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1.
BMC Plant Biol ; 24(1): 487, 2024 Jun 01.
Article En | MEDLINE | ID: mdl-38824521

Soil salinity is a significant challenge in agriculture, particularly in arid and semi-arid regions such as Pakistan, leading to soil degradation and reduced crop yields. The present study assessed the impact of different salinity levels (0, 25, and 50 mmol NaCl) and biochar treatments (control, wheat-straw biochar, rice-husk biochar, and sawdust biochar applied @ 1% w/w) on the germination and growth performance of wheat. Two experiments: a germination study and a pot experiment (grown up to maturity), were performed. The results showed that NaCl-stress negatively impacted the germination parameters, grain, and straw yield, and agronomic and soil parameters. Biochar treatments restored these parameters compared to control (no biochar), but the effects were inconsistent across NaCl levels. Among the different biochars, wheat-straw biochar performed better than rice-husk and sawdust-derived biochar regarding germination and agronomic parameters. Biochar application notably increased soil pHs and electrical conductivity (ECe). Imposing NaCl stress reduced K concentrations in the wheat shoot and grains with concomitant higher Na concentrations in both parts. Parameters like foliar chlorophyll content (a, b, and total), stomatal and sub-stomatal conductance, and transpiration rate were also positively influenced by biochar addition. The study confirmed that biochar, particularly wheat-straw biochar, effectively mitigated the adverse effects of soil salinity, enhancing both soil quality and wheat growth. The study highlighted that biochar application can minimize the negative effects of salinity stress on wheat. Specifically, the types and dosages of biochar have to be optimized for different salinity levels under field conditions.


Charcoal , Chlorophyll , Germination , Potassium , Salt Stress , Sodium , Triticum , Triticum/growth & development , Triticum/metabolism , Triticum/drug effects , Triticum/physiology , Germination/drug effects , Charcoal/pharmacology , Chlorophyll/metabolism , Potassium/metabolism , Sodium/metabolism , Seeds/growth & development , Seeds/drug effects , Seeds/metabolism , Soil/chemistry , Edible Grain/growth & development , Edible Grain/drug effects , Edible Grain/metabolism , Pakistan , Salinity
2.
PeerJ ; 12: e17475, 2024.
Article En | MEDLINE | ID: mdl-38827300

Fertilization plays a crucial role in ensuring global food security and ecological balance. This study investigated the impact of substituting innovative biological manure for chemical fertilization on rice (Oryza sativa L) productivity and soil biochemical properties based on a three-year experiment. Our results suggested rice yield and straw weight were increased under manure addition treatment. Specifically, 70% of total nitrogen (N) fertilizer substituted by biological manure derived from straw, animal waste and microbiome, led to a substantial 13.6% increase in rice yield and a remarkable 34.2% boost in straw weight. In comparison to the conventional local farmer practice of applying 165 kg N ha-1, adopting 70% of total N plus biological manure demonstrated superior outcomes, particularly in enhancing yield components and spike morphology. Fertilization treatments led to elevated levels of soil microbial biomass carbon and N. However, a nuanced comparison with local practices indicated that applying biological manure alongside urea resulted in a slight reduction in N content in vegetative and economic organs, along with decreases of 10.4%, 11.2%, and 6.1% in N recovery efficiency (NRE), respectively. Prudent N management through the judicious application of partial biological manure fertilizer in rice systems could be imperative for sustaining productivity and soil fertility in southern China.


Fertilizers , Manure , Nitrogen , Oryza , Soil , Nitrogen/metabolism , Nitrogen/analysis , Manure/analysis , Fertilizers/analysis , Oryza/growth & development , Oryza/metabolism , Soil/chemistry , China , Agriculture/methods , Soil Microbiology , Biomass , Animals , Edible Grain/growth & development , Edible Grain/metabolism
3.
Curr Biol ; 34(11): R528-R530, 2024 Jun 03.
Article En | MEDLINE | ID: mdl-38834023

The spikelet is the unit component of the spike and the site of grain production in Triticeae crops. Two new studies revealed that plant-specific transcription factors ALOG1 and PDB1 participate in modulating spikelet number and flowering time in barley and wheat.


