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1.
Cancer Res ; 80(8): 1735-1747, 2020 04 15.
Artículo en Inglés | MEDLINE | ID: mdl-32161100

RESUMEN

Checkpoint kinase 1 (CHK1) is a key mediator of the DNA damage response that regulates cell-cycle progression, DNA damage repair, and DNA replication. Small-molecule CHK1 inhibitors sensitize cancer cells to genotoxic agents and have shown single-agent preclinical activity in cancers with high levels of replication stress. However, the underlying genetic determinants of CHK1 inhibitor sensitivity remain unclear. We used the developmental clinical drug SRA737 in an unbiased large-scale siRNA screen to identify novel mediators of CHK1 inhibitor sensitivity and uncover potential combination therapies and biomarkers for patient selection. We identified subunits of the B-family of DNA polymerases (POLA1, POLE, and POLE2) whose silencing sensitized the human A549 non-small cell lung cancer (NSCLC) and SW620 colorectal cancer cell lines to SRA737. B-family polymerases were validated using multiple siRNAs in a panel of NSCLC and colorectal cancer cell lines. Replication stress, DNA damage, and apoptosis were increased in human cancer cells following depletion of the B-family DNA polymerases combined with SRA737 treatment. Moreover, pharmacologic blockade of B-family DNA polymerases using aphidicolin or CD437 combined with CHK1 inhibitors led to synergistic inhibition of cancer cell proliferation. Furthermore, low levels of POLA1, POLE, and POLE2 protein expression in NSCLC and colorectal cancer cells correlated with single-agent CHK1 inhibitor sensitivity and may constitute biomarkers of this phenotype. These findings provide a potential basis for combining CHK1 and B-family polymerase inhibitors in cancer therapy. SIGNIFICANCE: These findings demonstrate how the therapeutic benefit of CHK1 inhibitors may potentially be enhanced and could have implications for patient selection and future development of new combination therapies.


Asunto(s)
Afidicolina/farmacología , Quinasa 1 Reguladora del Ciclo Celular (Checkpoint 1)/antagonistas & inhibidores , Neoplasias Colorrectales/tratamiento farmacológico , Compuestos Heterocíclicos de 4 o más Anillos/farmacología , Neoplasias Pulmonares/tratamiento farmacológico , Retinoides/farmacología , Apoptosis , Ciclo Celular , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Neoplasias Colorrectales/genética , Neoplasias Colorrectales/patología , Daño del ADN , ADN Polimerasa I/antagonistas & inhibidores , ADN Polimerasa I/genética , ADN Polimerasa I/metabolismo , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa II/genética , ADN Polimerasa II/metabolismo , ADN Polimerasa beta , Drogas en Investigación/farmacología , Inhibidores Enzimáticos/farmacología , Técnicas de Silenciamiento del Gen , Humanos , Neoplasias Pulmonares/genética , Neoplasias Pulmonares/patología , Proteínas de Neoplasias/antagonistas & inhibidores , Proteínas de Unión a Poli-ADP-Ribosa/antagonistas & inhibidores , Proteínas de Unión a Poli-ADP-Ribosa/genética , Proteínas de Unión a Poli-ADP-Ribosa/metabolismo , ARN Interferente Pequeño/análisis , ARN Interferente Pequeño/genética
2.
BMC Cancer ; 15: 325, 2015 Apr 29.
Artículo en Inglés | MEDLINE | ID: mdl-25924900

RESUMEN

BACKGROUND: Hepatocyte carcinoma (HCC) is one of the most common malignancies worldwide. Despite many achievements in diagnosis and treatment, HCC mortality remains high due to the malignant nature of the disease. Novel approaches, especially for targeted therapy, are being extensively explored. Gene therapy is ideal for such purpose for its specific expression of exogenous genes in HCC cells driven by tissue-specific promoter. However strategies based on correction of mutations or altered expressions of genes responsible for the development/progression of HCC have limitations because these aberrant molecules are not presented in all cancerous cells. In the current work, we adopted a novel strategy by targeting the DNA replication step which is essential for proliferation of every cancer cell. METHODS: A recombinant adenovirus with alpha fetoprotein (AFP) promoter-controlled expressions of artificial microRNAs targeting DNA polymerases α, δ, ε and recombinant active Caspase 3, namely Ad/AFP-Casp-AFP-amiR, was constructed. RESULTS: The artificial microRNAs could efficiently inhibit the expression of the target polymerases in AFP-positive HCC cells at both RNA and protein levels, and HCC cells treated with the recombinant virus Ad/AFP-Casp-AFP-amiR exhibited significant G0/1 phase arrest. The proliferation of HCC cells were significantly inhibited by Ad/AFP-Casp-AFP-amiR with increased apoptosis. On the contrary, the recombinant adenovirus Ad/AFP-Casp-AFP-amiR did not inhibit the expression of DNA polymerases α, δ or ε in AFP-negative human normal liver cell HL7702, and showed no effect on the cell cycle progression, proliferation or apoptosis. CONCLUSIONS: Inhibition of DNA polymerases α, δ and ε by AFP promoter-driven artificial microRNAs may lead to effective growth arrest of AFP-positive HCC cells, which may represent a novel strategy for gene therapy by targeting the genes that are essential for the growth/proliferation of cancer cells, avoiding the limitations set by any of the individually altered gene.


