Factor-alpha/pharmacology
19.
Cerebellum ; 12(5): 686-91, 2013 Oct.
Article En | MEDLINE | ID: mdl-23575947

Posterior fossa syndrome (PFS) due to vascular etiology is rare in children and adults. To the best of our knowledge, PFS due to cerebellar stroke has only been reported in patients who also underwent surgical treatment of the underlying vascular cause. We report longitudinal clinical, neurocognitive and neuroradiological findings in a 71-year-old right-handed patient who developed PFS following a right cerebellar haemorrhage that was not surgically evacuated. During follow-up, functional neuroimaging was conducted by means of quantified Tc-99m-ECD SPECT studies. After a 10-day period of akinetic mutism, the clinical picture developed into cerebellar cognitive affective syndrome (CCAS) with reversion to a previously learnt accent, consistent with neurogenic foreign accent syndrome (FAS). No psychometric evidence for dementia was found. Quantified Tc-99m-ECD SPECT studies consistently disclosed perfusional deficits in the anatomoclinically suspected but structurally intact bilateral prefrontal brain regions. Since no surgical treatment of the cerebellar haematoma was performed, this case report is presumably the first description of pure, "non-surgical vascular PFS". In addition, reversion to a previously learnt accent which represents a subtype of FAS has never been reported after cerebellar damage. The combination of this unique constellation of poststroke neurobehavioural changes reflected on SPECT shows that the cerebellum is crucially implicated in the modulation of neurocognitive and affective processes. A decrease of excitatory impulses from the lesioned cerebellum to the structurally intact supratentorial network subserving cognitive, behavioural and affective processes constitutes the likely pathophysiological mechanism underlying PFS and CCAS in this patient.


Cerebellar Diseases/etiology , Cerebellar Diseases/pathology , Cranial Fossa, Posterior/pathology , Mutism/etiology , Stroke/complications , Aged , Cerebellar Diseases/diagnosis , Cranial Fossa, Posterior/surgery , Cysteine/analogs & derivatives , Cysteine/drug effects , Follow-Up Studies , Humans , Male , Neuropsychological Tests , Organotechnetium Compounds , Stroke/diagnosis , Stroke/physiopathology , Tomography, Emission-Computed, Single-Photon/methods
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