Edible Grain , Flowers , Hordeum , Plant Proteins , Triticum , Flowers/genetics , Flowers/growth & development , Hordeum/genetics , Hordeum/growth & development , Triticum/genetics , Triticum/growth & development , Edible Grain/genetics , Edible Grain/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Gene Expression Regulation, Plant
4.
Theor Appl Genet ; 137(7): 147, 2024 Jun 04.
Article En | MEDLINE | ID: mdl-38834870

KEY MESSAGE: Major QTL for grain number per spike were identified on chromosomes 2B and 2D. Haplotypes and candidate genes of QGns.cib-2B.1 were analyzed. Grain number per spike (GNS) is one of the main components of wheat yield. Genetic dissection of their regulatory factors is essential to improve the yield potential. In present study, a recombinant inbred line population comprising 180 lines developed from the cross between a high GNS line W7268 and a cultivar Chuanyu12 was employed to identify quantitative trait loci (QTL) associated with GNS across six environments. Two major QTL, QGns.cib-2B.1 and QGns.cib-2D.1, were detected in at least four environments with the phenotypic variations of 12.99-27.07% and 8.50-13.79%, respectively. And significant interactions were observed between the two major QTL. In addition, QGns.cib-2B.1 is a QTL cluster for GNS, grain number per spikelet and fertile tiller number, and they were validated in different genetic backgrounds using Kompetitive Allele Specific PCR (KASP) markers. QGns.cib-2B.1 showed pleotropic effects on other yield-related traits including plant height, spike length, and spikelet number per spike, but did not significantly affect thousand grain weight which suggested that it might be potentially applicable in breeding program. Comparison analysis suggested that QGns.cib-2B.1 might be a novel QTL. Furthermore, haplotype analysis of QGns.cib-2B.1 indicated that it is a hot spot of artificial selection during wheat improvement. Based on the expression patterns, gene annotation, orthologs analysis and sequence variations, the candidate genes of QGns.cib-2B.1 were predicted. Collectively, the major QTL and KASP markers reported here provided a wealth of information for the genetic basis of GNS and grain yield improvement.


Chromosome Mapping , Chromosomes, Plant , Haplotypes , Phenotype , Quantitative Trait Loci , Triticum , Triticum/genetics , Triticum/growth & development , Chromosomes, Plant/genetics , Chromosome Mapping/methods , Genetic Markers , Edible Grain/genetics , Edible Grain/growth & development , Seeds/growth & development , Seeds/genetics , Plant Breeding , Alleles , Genes, Plant
5.
Theor Appl Genet ; 137(7): 150, 2024 Jun 07.
Article En | MEDLINE | ID: mdl-38847846

Grain size is a crucial agronomic trait that determines grain weight and final yield. Although several genes have been reported to regulate grain size in rice (Oryza sativa), the function of Wall-Associated Kinase family genes affecting grain size is still largely unknown. In this study, we identified GRAIN WEIGHT AND NUMBER 1 (GWN1) using map-based cloning. GWN1 encodes the OsWAK74 protein kinase, which is conserved in plants. GWN1 negatively regulates grain length and weight by regulating cell proliferation in spikelet hulls. We also found that GWN1 negatively influenced grain number by influencing secondary branch numbers and finally increased plant grain yield. The GWN1 gene was highly expressed in inflorescences and its encoded protein is located at the cell membrane and cell wall. Moreover, we identified three haplotypes of GWN1 in the germplasm. GWN1hap1 showing longer grain, has not been widely utilized in modern rice varieties. In summary, GWN1 played a very important role in regulating grain length, weight and number, thereby exhibiting application potential in molecular breeding for longer grain and higher yield.


Edible Grain , Oryza , Plant Proteins , Seeds , Oryza/genetics , Oryza/growth & development , Oryza/enzymology , Edible Grain/genetics , Edible Grain/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Seeds/growth & development , Seeds/genetics , Phenotype , Gene Expression Regulation, Plant , Cloning, Molecular , Chromosome Mapping , Haplotypes , Cell Wall/metabolism , Protein Kinases/genetics , Protein Kinases/metabolism , Genes, Plant
6.
Theor Appl Genet ; 137(7): 154, 2024 Jun 10.
Article En | MEDLINE | ID: mdl-38856926

KEY MESSAGE: Our findings highlight a valuable breeding resource, demonstrating the potential to concurrently enhance grain shape, thermotolerance, and alkaline tolerance by manipulating Gγ protein in rice. Temperate Geng/Japonica (GJ) rice yields have improved significantly, bolstering global food security. However, GJ rice breeding faces challenges, including enhancing grain quality, ensuring stable yields at warmer temperatures, and utilizing alkaline land. In this study, we employed CRISPR/Cas9 gene-editing technology to knock out the GS3 locus in seven elite GJ varieties with superior yield performance. Yield component measurements revealed that GS3 knockout mutants consistently enhanced grain length and reduced plant height in diverse genetic backgrounds. The impact of GS3 on the grain number per panicle and setting rate depended on the genetic background. GS3 knockout did not affect milling quality and minimally altered protein and amylose content but notably influenced chalkiness-related traits. GS3 knockout indiscriminately improved heat and alkali stress tolerance in the GJ varieties studied. Transcriptome analysis indicated differential gene expression between the GS3 mutants and their wild-type counterparts, enriched in biological processes related to photosynthesis, photosystem II stabilization, and pathways associated with photosynthesis and cutin, suberine, and wax biosynthesis. Our findings highlight GS3 as a breeding resource for concurrently improving grain shape, thermotolerance, and alkaline tolerance through Gγ protein manipulation in rice.