Asunto(s)
Carcinoma Hepatocelular/genética , ADN Polimerasa III/genética , ADN Polimerasa II/genética , ADN Polimerasa I/genética , Neoplasias Hepáticas/genética , Adenoviridae/genética , Animales , Apoptosis/genética , Carcinoma Hepatocelular/patología , Carcinoma Hepatocelular/terapia , Línea Celular Tumoral , ADN Polimerasa I/antagonistas & inhibidores , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa III/antagonistas & inhibidores , Terapia Genética , Humanos , Neoplasias Hepáticas/patología , Neoplasias Hepáticas/terapia , Ratones , MicroARNs/genética , Terapia Molecular Dirigida , Regiones Promotoras Genéticas , Ensayos Antitumor por Modelo de Xenoinjerto
3.
Reprod Toxicol ; 43: 67-71, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24269554

RESUMEN

Recognition of the potential vulnerability of children and newborns and protection of their health is essential, especially regarding to genotoxic compounds. Benzo(a)pyrene B(a)P a commonly found carcinogen, and its metabolite BPDE, are known to cross the placenta. To investigate how well newborns are able to cope with BPDE-induced DNA damage, a recent developed nucleotide excision repair cell phenotype assay was applied in a pilot study of 25 newborn daughters and their mothers, using the Alkaline Comet Assay and taking demographic data into account. Newborns seemed to be less able to repair BPDE-induced DNA damage since lower repair capacity levels were calculated compared to their mothers although statistical significance was not reached. Assessment of repair capacity in combination with genotypes will provide important information to support preventive strategies in neonatal care and to define science based exposure limits for pregnant women and children.


Asunto(s)
7,8-Dihidro-7,8-dihidroxibenzo(a)pireno 9,10-óxido/metabolismo , Aductos de ADN/metabolismo , Reparación del ADN , Afidicolina/farmacología , Células Cultivadas , Ensayo Cometa , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa III/antagonistas & inhibidores , Inhibidores Enzimáticos/farmacología , Femenino , Humanos , Recién Nacido , Leucocitos Mononucleares/efectos de los fármacos , Leucocitos Mononucleares/metabolismo , Madres , Núcleo Familiar , Proyectos Piloto , Embarazo
4.
RNA ; 16(5): 904-12, 2010 May.
Artículo en Inglés | MEDLINE | ID: mdl-20357345

RESUMEN

Alternative splicing accounts for much of the complexity in higher eukaryotes. Thus, its regulation must allow for flexibility without hampering either its specificity or its fidelity. The mechanisms involved in alternative splicing regulation, especially those acting through coupling with transcription, have not been deeply studied in in vivo models. Much of our knowledge comes from in vitro approaches, where conditions can be precisely controlled at the expense of losing several levels of regulation present in intact cells. Here we studied the relative order of removal of the introns flanking a model alternative cassette exon. We show that there is a preferential removal of the intron downstream from the cassette exon before the upstream intron has been removed. Most importantly, both cis-acting mutations and trans-acting factors that regulate the model alternative splicing event differentially affect the relative order of removal. However, reduction of transcriptional elongation causing higher inclusion of the cassette exon does not change the order of intron removal, suggesting that the assumption, according to the "first come, first served" model, that slow elongation promotes preferential excision of the upstream intron has to be revised. We propose instead that slow elongation favors commitment to exon inclusion during spliceosome assembly. Our results reveal that measuring the order of intron removal may be a straightforward read-out to discriminate among different mechanisms of alternative splice site selection.


Asunto(s)
Empalme Alternativo , Intrones , Secuencia de Bases , Línea Celular , ADN Polimerasa II/antagonistas & inhibidores , Cartilla de ADN/genética , Exones , Fibronectinas/genética , Humanos , Cinética , Modelos Biológicos , Mutación , Precursores del ARN/genética , Precursores del ARN/metabolismo , Sitios de Empalme de ARN , Transfección
5.
FEBS Lett ; 572(1-3): 75-9, 2004 Aug 13.
Artículo en Inglés | MEDLINE | ID: mdl-15304327

RESUMEN

Antioxidant protein Peroxiredoxin V (PrxV) is located in mitochondria and peroxisomes but is also present in the nucleus. Here, we show that nuclear PrxV associates with coilin-containing bodies suggesting possible interaction of this protein with transcription complexes. We also studied etoposide-induced phosphorylation of histone H2AX (gamma-H2AX) in human cells in which PrxV activity was downregulated (knockdown, KD-clones) or compromised by overexpression of redox-negative (RD) protein. In KD clones, but not in RD-clones, formation of etoposide-induced gamma-H2AX was increased, indicating that PrxV inhibits conversion of topoisomerase II cleavage complexes into double-strand DNA breaks but this inhibition is not caused by its antioxidant activity.