Edible Grain , Oryza , Plant Breeding , Plant Proteins , Thermotolerance , Oryza/genetics , Oryza/physiology , Oryza/growth & development , Oryza/metabolism , Thermotolerance/genetics , Edible Grain/genetics , Edible Grain/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Gene Expression Regulation, Plant , Phenotype , Gene Editing , Alkalies , CRISPR-Cas Systems , Plants, Genetically Modified/genetics
7.
Plant Mol Biol ; 114(4): 73, 2024 Jun 14.
Article En | MEDLINE | ID: mdl-38874648

Functional genomics through transgenesis has provided faster and more reliable methods for identifying, characterizing, and utilizing genes or quantitative trait loci linked to agronomic traits to target yield. The present study explored the role of Big Grain1 (BG1) gene of rice (Oryza sativa L.) in yield improvement of crop plants. We aimed to identify the genetic variation of OsBG1 in various indica rice cultivars by studying the allelic polymorphism of the gene, while also investigating the gene's potential to increase crop yield through the transgenic approach. Our study reports the presence of an extra 393 bp sequence having two 6 bp enhancer elements in the 3' regulatory sequence of OsBG1 in the large-grain cultivar IR64 but not in the small-grain cultivar Badshahbhog. A single copy of the OsBG1 gene in both the cultivars and a 4.1-fold higher expression of OsBG1 in IR64 than in Badshahbhog imply that the grain size is positively correlated with the level of OsBG1 expression in rice. The ectopic expression of OsBG1 under the endosperm-specific glutelin C promoter in Badshahbhog enhanced the flag leaf length, panicle weight, and panicle length by an average of 33.2%, 33.7%, and 30.5%, respectively. The length of anthers, spikelet fertility, and grain yield per plant increased in transgenic rice lines by an average of 27.5%, 8.3%, and 54.4%, respectively. Heterologous expression of OsBG1 under the constitutive 2xCaMV35S promoter improved the number of seed pods per plant and seed yield per plant in transgenic tobacco lines by an average of 2.2-fold and 2.6-fold, respectively. Improving crop yield is crucial to ensure food security and socio-economic stability, and identifying suitable genetic factor is the essential step towards this endeavor. Our findings suggest that the OsBG1 gene is a promising candidate for improving the grain yield of monocot and dicot plant systems by molecular breeding and genetic engineering.


Edible Grain , Gene Expression Regulation, Plant , Nicotiana , Oryza , Plant Proteins , Plants, Genetically Modified , Oryza/genetics , Oryza/growth & development , Nicotiana/genetics , Nicotiana/growth & development , Edible Grain/genetics , Edible Grain/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Promoter Regions, Genetic/genetics , Seeds/genetics , Seeds/growth & development
8.
J Microbiol Methods ; 222: 106952, 2024 Jul.
Article En | MEDLINE | ID: mdl-38740286

The present study was carried out to valorise cereal (rice and wheat) bran for the development of low-cost liquid consortium bioformulation. Different concentrations of bran-based liquid media formulations were evaluated for the growth of consortium biofertilizer cultures (Azotobacter chroococcum, Bacillus subtilis and Pseudomonas sp.). Among the bran-based formulations, wheat bran-based formulation WB5, exhibited the highest viable cell of 10.68 ± 0.09 Log10 CFU/ml and 12.63 ± 0.04 Log10 CFU/ml for Azotobacter chroococcum and Bacillus subtilis whereas for Pseudomonas sp., rice bran based bioformulation RB5 recorded maximum viability (12.71 ± 0.05 Log10 CFU/ml) after 72 h of incubation. RB51 and WB52liquid formulations were further optimized for enhanced shelf life using 5, 10 and 15 mM of trehalose, 0.05 and 0.1% carboxymethyl cellulose, and 0.5 and 1.0% glycerol. Following the peak growth at 72 h of incubation, a gradual decrease in the viable population of consortium biofertilizer cultures was observed in all the liquid formulations. The WB5 and RB5 formulations with 15 mM trehalose and 0.1% CMC, not only recorded significantly highest cell count of consortium biofertilizer cultures, but also maximally supported multi-functional traits i.e., phosphate and zinc solubilization, ammonia and IAA production up to 150 days. Further evaluation of seedling emergence and growth of wheat (PBW 826) under axenic conditions recorded WB5 amended with 15 mM trehalose-based consortium bioformulation to exhibit maximum emergence and growth of wheat seedlings. This low-cost liquid formulation can be used for large-scale biofertilizer production as a cost-effective liquid biofertilizer production technology.


Azotobacter , Bacillus subtilis , Culture Media , Dietary Fiber , Fertilizers , Pseudomonas , Bacillus subtilis/growth & development , Pseudomonas/growth & development , Azotobacter/growth & development , Culture Media/chemistry , Oryza/growth & development , Oryza/microbiology , Edible Grain/microbiology , Edible Grain/growth & development , Microbial Viability
9.
Int J Mol Sci ; 25(10)2024 May 18.
Article En | MEDLINE | ID: mdl-38791558

To explore the possible novel microRNA (miRNA) regulatory pathways in Zhengmai 1860, a newly cultivated drought-tolerant wheat (Triticum aestivum L.) cultivar, miRNA transcriptome sequencing of the flag leaves of Zhengmai 1860, drought-sensitive variety Zhoumai 18, and drought-resistant variety Bainong 207 was performed during the grain filling stage. We also observed changes in the chloroplast ultrastructure, phytohormone levels, and antioxidant- and photosynthesis-related physiological indicators in three wheat varieties. The results showed that the flag leaves of the drought-tolerant variety Zhengmai 1860 had higher chlorophyll contents and net photosynthetic rates than those of Zhoumai 18 under drought stress during the grain filling stage; in addition, the chloroplast structure was more complete. However, there was no significant difference between Zhengmai 1860 and Bainong 207. MiRNA transcriptome analysis revealed that the differential expression of the miRNAs and mRNAs exhibited variable specificity. The KEGG pathway enrichment results indicated that most of the genes were enriched in the MAPK signaling pathway, plant hormone signal transduction, photosynthetic antennae protein, and amino acid and carbohydrate metabolism. In the drought-tolerant cultivar Zhengmai 1860, tae-miR408 was targeted to regulate the allene oxide synthase (AOS) gene, inhibit its expression, reduce the AOS content, and decrease the synthesis of jasmonic acid (JA) and abscisic acid (ABA). The results of this study suggest that Zhengmai 1860 could improve the photosynthetic performance of flag leaves by inhibiting the expression of genes involved in the JA pathway through miRNAs under drought conditions. Moreover, multiple miRNAs may target chlorophyll, antioxidant enzymes, phytohormone signal transduction, and other related pathways; thus, it is possible to provide a more theoretical basis for wheat molecular breeding.


Droughts , Gene Expression Profiling , Gene Expression Regulation, Plant , MicroRNAs , Photosynthesis , Stress, Physiological , Triticum , MicroRNAs/genetics , MicroRNAs/metabolism , Triticum/genetics , Triticum/metabolism , Triticum/growth & development , Photosynthesis/genetics , Transcriptome , Plant Growth Regulators/metabolism , Edible Grain/genetics , Edible Grain/metabolism , Edible Grain/growth & development , Chloroplasts/metabolism , Chloroplasts/genetics , Plant Leaves/genetics , Plant Leaves/metabolism , Plant Leaves/growth & development
10.
Theor Appl Genet ; 137(6): 128, 2024 May 11.
Article En | MEDLINE | ID: mdl-38733405

KEY MESSAGE: Discovery of Rht27, a dwarf gene in wheat, showed potential in enhancing grain yield by reducing plant height. Plant height plays a crucial role in crop architecture and grain yield, and semi-dwarf Reduced Height (Rht) alleles contribute to lodging resistance and were important in "Green Revolution." However, the use of these alleles is associated with some negative side effects in some environments, such as reduced coleoptile length, low nitrogen use efficiency, and reduced yield. Therefore, novel dwarf gene resources are needed to pave an alternative route to overcome these side effects. In this study, a super-dwarf mutant rht27 was obtained by the mutagenesis of G1812 (Triticum urartu, the progenitor of the A sub-genome of common wheat). Genetic analysis revealed that the dwarf phenotype was regulated by a single recessive genetic factor. The candidate region for Rht27 was narrowed to a 1.55 Mb region on chromosome 3, within which we found two potential candidate genes that showed polymorphisms between the mutant and non-mutagenized G1812. Furthermore, the natural variants and elite haplotypes of the two candidates were investigated in a natural population of common wheat. The results showed that the natural variants affect grain yield components, and the dwarf haplotypes show the potential in improving agronomic traits and grain yield. Although the mutation in Rht27 results in severe dwarf phenotype in T. urartu, the natural variants in common wheat showed desirable phenotype, which suggests that Rht27 has the potential to improve wheat yield by utilizing its weak allelic mutation or fine-tuning its expression level.