Asunto(s)
Daño del ADN/efectos de los fármacos , Etopósido/farmacología , Regulación de la Expresión Génica/efectos de los fármacos , Peroxidasas/genética , Secuencia de Bases , Carcinoma de Pulmón de Células no Pequeñas , Línea Celular , Núcleo Celular/enzimología , Células Clonales , Clonación Molecular , Daño del ADN/efectos de la radiación , ADN Polimerasa II/antagonistas & inhibidores , Cartilla de ADN , Citometría de Flujo , Regulación de la Expresión Génica/genética , Células HeLa , Histonas/efectos de los fármacos , Histonas/metabolismo , Humanos , Neoplasias Pulmonares , Neoplasias , Peroxirredoxinas , Fosfolipasas A/genética , Fosforilación
6.
Bioorg Med Chem ; 12(5): 957-62, 2004 Mar 01.
Artículo en Inglés | MEDLINE | ID: mdl-14980608

RESUMEN

We found a novel inhibitor specific to eukaryotic DNA polymerase epsilon(pol epsilon) from plant cultured cells, Nicotina tabacum L. The compound (compound 1) was a dipeptide alcohol, L-homoserylaminoethanol. The 50% inhibition of pol epsilon activity by the compound was 43.6 microg/mL, and it had almost no effect on the activities of the other eukaryotic DNA polymerases such as alpha, beta, gamma and delta, prokaryotic DNA polymerases, nor DNA metabolic enzymes such as human telomerase, human immunodeficiency virus type 1 reverse transcriptase, T7 RNA polymerase, human DNA topoisomerase I and II, T4 polynucleotide kinase and bovine deoxyribonuclease I. Kinetic studies showed that inhibition of pol epsilon by the compound was non-competitive with respect to both template-primer DNA and nucleotide substrate. We succeeded in chemically synthesizing the stereoisomers, L-homoserylaminoethanol and D-homoserylaminoethanol, and found both were effective to the same extent. The IC(50) values of L- and D-homoserylaminoethanols for pol epsilon were 42.0 and 41.5 microg/mL, respectively. This represents the second discovery of a pol epsilon-specific inhibitor, and the first report on a water-soluble peptide-like compound as the inhibitor, which is required in biochemical studies of pol epsilon.


Asunto(s)
ADN Polimerasa II/antagonistas & inhibidores , Dipéptidos/farmacología , Etanolaminas/farmacología , Homoserina/farmacología , Nicotiana/química , Células Cultivadas , Dipéptidos/síntesis química , Etanolaminas/síntesis química , Homoserina/análogos & derivados , Homoserina/síntesis química , Humanos , Concentración 50 Inhibidora , Cinética , Células Vegetales , Plantas/química , Solubilidad , Estereoisomerismo , Nicotiana/citología
7.
Mol Cell Biol ; 24(1): 217-27, 2004 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-14673157

RESUMEN

Relocation of euchromatic genes near the heterochromatin region often results in mosaic gene silencing. In Saccharomyces cerevisiae, cells with the genes inserted at telomeric heterochromatin-like regions show a phenotypic variegation known as the telomere-position effect, and the epigenetic states are stably passed on to following generations. Here we show that the epigenetic states of the telomere gene are not stably inherited in cells either bearing a mutation in a catalytic subunit (Pol2) of replicative DNA polymerase epsilon (Pol epsilon) or lacking one of the nonessential and histone fold motif-containing subunits of Pol epsilon, Dpb3 and Dpb4. We also report a novel and putative chromatin-remodeling complex, ISW2/yCHRAC, that contains Isw2, Itc1, Dpb3-like subunit (Dls1), and Dpb4. Using the single-cell method developed in this study, we demonstrate that without Pol epsilon and ISW2/yCHRAC, the epigenetic states of the telomere are frequently switched. Furthermore, we reveal that Pol epsilon and ISW2/yCHRAC function independently: Pol epsilon operates for the stable inheritance of a silent state, while ISW2/yCHRAC works for that of an expressed state. We therefore propose that inheritance of specific epigenetic states of a telomere requires at least two counteracting regulators.


Asunto(s)
Adenosina Trifosfatasas/metabolismo , ADN Polimerasa II/antagonistas & inhibidores , Saccharomyces cerevisiae/genética , Telómero/metabolismo , Factores de Transcripción/metabolismo , Cromatina/metabolismo , Replicación del ADN/fisiología , Saccharomyces cerevisiae/enzimología
8.
Biochem Biophys Res Commun ; 312(4): 1025-32, 2003 Dec 26.
Artículo en Inglés | MEDLINE | ID: mdl-14651974

RESUMEN

Vitamin B(6) compounds such as pyridoxal 5(')-phosphate (PLP), pyridoxal (PL), pyridoxine (PN), and pyridoxamine (PM), which reportedly have anti-angiogenic and anti-cancer effects, were thought to be inhibitors of some types of eukaryotic DNA polymerases. PL moderately inhibited only the activities of calf DNA polymerase alpha (pol alpha), while PN and PM had no inhibitory effects on any of the polymerases tested. On the other hand, PLP, a phosphated form of PL, was potentially a strong inhibitor of pol alpha and epsilon from phylogenetic-wide organisms including mammals, fish, insects, plants, and protists. PLP did not suppress the activities of prokaryotic DNA polymerases such as Escherichia coli DNA polymerase I and Taq DNA polymerase, or DNA-metabolic enzymes such as deoxyribonuclease I. For pol alpha and epsilon, PLP acted non-competitively with the DNA template-primer and competitively with the nucleotide substrate. Since PL was converted to PLP in vivo after being incorporated into human cancer cells, the anti-angiogenic and anti-cancer effects caused by PL must have been caused by the inhibition of pol alpha and epsilon activities after conversion to PLP.