Genes, Plant , Haplotypes , Phenotype , Triticum , Triticum/genetics , Triticum/growth & development , Alleles , Chromosome Mapping , Edible Grain/genetics , Edible Grain/growth & development
11.
Theor Appl Genet ; 137(6): 131, 2024 May 15.
Article En | MEDLINE | ID: mdl-38748046

KEY MESSAGE: Identification of 337 stable MTAs for wheat spike-related traits improved model accuracy, and favorable alleles of MTA259 and MTA64 increased grain weight and yield per plant. Wheat (Triticum aestivum L.) is one of the three primary global, staple crops. Improving spike-related traits in wheat is crucial for optimizing spike and plant morphology, ultimately leading to increased grain yield. Here, we performed a genome-wide association study using a dataset of 24,889 high-quality unique single-nucleotide polymorphisms (SNPs) and phenotypic data from 314 wheat accessions across eight diverse environments. In total, 337 stable and significant marker-trait associations (MTAs) related to spike-related traits were identified. MTA259 and MTA64 were consistently detected in seven and six environments, respectively. The presence of favorable alleles associated with MTA259 and MTA64 significantly reduced wheat spike exsertion length and spike length, while enhancing thousand kernel weight and yield per plant. Combined gene expression and network analyses identified TraesCS6D03G0692300 and TraesCS6D03G0692700 as candidate genes for MTA259 and TraesCS2D03G0111700 and TraesCS2D03G0112500 for MTA64. The identified MTAs significantly improved the prediction accuracy of each model compared with using all the SNPs, and the random forest model was optimal for genome selection. Additionally, the eight stable and major MTAs, including MTA259, MTA64, MTA66, MTA94, MTA110, MTA165, MTA180, and MTA164, were converted into cost-effective and efficient detection markers. This study provided valuable genetic resources and reliable molecular markers for wheat breeding programs.


Phenotype , Polymorphism, Single Nucleotide , Triticum , Triticum/genetics , Triticum/growth & development , Genome-Wide Association Study , Quantitative Trait Loci , Alleles , Plant Breeding , Genome, Plant , Genetic Association Studies , Selection, Genetic , Genotype , Genetic Markers , Edible Grain/genetics , Edible Grain/growth & development
12.
PLoS One ; 19(5): e0302745, 2024.
Article En | MEDLINE | ID: mdl-38776277

Pigmented rice, especially black rice, is gaining popularity as it is rich in antioxidants such as anthocyanins and γ-oryzanol. At present, knowledge about temporal control of biosynthesis and accumulation of antioxidants during grain development is limited. To address this, the accumulation patterns of anthocyanins and γ-oryzanol were assessed in two distinct black rice genotypes over the course of grain development, and the expression of known regulatory genes for anthocyanin biosynthesis was examined. The results indicated that total γ-oryzanol content increased continuously throughout grain development, while total anthocyanins peaked at dough stage (15 to 21 days after flowering) followed by a decline until grain maturity in both genotypes. However, the rate of decrease in anthocyanin content differed between genotypes, and a more prominent decline in cyanidin 3-O-glucoside (C3G) relative to peonidin 3-O-glucoside (P3G) was observed for both. Anthocyanin content was closely linked with the expression of key regulatory genes in the MBW (MYB-bHLH-WD40) complex. This improved knowledge of the genotype-specific biosynthesis (anthocyanins only) and accumulation patterns of anthocyanins and γ-oryzanol can inform subsequent research efforts to increase concentrations of these key antioxidants in black rice grains.


Anthocyanins , Oryza , Phenylpropionates , Anthocyanins/metabolism , Anthocyanins/biosynthesis , Oryza/metabolism , Oryza/genetics , Oryza/growth & development , Phenylpropionates/metabolism , Gene Expression Regulation, Plant , Genotype , Glucosides/metabolism , Glucosides/biosynthesis , Edible Grain/metabolism , Edible Grain/genetics , Edible Grain/growth & development , Antioxidants/metabolism , Plant Proteins/metabolism , Plant Proteins/genetics
13.
Nat Commun ; 15(1): 4300, 2024 May 21.
Article En | MEDLINE | ID: mdl-38773134

The chromatin modifier GRAIN WEIGHT 6a (GW6a) enhances rice grain size and yield. However, little is known about its gene network determining grain size. Here, we report that MITOGEN-ACTIVED PROTEIN KINASE 6 (OsMAPK6) and E3 ligase CHANG LI GENG 1 (CLG1) interact with and target GW6a for phosphorylation and ubiquitylation, respectively. Unexpectedly, however, in vitro and in vivo assays reveal that both of the two post-translational modifications stabilize GW6a. Furthermore, we uncover two major GW6a phosphorylation sites (serine142 and threonine186) targeted by OsMAPK6 serving an important role in modulating grain size. In addition, our genetic and molecular results suggest that the OsMAPK6-GW6a and CLG1-GW6a axes are crucial and operate in a non-additive manner to control grain size. Overall, our findings identify a previously unknown mechanism by which phosphorylation and ubiquitylation non-additively stabilize GW6a to enhance grain size, and reveal correlations and interactions of these posttranslational modifications during rice grain development.


Gene Expression Regulation, Plant , Oryza , Plant Proteins , Ubiquitination , Oryza/metabolism , Oryza/genetics , Oryza/growth & development , Phosphorylation , Plant Proteins/metabolism , Plant Proteins/genetics , Ubiquitin-Protein Ligases/metabolism , Ubiquitin-Protein Ligases/genetics , Edible Grain/metabolism , Edible Grain/growth & development , Protein Processing, Post-Translational , Plants, Genetically Modified , Chromatin/metabolism
14.
Int J Mol Sci ; 25(10)2024 May 17.
Article En | MEDLINE | ID: mdl-38791522

The role of lncRNA and circRNA in wheat grain development is still unclear. The objectives of this study were to characterize the lncRNA and circRNA in the wheat grain development and to construct the interaction network among lncRNA, circRNA, and their target miRNA to propose a lncRNA-circRNA-miRNA module related to wheat grain development. Full transcriptome sequencing on two wheat varieties (Annong 0942 and Anke 2005) with significant differences in 1000-grain weight at 10 d (days after pollination), 20 d, and 30 d of grain development were conducted. We detected 650, 736, and 609 differentially expressed lncRNA genes, and 769, 1054, and 1062 differentially expressed circRNA genes in the grains of 10 days, 20 days and 30 days after pollination between Annong 0942 and Anke 2005, respectively. An analysis of the lncRNA-miRNA and circRNA-miRNA targeting networks reveals that circRNAs exhibit a more complex and extensive interaction network in the development of cereal grains and the formation of grain shape. Central to these interactions are tae-miR1177, tae-miR1128, and tae-miR1130b-3p. In contrast, lncRNA genes only form a singular network centered around tae-miR1133 and tae-miR5175-5p when comparing between varieties. Further analysis is conducted on the underlying genes of all target miRNAs, we identified TaNF-YB1 targeted by tae-miR1122a and TaTGW-7B targeted by miR1130a as two pivotal regulatory genes in the development of wheat grains. The quantitative real-time PCR (qRT-PCR) and dual-luciferase reporter assays confirmed the target regulatory relationships between miR1130a-TaTGW-7B and miR1122a-TaNF-YB1. We propose a network of circRNA and miRNA-mediated gene regulation in the development of wheat grains.


Edible Grain , Gene Expression Regulation, Plant , MicroRNAs , RNA, Circular , RNA, Long Noncoding , Triticum , Triticum/genetics , Triticum/growth & development , RNA, Long Noncoding/genetics , RNA, Circular/genetics , RNA, Circular/metabolism , MicroRNAs/genetics , Edible Grain/genetics , Edible Grain/growth & development , Gene Regulatory Networks , RNA, Plant/genetics , Gene Expression Profiling
15.
BMC Plant Biol ; 24(1): 458, 2024 May 27.
Article En | MEDLINE | ID: mdl-38797860

BACKGROUND: The endosperm serves as the primary source of nutrients for maize (Zea mays L.) kernel embryo development and germination. Positioned at the base of the endosperm, the transfer cells (TCs) of the basal endosperm transfer layer (BETL) generate cell wall ingrowths, which enhance the connectivity between the maternal plant and the developing kernels. These TCs play a crucial role in nutrient transport and defense against pathogens. The molecular mechanism underlying BETL development in maize remains unraveled. RESULTS: This study demonstrated that the MYB-related transcription factor ZmMYBR29, exhibited specific expression in the basal cellularized endosperm, as evidenced by in situ hybridization analysis. Utilizing the CRISPR/Cas9 system, we successfully generated a loss-of-function homozygous zmmybr29 mutant, which presented with smaller kernel size. Observation of histological sections revealed abnormal development and disrupted morphology of the cell wall ingrowths in the BETL. The average grain filling rate decreased significantly by 26.7% in zmmybr29 mutant in comparison to the wild type, which impacted the dry matter accumulation within the kernels and ultimately led to a decrease in grain weight. Analysis of RNA-seq data revealed downregulated expression of genes associated with starch synthesis and carbohydrate metabolism in the mutant. Furthermore, transcriptomic profiling identified 23 genes that expressed specifically in BETL, and the majority of these genes exhibited altered expression patterns in zmmybr29 mutant. CONCLUSIONS: In summary, ZmMYBR29 encodes a MYB-related transcription factor that is expressed specifically in BETL, resulting in the downregulation of genes associated with kernel development. Furthermore, ZmMYBR29 influences kernels weight by affecting the grain filling rate, providing a new perspective for the complementation of the molecular regulatory network in maize endosperm development.