Asunto(s)
Supervivencia Celular/efectos de los fármacos , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa II/metabolismo , ADN Polimerasa I/antagonistas & inhibidores , ADN Polimerasa I/metabolismo , Fosfato de Piridoxal/química , Fosfato de Piridoxal/farmacología , ADN Polimerasa I/química , ADN Polimerasa II/química , Relación Dosis-Respuesta a Droga , Inhibidores Enzimáticos , Células HeLa , Humanos , Piridoxal/química , Piridoxal/metabolismo , Sensibilidad y Especificidad
9.
Biochem J ; 370(Pt 1): 299-305, 2003 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-12435270

RESUMEN

Sulphoquinovosyl diacylglycerol (SQDG) was reported as a selective inhibitor of eukaryotic DNA polymerases alpha and beta [Hanashima, Mizushina, Ohta, Yamazaki, Sugawara and Sakaguchi (2000) Jpn. J. Cancer Res. 91, 1073-1083] and an immunosuppressive agent [Matsumoto, Sahara, Fujita, Shimozawa, Takenouchi, Torigoe, Hanashima, Yamazaki, Takahashi, Sugawara et al. (2002) Transplantation 74, 261-267]. The purpose of this paper is to elucidate the biochemical properties of the inhibition more precisely. As expected, SQDG could inhibit the activities of mammalian DNA polymerases such as alpha, delta, eta and kappa in vitro in the range of 2-5 micro M, and beta and lambda in vitro in the range of 20-45 micro M. However, SQDG could inhibit only mammalian DNA polymerases epsilon (pol epsilon) activity at less than 0.04 micro M. SQDG bound more tightly to mammalian pol epsilon than the other mammalian polymerases tested. Moreover, SQDG could inhibit the activities of all the polymerases from animals such as fish and insect, but not of the polymerases from plant and prokaryotes. SQDG should, therefore, be called a mammalian pol epsilon-specific inhibitor or animal polymerase-specific inhibitor. To our knowledge, this represents the first report about an inhibitor specific to mammalian pol epsilon.


Asunto(s)
ADN Polimerasa II/antagonistas & inhibidores , Inhibidores Enzimáticos/farmacología , Glucolípidos/farmacología , Inhibidores Enzimáticos/química , Glucolípidos/química , Humanos , Cinética
10.
Int J Dev Neurosci ; 20(6): 491-6, 2002 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-12392752

RESUMEN

The relative proportions of DNA-polymerases alpha, beta, delta and epsilon (pols alpha, beta, delta and epsilon ) activities in isolated neuronal and astroglial cell fractions from developing, adult and aging rat brain cerebral cortex, were examined. This was achieved through a protocol that takes advantage of the reported differential sensitivities of different DNA-polymerases towards certain inhibitors like butylphenyl and butylanilino nucleotide analogs, 2',3'-dideoxythymidine triphosphate (ddTTP), monoclonal antibody of human alpha polymerase and the use of two template primers as substrates. The results indicate that while DNA-polymerase beta (pol beta) is the predominant enzyme, significant levels of DNA-polymerases alpha and delta/epsilon (pols alpha and delta/epsilon ) are also present in both cell types at all the post-natal ages studied. A notable difference regarding the relative abundance of DNA-polymerases other than beta is the higher percentage of pol delta/epsilon in neurons and a more sustained pol alpha activity through the life span in astroglia. The presence of detectable proportion of DNA-polymerases other than beta (particularly the delta/epsilon type) may be taken to indicate their role in long patch base excision repair as well as in other modes of DNA repair.


Asunto(s)
Envejecimiento/genética , Astrocitos/enzimología , Diferenciación Celular/genética , Corteza Cerebral/enzimología , Corteza Cerebral/crecimiento & desarrollo , Reparación del ADN/genética , ADN Polimerasa Dirigida por ADN/metabolismo , Neuronas/enzimología , Animales , Animales Recién Nacidos , ADN/genética , ADN/metabolismo , ADN Polimerasa I/antagonistas & inhibidores , ADN Polimerasa I/genética , ADN Polimerasa I/metabolismo , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa II/genética , ADN Polimerasa II/metabolismo , ADN Polimerasa III/antagonistas & inhibidores , ADN Polimerasa III/genética , ADN Polimerasa III/metabolismo , ADN Polimerasa beta/antagonistas & inhibidores , ADN Polimerasa beta/genética , ADN Polimerasa beta/metabolismo , ADN Polimerasa Dirigida por ADN/genética , Inhibidores Enzimáticos/farmacología , Inhibidores de la Síntesis del Ácido Nucleico , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Ratas , Ratas Wistar , Fracciones Subcelulares
11.
Biochemistry ; 41(24): 7610-6, 2002 Jun 18.
Artículo en Inglés | MEDLINE | ID: mdl-12056892