Edible Grain , Endosperm , Gene Expression Regulation, Plant , Plant Proteins , Transcription Factors , Zea mays , Zea mays/genetics , Zea mays/growth & development , Zea mays/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Edible Grain/genetics , Edible Grain/growth & development , Edible Grain/metabolism , Endosperm/genetics , Endosperm/growth & development , Endosperm/metabolism , Cell Wall/metabolism , Cell Wall/genetics , Seeds/genetics , Seeds/growth & development , Seeds/metabolism , CRISPR-Cas Systems
16.
PLoS One ; 19(5): e0303857, 2024.
Article En | MEDLINE | ID: mdl-38820516

Global food security basically depends on potential yields of staple grain crops worldwide, especially under climate change. However, most scholars use various models of production function in which climatic factors are often considered to estimate crop yield mostly at local or regional level. Therefore, in this paper: Potential yields of rice, wheat, maize and soybean worldwide by 2030 are projected creatively using Auto-regressive Integrated Moving Average and Trend Regressed (ARIMA-TR) model in which actual yields in recent two years are used for testing the reliability of projection and Gray System (GS) model for validating the test; Especially individual impacts of climate change on the productions of rice, wheat, maize and soybean worldwide since 1961 are analyzed by using unary regression model in which global mean temperature and land precipitation are independent variable while the yield of crop being dependent one, respectively. Results show that: by 2030, the ratio between average and top yields of world rice is projected to be 50.6% increasing, while those of world wheat, world maize and world soybean are projected to be 38.0% increasing, 14.7% decreasing and 72.5% increasing, respectively. Since 1961 global warming has exerted a negative impact on average yield of world rice less than on its top, a positive effect on average yield of world wheat while a negative impact on its top, a positive effect on average yield of world maize less than on its top, and a positive influence on average yield of world soybean while a negative one on its top, which might be slightly mitigated by 'Carbon Peak' target. The fluctuation of global rainfall contributes to the productions of these crops much less than global warming during same period. Our findings indicate that: to improve global production of four staple grain crops by 2030, the priorities of input should be given to either rice or wheat in both high and low yield countries, whereas to maize in high yield countries and to soybean in low yield countries. These insights highlight some difference from previous studies, and provide academia with innovative comprehension and policy-decision makers with supportive information on sustainable production of these four staple grain crops for global food security under climate change in the future.


Climate Change , Crops, Agricultural , Oryza , Triticum , Zea mays , Crops, Agricultural/growth & development , Zea mays/growth & development , Triticum/growth & development , Oryza/growth & development , Edible Grain/growth & development , Glycine max/growth & development , Global Warming
17.
ACS Appl Mater Interfaces ; 16(23): 30355-30370, 2024 Jun 12.
Article En | MEDLINE | ID: mdl-38805353

The rational application of fertilizers is crucial for achieving high crop yields and ensuring global food security. The use of biopolymers for slow-release fertilizers (SRFs) development has emerged as a game-changer and environmentally sustainable pathway to enhance crop yields by optimizing plant growth phases. Herein, with a renewed focus on circular bioeconomy, a novel functionalized lignin-based coating material (FLGe) was developed for the sustained release of nutrients. This innovative approach involved the extraction and sustainable functionalization of lignin through a solvent-free esterification reaction with humic acid─an organic compound widely recognized for its biostimulant properties in agriculture. The primary objective was to fortify the hydration barrier of lignin by reducing the number of its free hydroxyl groups, thereby enhancing release control, while simultaneously harnessing the agronomic benefits offered by humic acid. After confirming the synthesis of functionalized lignin (FLGe) through 13C NMR analysis, it was integrated at varying proportions into either a cellulosic or starch matrix. This resulted in the creation of five distinct formulations, which were then utilized as coatings for diammonium phosphate (DAP) fertilizer. Experimental findings revealed an improved morphology and hardness (almost 3-fold) of DAP fertilizer granules after coating along with a positive impact on the soil's water retention capacity (7%). Nutrient leaching in soil was monitored for 100 days and a substantial reduction of nutrients leaching up to 80% was successfully achieved using coated DAP fertilizer. Furthermore, to get a fuller picture of their efficiency, a pot trial was performed using two different soil textures and demonstrated that the application of FLGe-based SRFs significantly enhanced the physiological and agronomic parameters of wheat, including leaf evolution and root architecture, resulting in an almost 50% increase in grain yield and improved quality. The results proved the potential of lignin functionalization to advance agricultural sustainability and foster a robust bioeconomy aligning with the premise "from the soil to the soil".


Fertilizers , Humic Substances , Lignin , Triticum , Lignin/chemistry , Triticum/growth & development , Triticum/chemistry , Triticum/drug effects , Triticum/metabolism , Phosphates/chemistry , Soil/chemistry , Edible Grain/chemistry , Edible Grain/growth & development
18.
PLoS One ; 19(5): e0303258, 2024.
Article En | MEDLINE | ID: mdl-38809880

Food security is a goal and means of global sustainable development, and an important component of China's national security. Based on grain production data from 2000 to 2020, 31 provinces (cities, autonomous regions) in China were used as research units to analyze the spatiotemporal differences and driving forces of grain production in China using a combination of local correlation index, center of gravity transfer model, and geographic detector. The results as follows, ① During the research period, China's total grain production showed a decrease followed by an increase, and the yield per unit area of grain showed an increasing trend. Corn has become the "largest staple food" in China; ② During the research period, the focus of China's grain production continued to shift northward, with Heilongjiang, Henan and Shandong provinces becoming the main grain production areas, with Henan being the province where China's grain production center was located. Among the factors affecting grain yield, the effective irrigation area (0.971) has the strongest explanatory power. Finally, countermeasures and suggestions were proposed from five aspects, stabilizing grain production, reducing grain inventory pressure, implementing regional grain security responsibilities, improving grain circulation efficiency, promoting high-quality grain engineering construction, adjusting grain production structure, strictly implementing farmland protection responsibilities, scientifically applying pesticides, fertilizers and other production materials, emphasizing agricultural infrastructure construction and stabilizing the number of agricultural labor force.


Edible Grain , Spatio-Temporal Analysis , China , Edible Grain/growth & development , Agriculture , Food Security , Humans , Food Supply , Sustainable Development/trends
19.
Glob Chang Biol ; 30(5): e17298, 2024 May.
Article En | MEDLINE | ID: mdl-38712640

Diversified crop rotations have been suggested to reduce grain yield losses from the adverse climatic conditions increasingly common under climate change. Nevertheless, the potential for climate change adaptation of different crop rotational diversity (CRD) remains undetermined. We quantified how climatic conditions affect small grain and maize yields under different CRDs in 32 long-term (10-63 years) field experiments across Europe and North America. Species-diverse and functionally rich rotations more than compensated yield losses from anomalous warm conditions, long and warm dry spells, as well as from anomalous wet (for small grains) or dry (for maize) conditions. Adding a single functional group or crop species to monocultures counteracted yield losses from substantial changes in climatic conditions. The benefits of a further increase in CRD are comparable with those of improved climatic conditions. For instance, the maize yield benefits of adding three crop species to monocultures under detrimental climatic conditions exceeded the average yield of monocultures by up to 553 kg/ha under non-detrimental climatic conditions. Increased crop functional richness improved yields under high temperature, irrespective of precipitation. Conversely, yield benefits peaked at between two and four crop species in the rotation, depending on climatic conditions and crop, and declined at higher species diversity. Thus, crop species diversity could be adjusted to maximize yield benefits. Diversifying rotations with functionally distinct crops is an adaptation of cropping systems to global warming and changes in precipitation.


Climate Change , Crops, Agricultural , Zea mays , Crops, Agricultural/growth & development , Zea mays/growth & development , North America , Europe , Edible Grain/growth & development , Agriculture/methods , Biodiversity , Crop Production/methods
20.
PeerJ ; 12: e17310, 2024.
Article En | MEDLINE | ID: mdl-38699188

Background: Oat is a dual-purpose cereal used for grain and forage. The demand of oat has been increasing as the understanding of the nutritional, ecological, and economic values of oat increased. However, the frequent lodging during the growing period severely affect the high yielding potential and the quality of the grain and forage of oat. Methods: Therefore, we used the lodging-resistant variety LENA and the lodging-sensitive variety QY2 as materials, implementing four different planting densities: 2.25×106 plants/ha (D1), 4.5×106 plants/ha (D2), 6.75×106 plants/ha (D3), and 9×106 plants/ha (D4). At the appropriate growth and development stages, we assessed agronomic traits, mechanical characteristics, biochemical compositions, yield and its components. The study investigated the impact of planting density on the growth, lodging, and yield of oat, as well as their interrelationships. Additionally, we identified the optimal planting density to establish a robust crop structure. The research aims to contribute to the high-yield and high-quality cultivation of oat. Results: We observed that with increasing planting density, plant height, grass and grain yields of both varieties first increased and then decreased; root fresh weight, stem diameter, stem wall thickness, stem puncture strength, breaking strength, compressive strength, lignin and crude fiber contents, and yield components decreased; whereas the lodging rate and lodging coefficient increased. Planting density affects lodging by regulating plant height, height of center of gravity, stem wall thickness, internode length, and root fresh weight of oat. Additionally, it can impact stem mechanical strength by modulating the synthesis of lignin and crude fiber, which in turn affecting lodging resistance. Plant height, height of center of gravity, stem wall thickness, internode length, root fresh weight, breaking strength, compressive strength, lignin and crude fiber content, single-plant weight, grain yield and 1,000-grain weight can serve as important indicators for evaluating oat stem lodging resistance. We also noted that planting density affected grain yield both directly and indirectly (by affecting lodging); high density increased lodging rate and decreased grain yield, mainly by reducing 1,000-grain weight. Nonetheless, there was no significant relationship between lodging and grass yield. As appropriate planting density can increase the yield while maintaining good lodging resistance, in this study, 4.5×106 plants/ha (D2) was found to be the best planting density for oat in terms of lodging resistance and grass and grain yield. These findings can be used as a reference for oat planting.


Avena , Avena/growth & development , Edible Grain/growth & development , Crop Production/methods , Agriculture/methods
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