RESUMEN

A number of compounds used for cancer chemotherapy exert their effects by inhibiting DNA replication. New inhibitors of DNA polymerases, therefore, could be potential candidates for new anti-cancer drugs. This study tested the effects of two phenalenone-skeleton-based compounds, which were isolated from a marine-derived fungus Penicillium sp., sculezonone-B (SCUL-B) and sculezonone-A (SCUL-A), upon DNA polymerase activity. Both compounds inhibited bovine DNA polymerases alpha and gamma, moderately affected the activity of DNA polymerase epsilon, and had almost no effect on HIV-reverse transcriptase and an E. coli DNA polymerase I Klenow fragment. Most notably, whereas SCUL-A inhibited pol beta (IC(50) = 17 microM), SCUL-B has only a weak influence upon this polymerase (IC(50) = 90 microM). Kinetic studies showed that inhibition of both DNA polymerases alpha and beta by either SCUL-A or SCUL-B was competitive with respect to dTTP substrate and noncompetitive with the template-primer. Whereas pol alpha inhibition by SCUL-B is competitive with respect to dATP, the inhibition by SCUL-A was found to be a mixed type with dATP substrate. The K(i) values of SCUL-B were calculated to be 1.8 and 6.8 microM for DNA polymerases alpha and gamma, respectively. The K(i) of DNA polymerase beta for SCUL-A was 12 microM and that for DNA polymerase alpha, 16 microM. Therefore, deletion of the OH-group at C12 enhanced inhibition of DNA polymerase beta. Since computational analyses of these two inhibitors revealed a remarkable difference in the distribution of negative electrostatic charge on the surface of molecules, we infer that different electrostatic charges might elicit different inhibition spectra from these two compounds.


Asunto(s)
Bivalvos/microbiología , Inhibidores Enzimáticos/química , Inhibidores de la Síntesis del Ácido Nucleico , Penicillium/química , Fenalenos , Hidrocarburos Policíclicos Aromáticos/química , Compuestos Policíclicos/química , Animales , Bovinos , ADN Polimerasa I/antagonistas & inhibidores , ADN Polimerasa I/metabolismo , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa II/metabolismo , ADN Polimerasa beta/antagonistas & inhibidores , ADN Polimerasa beta/metabolismo , ADN Polimerasa gamma , ADN Polimerasa Dirigida por ADN/metabolismo , Inhibidores Enzimáticos/farmacología , Humanos , Cinética , Hidrocarburos Policíclicos Aromáticos/farmacología , Compuestos Policíclicos/farmacología , Ratas , Electricidad Estática , Especificidad por Sustrato
12.
Oncol Rep ; 9(4): 839-44, 2002.
Artículo en Inglés | MEDLINE | ID: mdl-12066219

RESUMEN

We previously reported that enhanced active efflux of cisplatin and increased GSH level were observed in KCP-4 cells. In the present study, KCP-4 cells were found to be cross-resistant to ultraviolet (UV) compared with parental KB-3-1 cells. Enhanced nucleotide excision repair (NER) was verified by time-dependent repair of UV-induced DNA damage. In addition, the amount of platinum bound to DNA after exposure to cisplatin decreased in a time-dependent manner in KCP-4 cells and this was reversed by aphidicolin, a DNA polymerase inhibitor. In stationary phase cultures, aphidicolin increased the sensitivity of KCP-4 cells to cisplatin. The expression of xeroderma pigmentosum complementation group F (XPF), an endonuclease involved in NER, was upregulated in KCP-4 cells. In KCP-4 cells the expression of hMSH6, one of the mismatch repair (MMR) factors, was decreased compared to parental KB-3-1 and revertant KCP-4R cells. However, KCP-4 cells were cross-resistant to oxaliplatin, and microsatellite instability was not observed in them. These findings suggest that the enhanced NER activity for DNA damage caused by cisplatin may be involved in cisplatin resistance in KCP-4 cells.


Asunto(s)
Antineoplásicos/farmacología , Cisplatino/farmacología , Daño del ADN/efectos de la radiación , Reparación del ADN/fisiología , ADN de Neoplasias/fisiología , Resistencia a Antineoplásicos , Células KB/efectos de los fármacos , Afidicolina/farmacología , Disparidad de Par Base/genética , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa II/metabolismo , Proteínas de Unión al ADN/metabolismo , Inhibidores Enzimáticos/farmacología , Humanos , Immunoblotting , Células KB/metabolismo , Células KB/efectos de la radiación , Repeticiones de Microsatélite , Compuestos Organoplatinos/farmacología , Oxaliplatino , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Sales de Tetrazolio , Tiazoles , Rayos Ultravioleta , Regulación hacia Arriba
13.
Antimicrob Agents Chemother ; 46(5): 1610-3, 2002 May.
Artículo en Inglés | MEDLINE | ID: mdl-11959615

RESUMEN

Tenofovir diphosphate (PMPApp) is a weak inhibitor of DNA polymerases (pol) alpha, delta, and epsilon*, with values for the Ki for PMPApp ((PMPApp)Ki) relative to the Km for dATP ((dATP)Km) of 10.2, 10.2, and 15.2, respectively. Its incorporation into DNA was about 1,000-fold less efficient than that of dATP, with (PMPApp)Km values 350-, 2,155-, and 187-fold higher than (dATP)Km values for pol alpha, delta, and epsilon*, respectively.


Asunto(s)
Adenina/análogos & derivados , Adenina/metabolismo , Fármacos Anti-VIH/metabolismo , ADN Polimerasa Dirigida por ADN/metabolismo , Inhibidores de la Síntesis del Ácido Nucleico , Organofosfonatos , Compuestos Organofosforados/metabolismo , Inhibidores de la Transcriptasa Inversa/metabolismo , Adenina/farmacología , Animales , Fármacos Anti-VIH/farmacología , ADN Polimerasa I/antagonistas & inhibidores , ADN Polimerasa I/metabolismo , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa II/metabolismo , ADN Polimerasa III/antagonistas & inhibidores , ADN Polimerasa III/metabolismo , Compuestos Organofosforados/farmacología , Ratas , Inhibidores de la Transcriptasa Inversa/farmacología , Tenofovir
14.
Biochem J ; 362(Pt 3): 685-92, 2002 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-11879196

RESUMEN

Polyacetylenetriol (PAT), a natural marine product from the Mediterranean sea sponge Petrosia sp., was found to be a novel general potent inhibitor of DNA polymerases. It inhibits equally well the RNA- and DNA-dependent DNA polymerase activities of retroviral reverse transcriptases (RTs) (i.e. of HIV, murine leukaemia virus and mouse mammary tumour virus) as well as cellular DNA polymerases (i.e. DNA polymerases alpha and beta and Escherichia coli polymerase I). A study of the mode and mechanism of the polymerase inhibition by PAT has been conducted with HIV-1 RT. PAT was shown to be a reversible non-competitive inhibitor. PAT binds RT independently and at a site different from that of the primer-template and dNTP substrates with high affinity (K(i)=0.51 microM and K(i)=0.53 microM with dTTP and with dGTP as the variable substrates respectively). Blocking the polar hydroxy groups of PAT has only a marginal effect on the inhibitory capacity, thus hydrophobic interactions are likely to play a major role in inhibiting RT. Preincubation of RT with the primer-template substrate prior to the interaction with PAT reduces substantially the inhibition capacity, probably by preventing these contacts. PAT does not interfere with the first step of polymerization, the binding of RT to DNA, nor does the inhibitor interfere with the binding of dNTP to RT/DNA complex, as evident from the steady-state kinetic study, whereby K(m) remains unchanged. We assume, therefore, that PAT interferes with subsequent catalytic steps of DNA polymerization. The inhibitor may alter the optimal stereochemistry of the polymerase active site relative to the primer terminus, bound dNTP and the metal ions that are crucial for efficient catalysis or, alternatively, may interfere with the thumb sub-domain movement and, thus, with the translocation of the primer-template following nucleotide incorporation.


Asunto(s)
Acetileno/farmacología , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Inhibidores de la Síntesis del Ácido Nucleico , Polímeros/farmacología , ADN Polimerasa Dirigida por ARN/metabolismo , Inhibidores de la Transcriptasa Inversa/farmacología , Acetileno/análogos & derivados , Alquinos , Animales , Secuencia de Bases , ADN Polimerasa I/antagonistas & inhibidores , ADN Polimerasa II/antagonistas & inhibidores , Escherichia coli/enzimología , VIH-1/enzimología , Humanos , Cinética , Virus de la Leucemia Murina/enzimología , Virus del Tumor Mamario del Ratón/enzimología , Ratones , Datos de Secuencia Molecular , Oligodesoxirribonucleótidos/química , Oligodesoxirribonucleótidos/metabolismo , Poliinos
15.
Acta Virol ; 45(2): 109-24, 2001 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-11719981

RESUMEN

Activities of the primase (Pr)-alpha DNA polymerase (pol) enzyme complex belonging to the naturally occurring reaction systems represented by special NP complexes harboring an extrachromosomal DNA identical with avian myeloblastosis virus (AMV) core-bound DNA (J. Riman, A. Sulová and K. Horská, Acta virol. 39, 149-159 (1995); J. Ríman and A. Sulová, Acta virol. 41, 181-192 (1997)) were studied in the absence and presence of carbonyldiphosphonate (COMDP), mimosine (MIMO), to it related ciclopirox olamine (CPX) and butylphenyl deoxyguanosine-5'-triphosphate (BuPdGTP). Reaction products radioactively labeled for RNA and DNA and synthesized with the common four ribonucleoside triphosphates (rNTPs) or rNTPs and deoxyribonucleoside triphosphates (dNTPs) in the reaction medium, were analyzed by polyacrylamide gel electrophoresis (PAGE) at denaturing conditions. It was shown that COMDP strongly activates the Pr and uncouples its activity from that of alpha DNA pol with accumulation of initiator (i) RNAs of the basic length. This phenomenon is not affected by BuPdGTP. MIMO, in contrast, stimulates both pol activities of this enzyme complex and preserves their mutual coupling. The effects of COMDP, MIMO and CPX seem to be modulated by concentration of the ambient dNTPs. Addition of dNTPs to rNTPs makes the effects of COMDP and MIMO mutually exclusive, suggesting that both these agents, though chemically quite different, are competing for one active site responsible for coupling these both pol activities into the one Pr-alpha DNA pol reaction.


Asunto(s)
Virus de la Mieloblastosis Aviar/genética , ADN Polimerasa I/metabolismo , ADN Primasa/metabolismo , ADN Viral/biosíntesis , Proteínas Nucleares/metabolismo , Proteínas del Núcleo Viral/metabolismo , Virus de la Mieloblastosis Aviar/fisiología , Sitios de Unión , ADN Polimerasa II/antagonistas & inhibidores , ADN Viral/efectos de los fármacos , Nucleótidos de Desoxiguanina/farmacología , Difosfonatos/farmacología , Inhibidores Enzimáticos/farmacología , Mimosina/farmacología , Proteínas/metabolismo , Replicación Viral
16.
FEBS Lett ; 505(1): 141-6, 2001 Sep 07.
Artículo en Inglés | MEDLINE | ID: mdl-11557057

RESUMEN

Carbonyldiphosphonate (COMDP), a selective inhibitor of DNA polymerase (pol) epsilon, strongly stimulates expression of the ribo and deoxyribo modes of primase (Pr) activities of the Pr-DNA pol alpha enzyme complex associated with special cytoplasmic nucleoprotein complexes of chicken leukemic myeloblasts [J. Ríman and A. Sulová, Acta Virol. 41 (1997) 181-214]. Besides stimulation, COMDP uncouples the Pr activities from those of DNA pol alpha, inducing in this way a unique phenomenon of accumulation of primers of basic length. In the presence of dNTPs, the COMDP effect is counteracted by excess of mimosine. The mutually exclusive effects of these agents are discussed.


Asunto(s)
ADN Polimerasa II/antagonistas & inhibidores , ADN Primasa/metabolismo , Cartilla de ADN/metabolismo , Difosfonatos/farmacología , Inhibidores Enzimáticos/farmacología , ADN Polimerasa I/metabolismo , ADN Primasa/efectos de los fármacos , Desoxirribonucleótidos/metabolismo , Mimosina/metabolismo , Ribonucleótidos/metabolismo
17.
Nucleic Acids Res ; 27(19): 3799-804, 1999 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-10481018

RESUMEN

The contribution of human DNA polymerase epsilon to nuclear DNA replication was studied. Antibody K18 that specifically inhibits DNA polymerase activity of human DNA polymerase epsilon in vitro significantly inhibits DNA synthesis both when microinjected into nuclei of exponentially growing human fibroblasts and in isolated HeLa cell nuclei. The capability of this neutralizing antibody to inhibit DNA synthesis in cells is comparable to that of monoclonal antibody SJK-132-20 against DNA polymerase alpha. Contrary to the antibody against DNA polymerase alpha, antibody K18 against DNA polymerase epsilon did not inhibit SV40 DNA replication in vitro. These results indicate that DNA polymerase epsilon plays a role in replicative DNA synthesis in proliferating human cells like DNA polymerase alpha, and that this role for DNA polymerase epsilon cannot be modeled by SV40 DNA replication.


Asunto(s)
ADN Polimerasa II/metabolismo , Replicación del ADN , ADN Viral/biosíntesis , Virus 40 de los Simios/genética , Animales , Anticuerpos/inmunología , Bromodesoxiuridina/metabolismo , Dominio Catalítico , Bovinos , Línea Celular , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa II/inmunología , Fibroblastos/citología , Células HeLa , Humanos , Pruebas de Neutralización , Conejos , Virus 40 de los Simios/fisiología , Replicación Viral
18.
Cell Biol Int ; 23(12): 859-62, 1999.
Artículo en Inglés | MEDLINE | ID: mdl-10772760

RESUMEN

Aphidicolin, a selective inhibitor of DNA polymerase, totally blocks DNA replication in the micronucleus but not in the macronucleus of Paramecium caudatum. The ciliates no longer divide and after 4 days the DNA content of the macronucleus has increased by 64%. Concomitantly the cell volume has increased by 53%.


Asunto(s)
Afidicolina/farmacología , División Celular/efectos de los fármacos , Núcleo Celular/efectos de los fármacos , Replicación del ADN/efectos de los fármacos , Inhibidores Enzimáticos/farmacología , Paramecium/efectos de los fármacos , Animales , Núcleo Celular/genética , ADN Polimerasa II/antagonistas & inhibidores , ADN Protozoario/efectos de los fármacos , ADN Protozoario/genética , ADN Protozoario/metabolismo , Citometría de Flujo , Microscopía Confocal , Paramecium/citología , Paramecium/fisiología
19.
J Med Chem ; 41(12): 2040-6, 1998 Jun 04.
Artículo en Inglés | MEDLINE | ID: mdl-9622545

RESUMEN

Novel beta-L-2',3'-dideoxy-3'-fluoro nucleosides were synthesized and further converted to their 5'-triphosphates. Their inhibitory activities against hepatitis B virus (HBV) and duck hepatitis B virus (DHBV) DNA polymerases, human immunodeficiency virus (HIV) reverse transcriptase (RT), and the cellular DNA polymerases alpha, beta, gamma, delta, and epsilon were investigated and compared with those of the corresponding 3'-fluoro-modified beta-d-analogues. The 5'-triphosphates of 3'-deoxy-3'-fluoro-beta-L-thymidine (beta-L-FTTP), 2',3'-dideoxy-3'-fluoro-beta-L-cytidine (beta-L-FdCTP), and 2',3'-dideoxy-3'-fluoro-beta-l-5-methylcytidine (beta-L-FMetdCTP) emerged as effective inhibitors of HBV/DHBV DNA polymerases (IC50 = 0.25-10.4 microM). They were either equally (FTTP) or less (FMetdCTP, FdCTP) effective than their beta-d-counterparts. Also the 5'-triphosphate of beta-L-thymidine (beta-L-TTP) was shown to be a strong inhibitor of these two viral enzymes (IC50 = 0.46/1.0 microM). However, all beta-L-FdNTPs (also beta-L-TTP) were inactive against HIV-RT, a result which contrasts sharply with the high efficiency of the beta-D- FdNTPs against this polymerase. Between the cellular DNA polymerases only the beta and gamma enzymes displayed a critical susceptibility to beta-D-FdNTPs which is largely abolished by the beta-L-enantiomers. These results recommend beta-L-FTdR, beta-L-FCdR, and beta-L-FMetCdR for further evaluation as selective inhibitors of HBV replication at the cellular level.


Asunto(s)
Inhibidores Enzimáticos , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Hepatitis B/enzimología , Inhibidores de la Síntesis del Ácido Nucleico , Organofosfatos , Nucleósidos de Pirimidina , Animales , Bovinos , ADN Polimerasa I/antagonistas & inhibidores , ADN Polimerasa I/aislamiento & purificación , ADN Polimerasa II/antagonistas & inhibidores , ADN Polimerasa II/aislamiento & purificación , ADN Polimerasa III/antagonistas & inhibidores , ADN Polimerasa III/aislamiento & purificación , ADN Polimerasa beta/antagonistas & inhibidores , ADN Polimerasa beta/aislamiento & purificación , ADN Polimerasa gamma , ADN Polimerasa Dirigida por ADN/aislamiento & purificación , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/farmacología , Transcriptasa Inversa del VIH/aislamiento & purificación , Células HeLa , Virus de la Hepatitis B del Pato/enzimología , Humanos , Cinética , Organofosfatos/síntesis química , Organofosfatos/química , Organofosfatos/farmacología , Placenta/enzimología , Nucleósidos de Pirimidina/síntesis química , Nucleósidos de Pirimidina/química , Nucleósidos de Pirimidina/farmacología , Inhibidores de la Transcriptasa Inversa/síntesis química , Inhibidores de la Transcriptasa Inversa/química , Inhibidores de la Transcriptasa Inversa/farmacología , Estereoisomerismo , Relación Estructura-Actividad
20.
Acta Virol ; 41(4): 193-204, 1997 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-9391650

RESUMEN

Nucleoprotein (NP) complexes constituting the material of the postmicrosomal sediment (POMS) and its three basic components (A, B, C) (Ríman and Sulová, 1997a), harboring an extrachromosomal DNA closely related to AMV DNA were found to possess DNA- and RNA-synthesizing activities (SAs) reflecting the ability of this material to be intensely labelled for DNA and RNA, respectively. The types of these NA-SAs were compatible with those significant for a lagging DNA strand synthesis (LSS). The use of selective inhibitors and of the proliferating cell nuclear antigen (PCNA) disclosed a successive involvement of alpha DNA polymerase (pol) and PCNA-insensitive delta DNA pol in LSS. In this respect, we show gradual changes in the representation of activities (As) of both mentioned DNA pols in the NP complexes of the individual POMS components. Those of POMS component C contained alpha DNA pol As only, while a distinct portion of DNA SAs of POMS component B was represented on expense of alpha DNA pol As by PCNA-insensitive delta DNA pol (epsilon DNA pol), As which represented practically all the DNA SAs of POMS component A. The type of RNA SAs of this material represented mostly by primase (Pr) As corresponded well with the nature of LSS. An exception was represented by a minor portion of RNA-SAs of POMS component A which was alpha amanitin-sensitive like RNA pol II. Moreover, analyzing this natural model replication system, we found that the carbonyldiphosphonate (COMDP), a selective inhibitor of the PCNA-insensitive delta DNA pol, was a strong activator of Pr-As and/or Pr-alpha DNA pol As of NP complexes of POMS component C.


Asunto(s)
Virus de la Mieloblastosis Aviar/genética , ADN Viral/biosíntesis , Nucleoproteínas/metabolismo , Afidicolina/farmacología , ADN Polimerasa II/antagonistas & inhibidores , ADN Primasa/metabolismo , ADN Viral/metabolismo , Nucleótidos de Desoxiguanina/farmacología , Difosfonatos/farmacología , Inhibidores Enzimáticos/farmacología , Inhibidores de la Síntesis del Ácido Nucleico , Antígeno Nuclear de Célula en Proliferación/farmacología , Moldes Genéticos , Proteínas del Núcleo Viral/metabolismo
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